Definition | Lactobacillus buchneri NRRL B-30929 chromosome, complete genome. |
---|---|
Accession | NC_015428 |
Length | 2,506,301 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 22 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 24045..24057 | attL TGCTTACCATTGA | N/A | Click |
2 | complement(24058..25209) | PROPHAGE_Oceano_HTE831: integrase; Lbuc_0020; phage(gi23097608) | 1e-64 | Click |
3 | complement(25262..26122) | PHAGE_Brocho_BL3: gp41; Lbuc_0021; phage(gi327409433) | 1e-05 | Click |
4 | 26275..26457 | phage protein; Lbuc_0022 | N/A | Click |
5 | 26462..26758 | prophage lsa1 protein; Lbuc_0023 | N/A | Click |
6 | 26959..27657 | PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; Lbuc_0024; phage(gi399528836) | 2e-27 | Click |
7 | 27659..27775 | hypothetical protein; Lbuc_0025 | N/A | Click |
8 | 27793..27924 | hypothetical protein; Lbuc_0026 | N/A | Click |
9 | 27905..28030 | hypothetical protein; Lbuc_0027 | N/A | Click |
10 | complement(28027..28814) | PROPHAGE_Xantho_33913: IS1480 transposase; Lbuc_0028; phage(gi21231089) | 3e-51 | Click |
11 | 29043..29282 | hypothetical protein; Lbuc_0029 | N/A | Click |
12 | 29298..29705 | hypothetical protein; Lbuc_0030 | N/A | Click |
13 | 29698..30462 | PHAGE_Strept_YMC_2011: phage protein; Lbuc_0031; phage(gi399498702) | 7e-18 | Click |
14 | 30496..31950 | PHAGE_Lactoc_bIL310: helicase; Lbuc_0032; phage(gi13095886) | 2e-89 | Click |
15 | complement(32219..32326) | hypothetical protein; Lbuc_0033 | N/A | Click |
16 | 32396..32815 | PHAGE_Strept_2: hypothetical protein SpyM3_0956; Lbuc_0034; phage(gi28876240) | 2e-17 | Click |
17 | 32817..33236 | hypothetical protein; Lbuc_0035 | N/A | Click |
18 | complement(33498..34676) | integrase catalytic subunit; Lbuc_0036 | N/A | Click |
19 | 35228..35239 | attL CAAGGTTTTGGC | N/A | Click |
20 | 35508..36437 | PHAGE_Spirop_R8A2B: putative transposase; Lbuc_0037; phage(gi9626114) | 9e-21 | Click |
21 | 37019..37330 | MazG nucleotide pyrophosphohydrolase; Lbuc_0038 | N/A | Click |
22 | 37351..39096 | hypothetical protein; Lbuc_0039 | N/A | Click |
23 | 39201..39212 | attL CAAAAGCTTATT | N/A | Click |
24 | 39230..39337 | hypothetical protein; Lbuc_0040 | N/A | Click |
25 | 39379..40308 | PHAGE_Spirop_R8A2B: putative transposase; Lbuc_0041; phage(gi9626114) | 1e-20 | Click |
26 | 41224..41235 | attR CAAAAGCTTATT | N/A | Click |
27 | 41859..41870 | attR CAAGGTTTTGGC | N/A | Click |
28 | 43821..43833 | attR TGCTTACCATTGA | N/A | Click |
Region 2, total : 11 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(538727..539998) | PROPHAGE_Staphy_N315: transposase; Lbuc_0497; phage(gi15927655) | 3e-61 | Click |
2 | complement(540217..540708) | PHAGE_Bacill_36: baseplate hub protein; Lbuc_0498; phage(gi156564128) | 7e-11 | Click |
3 | complement(540999..543710) | PHAGE_Sulfol_STSV1: hypothetical protein STSV1pORF37; Lbuc_0499; phage(gi51980163) | 2e-06 | Click |
4 | 543867..544847 | PHAGE_Parame_NY2A: hypothetical protein NY2A_B371L; Lbuc_0500; phage(gi157952675) | 6e-21 | Click |
