Definition Lactobacillus buchneri NRRL B-30929 chromosome, complete genome.
Accession NC_015428
Length 2,506,301
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 24045..24057  attL    TGCTTACCATTGA  N/A  Click
2 complement(24058..25209)  PROPHAGE_Oceano_HTE831: integrase; Lbuc_0020; phage(gi23097608)  1e-64  Click
3 complement(25262..26122)  PHAGE_Brocho_BL3: gp41; Lbuc_0021; phage(gi327409433)  1e-05  Click
4 26275..26457  phage protein; Lbuc_0022  N/A  Click
5 26462..26758  prophage lsa1 protein; Lbuc_0023  N/A  Click
6 26959..27657  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; Lbuc_0024; phage(gi399528836)  2e-27  Click
7 27659..27775  hypothetical protein; Lbuc_0025  N/A  Click
8 27793..27924  hypothetical protein; Lbuc_0026  N/A  Click
9 27905..28030  hypothetical protein; Lbuc_0027  N/A  Click
10 complement(28027..28814)  PROPHAGE_Xantho_33913: IS1480 transposase; Lbuc_0028; phage(gi21231089)  3e-51  Click
11 29043..29282  hypothetical protein; Lbuc_0029  N/A  Click
12 29298..29705  hypothetical protein; Lbuc_0030  N/A  Click
13 29698..30462  PHAGE_Strept_YMC_2011: phage protein; Lbuc_0031; phage(gi399498702)  7e-18  Click
14 30496..31950  PHAGE_Lactoc_bIL310: helicase; Lbuc_0032; phage(gi13095886)  2e-89  Click
15 complement(32219..32326)  hypothetical protein; Lbuc_0033  N/A  Click
16 32396..32815  PHAGE_Strept_2: hypothetical protein SpyM3_0956; Lbuc_0034; phage(gi28876240)  2e-17  Click
17 32817..33236  hypothetical protein; Lbuc_0035  N/A  Click
18 complement(33498..34676)  integrase catalytic subunit; Lbuc_0036  N/A  Click
19 35228..35239  attL    CAAGGTTTTGGC  N/A  Click
20 35508..36437  PHAGE_Spirop_R8A2B: putative transposase; Lbuc_0037; phage(gi9626114)  9e-21  Click
21 37019..37330  MazG nucleotide pyrophosphohydrolase; Lbuc_0038  N/A  Click
22 37351..39096  hypothetical protein; Lbuc_0039  N/A  Click
23 39201..39212  attL    CAAAAGCTTATT  N/A  Click
24 39230..39337  hypothetical protein; Lbuc_0040  N/A  Click
25 39379..40308  PHAGE_Spirop_R8A2B: putative transposase; Lbuc_0041; phage(gi9626114)  1e-20  Click
26 41224..41235  attR    CAAAAGCTTATT  N/A  Click
27 41859..41870  attR    CAAGGTTTTGGC  N/A  Click
28 43821..43833  attR    TGCTTACCATTGA  N/A  Click
Region 2, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(538727..539998)  PROPHAGE_Staphy_N315: transposase; Lbuc_0497; phage(gi15927655)  3e-61  Click
2 complement(540217..540708)  PHAGE_Bacill_36: baseplate hub protein; Lbuc_0498; phage(gi156564128)  7e-11  Click
3 complement(540999..543710)  PHAGE_Sulfol_STSV1: hypothetical protein STSV1pORF37; Lbuc_0499; phage(gi51980163)  2e-06  Click
4 543867..544847  PHAGE_Parame_NY2A: hypothetical protein NY2A_B371L; Lbuc_0500; phage(gi157952675)  6e-21  Click
5 544880..545500  PHAGE_Bacill_GIL16c: putative lytic enzyme; Lbuc_0501; phage(gi62327545)  6e-11  Click
6 545558..546322  PHAGE_Cronob_vB_CsaP_GAP52: hypothetical protein; Lbuc_0502; phage(gi414087559)  6e-09  Click
7 546297..546626  PHAGE_Megavi_lba: thioredoxin-like protein; Lbuc_0503; phage(gi448825658)  2e-08  Click
8 complement(546635..547024)  hypothetical protein; Lbuc_0504  N/A  Click
9 547113..547667  GCN5-like N-acetyltransferase; Lbuc_0505  N/A  Click
10 547913..549310  Na+/H+ antiporter NhaC; Lbuc_0506  N/A  Click
11 549519..550133  PHAGE_Lactob_LP65: hypothetical protein LP65_gp121; Lbuc_0507; phage(gi56693169)  4e-23  Click
Region 3, total : 83 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1463072..1463893)  PHAGE_Lactob_c5: putative endolysin; Lbuc_1390; phage(gi418488198)  4e-35  Click
2 complement(1463886..1464461)  hypothetical protein; Lbuc_1391  N/A  Click
3 complement(1464474..1464791)  PHAGE_Lactoc_r1t: hypothetical protein r1tp46; Lbuc_1392; phage(gi23455765)  5e-16  Click
4 1464987..1464998  attL    AATTCATAAAAA  N/A  Click
5 complement(1465007..1465396)  hypothetical protein; Lbuc_1393  N/A  Click
6 complement(1465408..1466973)  PHAGE_Lactob_Lj771: hypothetical protein LJ771_049; Lbuc_1394; phage(gi163932148)  5e-09  Click
7 complement(1466973..1467590)  PHAGE_Lister_B054: gp25; Lbuc_1395; phage(gi157325309)  5e-11  Click
8 complement(1467583..1468758)  PHAGE_Lister_B054: gp24; Lbuc_1396; phage(gi157325308)  7e-53  Click
9 complement(1468748..1469155)  PHAGE_Lister_B054: gp23; Lbuc_1397; phage(gi157325307)  8e-07  Click
10 complement(1469167..1469610)  hypothetical protein; Lbuc_1398  N/A  Click
11 complement(1469623..1470672)  PHAGE_Lister_B054: gp21; Lbuc_1399; phage(gi157325305)  3e-17  Click
12 complement(1470665..1471093)  PHAGE_Lister_B054: gp20; Lbuc_1400; phage(gi157325304)  9e-15  Click
13 complement(1471107..1472039)  PHAGE_Lister_B054: gp19; Lbuc_1401; phage(gi157325303)  7e-13  Click
14 complement(1472039..1477969)  PHAGE_Lactoc_bIL286: tail protein; Lbuc_1402; phage(gi13095795)  5e-90  Click
15 complement(1478000..1478179)  hypothetical protein; Lbuc_1403  N/A  Click
16 complement(1478214..1478564)  PHAGE_Lister_B054: gp16; Lbuc_1404; phage(gi157325300)  1e-06  Click
17 complement(1478646..1479062)  PHAGE_Lister_B054: gp15; Lbuc_1405; phage(gi157325299)  1e-15  Click
18 complement(1479076..1480131)  PHAGE_Lister_B054: gp14; Lbuc_1406; phage(gi157325298)  3e-49  Click
19 complement(1480134..1480616)  hypothetical protein; Lbuc_1407  N/A  Click
20 complement(1480600..1480980)  hypothetical protein; Lbuc_1408  N/A  Click
21 complement(1480982..1481572)  PHAGE_Lister_B054: gp11; Lbuc_1409; phage(gi157325295)  1e-22  Click
22 complement(1481569..1481949)  hypothetical protein; Lbuc_1410  N/A  Click
23 complement(1481963..1482343)  PHAGE_Lister_B054: gp9; Lbuc_1411; phage(gi157325293)  2e-05  Click
24 complement(1482355..1483242)  PHAGE_Lister_B054: gp8; Lbuc_1412; phage(gi157325292)  2e-46  Click
25 complement(1483262..1483768)  PHAGE_Lister_B054: gp7; Lbuc_1413; phage(gi157325291)  1e-09  Click
26 complement(1483768..1484916)  PHAGE_Lister_B054: gp6; Lbuc_1414; phage(gi157325290)  3e-70  Click
27 complement(1484929..1485429)  PHAGE_Acanth_1: hypothetical protein ATCV1_z266L; Lbuc_1415; phage(gi155371213)  3e-05  Click
28 complement(1485552..1486394)  PHAGE_Lister_B054: gp4; Lbuc_1416; phage(gi157325288)  9e-23  Click
29 complement(1486403..1487848)  PHAGE_Lister_B054: gp3; Lbuc_1417; phage(gi157325287)  7e-66  Click
30 complement(1487860..1489311)  PHAGE_Lister_B054: TerL; Lbuc_1418; phage(gi157325286)  4e-151  Click
31 complement(1489292..1489780)  PHAGE_Entero_phiFL2A: hypothetical protein; Lbuc_1419; phage(gi281416524)  7e-21  Click
32 complement(1489870..1490172)  hypothetical protein; Lbuc_1420  N/A  Click