5 | 544880..545500 | PHAGE_Bacill_GIL16c: putative lytic enzyme; Lbuc_0501; phage(gi62327545) | 6e-11 | Click |
6 | 545558..546322 | PHAGE_Cronob_vB_CsaP_GAP52: hypothetical protein; Lbuc_0502; phage(gi414087559) | 6e-09 | Click |
7 | 546297..546626 | PHAGE_Megavi_lba: thioredoxin-like protein; Lbuc_0503; phage(gi448825658) | 2e-08 | Click |
8 | complement(546635..547024) | hypothetical protein; Lbuc_0504 | N/A | Click |
9 | 547113..547667 | GCN5-like N-acetyltransferase; Lbuc_0505 | N/A | Click |
10 | 547913..549310 | Na+/H+ antiporter NhaC; Lbuc_0506 | N/A | Click |
11 | 549519..550133 | PHAGE_Lactob_LP65: hypothetical protein LP65_gp121; Lbuc_0507; phage(gi56693169) | 4e-23 | Click |
Region 3, total : 83 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1463072..1463893) | PHAGE_Lactob_c5: putative endolysin; Lbuc_1390; phage(gi418488198) | 4e-35 | Click |
2 | complement(1463886..1464461) | hypothetical protein; Lbuc_1391 | N/A | Click |
3 | complement(1464474..1464791) | PHAGE_Lactoc_r1t: hypothetical protein r1tp46; Lbuc_1392; phage(gi23455765) | 5e-16 | Click |
4 | 1464987..1464998 | attL AATTCATAAAAA | N/A | Click |
5 | complement(1465007..1465396) | hypothetical protein; Lbuc_1393 | N/A | Click |
6 | complement(1465408..1466973) | PHAGE_Lactob_Lj771: hypothetical protein LJ771_049; Lbuc_1394; phage(gi163932148) | 5e-09 | Click |
7 | complement(1466973..1467590) | PHAGE_Lister_B054: gp25; Lbuc_1395; phage(gi157325309) | 5e-11 | Click |
8 | complement(1467583..1468758) | PHAGE_Lister_B054: gp24; Lbuc_1396; phage(gi157325308) | 7e-53 | Click |
9 | complement(1468748..1469155) | PHAGE_Lister_B054: gp23; Lbuc_1397; phage(gi157325307) | 8e-07 | Click |
10 | complement(1469167..1469610) | hypothetical protein; Lbuc_1398 | N/A | Click |
11 | complement(1469623..1470672) | PHAGE_Lister_B054: gp21; Lbuc_1399; phage(gi157325305) | 3e-17 | Click |
12 | complement(1470665..1471093) | PHAGE_Lister_B054: gp20; Lbuc_1400; phage(gi157325304) | 9e-15 | Click |
13 | complement(1471107..1472039) | PHAGE_Lister_B054: gp19; Lbuc_1401; phage(gi157325303) | 7e-13 | Click |
14 | complement(1472039..1477969) | PHAGE_Lactoc_bIL286: tail protein; Lbuc_1402; phage(gi13095795) | 5e-90 | Click |
15 | complement(1478000..1478179) | hypothetical protein; Lbuc_1403 | N/A | Click |
16 | complement(1478214..1478564) | PHAGE_Lister_B054: gp16; Lbuc_1404; phage(gi157325300) | 1e-06 | Click |
17 | complement(1478646..1479062) | PHAGE_Lister_B054: gp15; Lbuc_1405; phage(gi157325299) | 1e-15 | Click |
18 | complement(1479076..1480131) | PHAGE_Lister_B054: gp14; Lbuc_1406; phage(gi157325298) | 3e-49 | Click |
19 | complement(1480134..1480616) | hypothetical protein; Lbuc_1407 | N/A | Click |
20 | complement(1480600..1480980) | hypothetical protein; Lbuc_1408 | N/A | Click |
21 | complement(1480982..1481572) | PHAGE_Lister_B054: gp11; Lbuc_1409; phage(gi157325295) | 1e-22 | Click |
22 | complement(1481569..1481949) | hypothetical protein; Lbuc_1410 | N/A | Click |
23 | complement(1481963..1482343) | PHAGE_Lister_B054: gp9; Lbuc_1411; phage(gi157325293) | 2e-05 | Click |
24 | complement(1482355..1483242) | PHAGE_Lister_B054: gp8; Lbuc_1412; phage(gi157325292) | 2e-46 | Click |
25 | complement(1483262..1483768) | PHAGE_Lister_B054: gp7; Lbuc_1413; phage(gi157325291) | 1e-09 | Click |
26 | complement(1483768..1484916) | PHAGE_Lister_B054: gp6; Lbuc_1414; phage(gi157325290) | 3e-70 | Click |
27 | complement(1484929..1485429) | PHAGE_Acanth_1: hypothetical protein ATCV1_z266L; Lbuc_1415; phage(gi155371213) | 3e-05 | Click |
28 | complement(1485552..1486394) | PHAGE_Lister_B054: gp4; Lbuc_1416; phage(gi157325288) | 9e-23 | Click |
29 | complement(1486403..1487848) | PHAGE_Lister_B054: gp3; Lbuc_1417; phage(gi157325287) | 7e-66 | Click |
30 | complement(1487860..1489311) | PHAGE_Lister_B054: TerL; Lbuc_1418; phage(gi157325286) | 4e-151 | Click |
31 | complement(1489292..1489780) | PHAGE_Entero_phiFL2A: hypothetical protein; Lbuc_1419; phage(gi281416524) | 7e-21 | Click |
32 | complement(1489870..1490172) | hypothetical protein; Lbuc_1420 | N/A | Click |
33 | complement(1490314..1490841) | hypothetical protein; Lbuc_1421 | N/A | Click |
34 | complement(1490953..1491135) | hypothetical protein; Lbuc_1422 | N/A | Click |
35 | complement(1491146..1491463) | hypothetical protein; Lbuc_1423 | N/A | Click |
36 | complement(1491453..1491623) | PHAGE_Lactob_Sha1: HNH nuclease; Lbuc_1424; phage(gi418489799) | 5e-06 | Click |
37 | complement(1492207..1492671) | PHAGE_Lactob_A2: hypothetical protein A2p53; Lbuc_1425; phage(gi22296572) | 4e-08 | Click |
38 | complement(1492764..1492994) | hypothetical protein; Lbuc_1426 | N/A | Click |
39 | complement(1493008..1493169) | hypothetical protein; Lbuc_1427 | N/A | Click |
40 | complement(1493169..1493717) | PHAGE_Mycoba_LeBron: gp117; Lbuc_1428; phage(gi304361052) | 2e-10 | Click |
41 | complement(1493814..1493999) | hypothetical protein; Lbuc_1429 | N/A | Click |
42 | complement(1493996..1494385) | PHAGE_Lactob_phig1e: possible sensor protein; Lbuc_1430; phage(gi23455793) | 3e-11 | Click |
43 | complement(1494382..1495056) | PHAGE_Lactob_Nu: putative methylase; Lbuc_1431; phage(gi78000014) | 6e-66 | Click |
44 | complement(1495053..1495268) | hypothetical protein; Lbuc_1432 | N/A | Click |
45 | complement(1495265..1495435) | hypothetical protein; Lbuc_1433 | N/A | Click |
46 | complement(1495435..1495677) | hypothetical protein; Lbuc_1434 | N/A | Click |
47 | complement(1495690..1496121) | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp41; Lbuc_1435; phage(gi195661241) | 2e-27 | Click |
48 | complement(1496132..1496860) | PHAGE_Lactoc_ul36: putative anti-repressor; Lbuc_1436; phage(gi21716079) | 6e-38 | Click |
49 | complement(1496873..1497121) | hypothetical protein; Lbuc_1437 | N/A | Click |
50 | complement(1497102..1497416) | hypothetical protein; Lbuc_1438 | N/A | Click |
51 | complement(1497413..1498282) | PHAGE_Entero_EF62phi: D replication protein DC; Lbuc_1439; phage(gi384519773) | 1e-21 | Click |
52 | 1498333..1498617 | hypothetical protein; Lbuc_1440 | N/A | Click |
53 | complement(1498614..1498769) | hypothetical protein; Lbuc_1441 | N/A | Click |