33 complement(1490314..1490841)  hypothetical protein; Lbuc_1421  N/A  Click
34 complement(1490953..1491135)  hypothetical protein; Lbuc_1422  N/A  Click
35 complement(1491146..1491463)  hypothetical protein; Lbuc_1423  N/A  Click
36 complement(1491453..1491623)  PHAGE_Lactob_Sha1: HNH nuclease; Lbuc_1424; phage(gi418489799)  5e-06  Click
37 complement(1492207..1492671)  PHAGE_Lactob_A2: hypothetical protein A2p53; Lbuc_1425; phage(gi22296572)  4e-08  Click
38 complement(1492764..1492994)  hypothetical protein; Lbuc_1426  N/A  Click
39 complement(1493008..1493169)  hypothetical protein; Lbuc_1427  N/A  Click
40 complement(1493169..1493717)  PHAGE_Mycoba_LeBron: gp117; Lbuc_1428; phage(gi304361052)  2e-10  Click
41 complement(1493814..1493999)  hypothetical protein; Lbuc_1429  N/A  Click
42 complement(1493996..1494385)  PHAGE_Lactob_phig1e: possible sensor protein; Lbuc_1430; phage(gi23455793)  3e-11  Click
43 complement(1494382..1495056)  PHAGE_Lactob_Nu: putative methylase; Lbuc_1431; phage(gi78000014)  6e-66  Click
44 complement(1495053..1495268)  hypothetical protein; Lbuc_1432  N/A  Click
45 complement(1495265..1495435)  hypothetical protein; Lbuc_1433  N/A  Click
46 complement(1495435..1495677)  hypothetical protein; Lbuc_1434  N/A  Click
47 complement(1495690..1496121)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp41; Lbuc_1435; phage(gi195661241)  2e-27  Click
48 complement(1496132..1496860)  PHAGE_Lactoc_ul36: putative anti-repressor; Lbuc_1436; phage(gi21716079)  6e-38  Click
49 complement(1496873..1497121)  hypothetical protein; Lbuc_1437  N/A  Click
50 complement(1497102..1497416)  hypothetical protein; Lbuc_1438  N/A  Click
51 complement(1497413..1498282)  PHAGE_Entero_EF62phi: D replication protein DC; Lbuc_1439; phage(gi384519773)  1e-21  Click
52 1498333..1498617  hypothetical protein; Lbuc_1440  N/A  Click
53 complement(1498614..1498769)  hypothetical protein; Lbuc_1441  N/A  Click
54 complement(1498781..1499602)  PHAGE_Entero_EF62phi: dD and phage-associated domain protein; Lbuc_1442; phage(gi384519772)  2e-57  Click
55 complement(1499614..1500465)  PHAGE_Lactob_LF1: hypothetical protein; Lbuc_1443; phage(gi418489429)  8e-61  Click
56 complement(1500398..1501345)  PHAGE_Strept_1: hypothetical protein EJ-1p21; Lbuc_1444; phage(gi39653695)  2e-66  Click
57 complement(1501349..1501669)  hypothetical protein; Lbuc_1445  N/A  Click
58 complement(1501666..1501818)  hypothetical protein; Lbuc_1446  N/A  Click
59 complement(1501808..1502026)  hypothetical protein; Lbuc_1447  N/A  Click
60 complement(1502170..1502466)  hypothetical protein; Lbuc_1448  N/A  Click
61 complement(1502444..1502956)  helix-turn-helix domain-containing protein; Lbuc_1449  N/A  Click
62 complement(1503066..1503179)  hypothetical protein; Lbuc_1450  N/A  Click
63 complement(1503176..1503397)  PHAGE_Lister_A118: putative repressor protein; Lbuc_1451; phage(gi16798820)  8e-15  Click
64 1503540..1503917  PHAGE_Lister_A118: putative repressor protein; Lbuc_1452; phage(gi16798819)  2e-19  Click
65 1503910..1504326  PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp4; Lbuc_1453; phage(gi56694873)  1e-11  Click
66 1504346..1505224  hypothetical protein; Lbuc_1454  N/A  Click