54 | complement(1498781..1499602) | PHAGE_Entero_EF62phi: dD and phage-associated domain protein; Lbuc_1442; phage(gi384519772) | 2e-57 | Click |
55 | complement(1499614..1500465) | PHAGE_Lactob_LF1: hypothetical protein; Lbuc_1443; phage(gi418489429) | 8e-61 | Click |
56 | complement(1500398..1501345) | PHAGE_Strept_1: hypothetical protein EJ-1p21; Lbuc_1444; phage(gi39653695) | 2e-66 | Click |
57 | complement(1501349..1501669) | hypothetical protein; Lbuc_1445 | N/A | Click |
58 | complement(1501666..1501818) | hypothetical protein; Lbuc_1446 | N/A | Click |
59 | complement(1501808..1502026) | hypothetical protein; Lbuc_1447 | N/A | Click |
60 | complement(1502170..1502466) | hypothetical protein; Lbuc_1448 | N/A | Click |
61 | complement(1502444..1502956) | helix-turn-helix domain-containing protein; Lbuc_1449 | N/A | Click |
62 | complement(1503066..1503179) | hypothetical protein; Lbuc_1450 | N/A | Click |
63 | complement(1503176..1503397) | PHAGE_Lister_A118: putative repressor protein; Lbuc_1451; phage(gi16798820) | 8e-15 | Click |
64 | 1503540..1503917 | PHAGE_Lister_A118: putative repressor protein; Lbuc_1452; phage(gi16798819) | 2e-19 | Click |
65 | 1503910..1504326 | PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp4; Lbuc_1453; phage(gi56694873) | 1e-11 | Click |
66 | 1504346..1505224 | hypothetical protein; Lbuc_1454 | N/A | Click |
67 | 1505241..1505609 | hypothetical protein; Lbuc_1455 | N/A | Click |
68 | 1505666..1506223 | hypothetical protein; Lbuc_1456 | N/A | Click |
69 | complement(1506197..1506403) | hypothetical protein; Lbuc_1457 | N/A | Click |
70 | 1506543..1506872 | hypothetical protein; Lbuc_1458 | N/A | Click |
71 | 1506977..1508182 | PHAGE_Lister_B054: gp38; Lbuc_1459; phage(gi157325322) | 4e-51 | Click |
72 | complement(1508352..1508717) | 50S ribosomal protein L7/L12; Lbuc_1460 | N/A | Click |
73 | complement(1508757..1509269) | 50S ribosomal protein L10; Lbuc_1461 | N/A | Click |
74 | complement(1509477..1510184) | 50S ribosomal protein L1; Lbuc_1462 | N/A | Click |
75 | complement(1510281..1510706) | 50S ribosomal protein L11; Lbuc_1463 | N/A | Click |
76 | complement(1510827..1511675) | hypothetical protein; Lbuc_1464 | N/A | Click |
77 | complement(1511695..1512243) | PHAGE_Synech_S_CRM01: NusG antitermination factor; Lbuc_1465; phage(gi333798264) | 3e-09 | Click |
78 | complement(1512349..1512525) | preprotein translocase subunit SecE; Lbuc_1466 | N/A | Click |
79 | complement(1512549..1512698) | 50S ribosomal protein L33; Lbuc_1467 | N/A | Click |
80 | complement(1512750..1513307) | RNA polymerase sigma factor, sigma-70 family; Lbuc_1468 | N/A | Click |
81 | complement(1513455..1513988) | hypothetical protein; Lbuc_1469 | N/A | Click |
82 | complement(1514004..1514804) | TrmH family RNA methyltransferase; Lbuc_1470 | N/A | Click |
83 | complement(1514794..1515204) | ribonuclease III; Lbuc_1471 | N/A | Click |
84 | complement(1515213..1516619) | PHAGE_Megavi_lba: cysteinyl-tRNA synthetase; Lbuc_1472; phage(gi448825804) | 7e-45 | Click |
85 | 1516670..1516683 | attL TTGTTTTATTACTT | N/A | Click |
86 | complement(1516742..1517767) | PHAGE_Staphy_phiPV83: transposase; Lbuc_1473; phage(gi9635740) | 4e-42 | Click |
87 | 1517887..1517900 | attR TTGTTTTATTACTT | N/A | Click |
88 | 1525855..1525866 | attR AATTCATAAAAA | N/A | Click |
Region 4, total : 52 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1549566..1550837 | PROPHAGE_Staphy_N315: transposase; Lbuc_1504; phage(gi15927655) | 3e-61 | Click |
2 | 1550924..1550938 | attL TATGCCGACTGCAGG | N/A | Click |
3 | complement(1551155..1551406) | PHAGE_Lactob_Sha1: phage-related holin; Lbuc_1505; phage(gi418489822) | 5e-12 | Click |
4 | complement(1551406..1552230) | PHAGE_Lactob_c5: putative endolysin; Lbuc_1506; phage(gi418488198) | 1e-32 | Click |
5 | complement(1552243..1552710) | hypothetical protein; Lbuc_1507 | N/A | Click |
6 | complement(1553111..1553284) | hypothetical protein; Lbuc_1508 | N/A | Click |
7 | complement(1553302..1553712) | hypothetical protein; Lbuc_1509 | N/A | Click |
8 | complement(1553727..1555610) | PHAGE_Lactob_Sha1: prophage Lp2 protein 53-like protein; Lbuc_1510; phage(gi418489820) | 8e-29 | Click |
9 | complement(1555603..1555743) | hypothetical protein; Lbuc_1511 | N/A | Click |
10 | complement(1555753..1556586) | PHAGE_Cyanop_P_RSM6: hypothetical protein; Lbuc_1512; phage(gi472341641) | 4e-07 | Click |
11 | complement(1556583..1559165) | PHAGE_Lactob_Sha1: minor structural protein gp89-like protein; Lbuc_1513; phage(gi418489816) | 4e-96 | Click |
12 | complement(1561197..1566773) | PHAGE_Lactoc_bIL286: tail protein; Lbuc_1516; phage(gi13095795) | 6e-166 | Click |
13 | complement(1566982..1567359) | PHAGE_Lactob_Nu: putative tail component; Lbuc_1517; phage(gi78000031) | 8e-12 | Click |
14 | complement(1567418..1568104) | PHAGE_Lactob_phiAT3: putative major tail protein; Lbuc_1518; phage(gi48697269) | 1e-31 | Click |
15 | complement(1568105..1568494) | PHAGE_Strept_YMC_2011: putative tail component protein; Lbuc_1519; phage(gi399498727) | 3e-11 | Click |
16 | complement(1568494..1568892) | PHAGE_Lactob_Nu: putative head-tail joining protein; Lbuc_1520; phage(gi77999993) | 4e-18 | Click |
17 | complement(1568885..1569247) | PHAGE_Strept_Sfi19: putative head-tail joining protein; Lbuc_1521; phage(gi9632902) | 5e-14 | Click |
18 | complement(1569237..1569527) | PHAGE_Lactoc_bIL309: Orf44; Lbuc_1522; phage(gi13095849) | 3e-10 | Click |
19 | complement(1569591..1570832) | PHAGE_Lactob_Sha1: HK97 family phage major capsid protein; Lbuc_1523; phage(gi418489806) | 2e-86 | Click |
20 | complement(1570836..1571537) | PHAGE_Lactob_Sha1: protease subunit of ATP-dependent Clp protease; Lbuc_1524; phage(gi418489805) | 3e-53 | Click |
21 | complement(1571518..1572666) | PHAGE_Lactob_Sha1: phage portal protein; Lbuc_1525; phage(gi418489804) | 1e-47 | Click |
22 | complement(1572680..1572844) | hypothetical protein; Lbuc_1526 | N/A | Click |
23 | complement(1572905..1574800) | PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; Lbuc_1527; phage(gi418489802) | 3e-125 | Click |
24 | complement(1574800..1575318) | PHAGE_Lactob_1: terminase small subunit; Lbuc_1528; phage(gi219563198) | 9e-28 | Click |
25 | complement(1575907..1576362) | PHAGE_Lactob_1: HNH nuclease; Lbuc_1529; phage(gi219563244) | 3e-30 | Click |
26 | complement(1576340..1577236) | hypothetical protein; Lbuc_1530 | N/A | Click |
27 | complement(1577295..1577486) | hypothetical protein; Lbuc_1531 | N/A | Click |
28 | complement(1577525..1577716) | hypothetical protein; Lbuc_1532 | N/A | Click |
29 | complement(1577713..1577928) | hypothetical protein; Lbuc_1533 | N/A | Click |
30 | complement(1577925..1578137) | hypothetical protein; Lbuc_1534 | N/A | Click |
31 | complement(1578134..1578532) | PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_21; Lbuc_1535; phage(gi13487822) | 6e-12 | Click |
32 | complement(1578538..1578951) | hypothetical protein; Lbuc_1536 | N/A | Click |
33 | complement(1578953..1579267) | PHAGE_Lactob_A2: hypothetical protein A2p40; Lbuc_1537; phage(gi22296559) | 2e-28 | Click |
34 | complement(1579545..1581848) | PHAGE_Lactob_A2: putative primase; Lbuc_1538; phage(gi22296557) | 0.0 | Click |
35 | complement(1581860..1582453) | PHAGE_Lactob_A2: putative single stranded binding protein; Lbuc_1539; phage(gi22296556) | 4e-55 | Click |
36 | complement(1582470..1583825) | PHAGE_Lactob_A2: putative helicase; Lbuc_1540; phage(gi22296555) | 2e-143 | Click |
37 | complement(1583815..1584510) | PHAGE_Clostr_phiCP26F: hypothetical protein; Lbuc_1541; phage(gi422933952) | 3e-37 | Click |
38 | complement(1584494..1585189) | PHAGE_Lactob_Lrm1: NTP-binding protein; Lbuc_1542; phage(gi195661234) | 6e-79 | Click |
39 | complement(1585192..1586049) | PHAGE_Entero_phiEf11: putative replication protein; Lbuc_1543; phage(gi282598768) | 1e-34 | Click |
40 | complement(1586069..1586338) | hypothetical protein; Lbuc_1544 | N/A | Click |
41 | complement(1586338..1586496) | hypothetical protein; Lbuc_1545 | N/A | Click |
42 | 1586605..1586817 | hypothetical protein; Lbuc_1546 | N/A | Click |
43 | complement(1586786..1586980) | hypothetical protein; Lbuc_1547 | N/A | Click |
44 | 1587151..1587426 | hypothetical protein; Lbuc_1548 | N/A | Click |
45 | complement(1587432..1587758) | PHAGE_Lactob_Sha1: hypothetical protein; Lbuc_1549; phage(gi418489836) | 1e-25 | Click |
46 | 1587816..1588256 | hypothetical protein; Lbuc_1550 | N/A | Click |
47 | complement(1588231..1588428) | hypothetical protein; Lbuc_1551 | N/A | Click |
48 | complement(1588468..1588668) | hypothetical protein; Lbuc_1552 | N/A | Click |
49 | 1588738..1589091 | hypothetical protein; Lbuc_1553 | N/A | Click |
50 | complement(1589292..1589519) | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp07; Lbuc_1554; phage(gi209363559) | 8e-12 | Click |
51 | 1589684..1590397 | PHAGE_Brocho_BL3: gp32; Lbuc_1555; phage(gi327409424) | 4e-52 | Click |
52 | complement(1590965..1592695) | PHAGE_Equid__4: envelope glycoprotein J; Lbuc_1557; phage(gi9629801) | 3e-13 | Click |
53 | 1592934..1594067 | PHAGE_Lactob_Sha1: phage integrase; Lbuc_1558; phage(gi418489824) | 2e-100 | Click |
54 | 1594255..1594269 | attR TATGCCGACTGCAGG | N/A | Click |