67 1505241..1505609  hypothetical protein; Lbuc_1455  N/A  Click
68 1505666..1506223  hypothetical protein; Lbuc_1456  N/A  Click
69 complement(1506197..1506403)  hypothetical protein; Lbuc_1457  N/A  Click
70 1506543..1506872  hypothetical protein; Lbuc_1458  N/A  Click
71 1506977..1508182  PHAGE_Lister_B054: gp38; Lbuc_1459; phage(gi157325322)  4e-51  Click
72 complement(1508352..1508717)  50S ribosomal protein L7/L12; Lbuc_1460  N/A  Click
73 complement(1508757..1509269)  50S ribosomal protein L10; Lbuc_1461  N/A  Click
74 complement(1509477..1510184)  50S ribosomal protein L1; Lbuc_1462  N/A  Click
75 complement(1510281..1510706)  50S ribosomal protein L11; Lbuc_1463  N/A  Click
76 complement(1510827..1511675)  hypothetical protein; Lbuc_1464  N/A  Click
77 complement(1511695..1512243)  PHAGE_Synech_S_CRM01: NusG antitermination factor; Lbuc_1465; phage(gi333798264)  3e-09  Click
78 complement(1512349..1512525)  preprotein translocase subunit SecE; Lbuc_1466  N/A  Click
79 complement(1512549..1512698)  50S ribosomal protein L33; Lbuc_1467  N/A  Click
80 complement(1512750..1513307)  RNA polymerase sigma factor, sigma-70 family; Lbuc_1468  N/A  Click
81 complement(1513455..1513988)  hypothetical protein; Lbuc_1469  N/A  Click
82 complement(1514004..1514804)  TrmH family RNA methyltransferase; Lbuc_1470  N/A  Click
83 complement(1514794..1515204)  ribonuclease III; Lbuc_1471  N/A  Click
84 complement(1515213..1516619)  PHAGE_Megavi_lba: cysteinyl-tRNA synthetase; Lbuc_1472; phage(gi448825804)  7e-45  Click
85 1516670..1516683  attL    TTGTTTTATTACTT  N/A  Click
86 complement(1516742..1517767)  PHAGE_Staphy_phiPV83: transposase; Lbuc_1473; phage(gi9635740)  4e-42  Click
87 1517887..1517900  attR    TTGTTTTATTACTT  N/A  Click
88 1525855..1525866  attR    AATTCATAAAAA  N/A  Click
Region 4, total : 52 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1549566..1550837  PROPHAGE_Staphy_N315: transposase; Lbuc_1504; phage(gi15927655)  3e-61  Click
2 1550924..1550938  attL    TATGCCGACTGCAGG  N/A  Click
3 complement(1551155..1551406)  PHAGE_Lactob_Sha1: phage-related holin; Lbuc_1505; phage(gi418489822)  5e-12  Click
4 complement(1551406..1552230)  PHAGE_Lactob_c5: putative endolysin; Lbuc_1506; phage(gi418488198)  1e-32  Click
5 complement(1552243..1552710)  hypothetical protein; Lbuc_1507  N/A  Click
6 complement(1553111..1553284)  hypothetical protein; Lbuc_1508  N/A  Click
7 complement(1553302..1553712)  hypothetical protein; Lbuc_1509  N/A  Click
8 complement(1553727..1555610)  PHAGE_Lactob_Sha1: prophage Lp2 protein 53-like protein; Lbuc_1510; phage(gi418489820)  8e-29  Click
9 complement(1555603..1555743)  hypothetical protein; Lbuc_1511  N/A  Click
10 complement(1555753..1556586)  PHAGE_Cyanop_P_RSM6: hypothetical protein; Lbuc_1512; phage(gi472341641)  4e-07  Click
11 complement(1556583..1559165)  PHAGE_Lactob_Sha1: minor structural protein gp89-like protein; Lbuc_1513; phage(gi418489816)  4e-96  Click
12 complement(1561197..1566773)  PHAGE_Lactoc_bIL286: tail protein; Lbuc_1516; phage(gi13095795)  6e-166  Click
13 complement(1566982..1567359)  PHAGE_Lactob_Nu: putative tail component; Lbuc_1517; phage(gi78000031)  8e-12  Click
14 complement(1567418..1568104)  PHAGE_Lactob_phiAT3: putative major tail protein; Lbuc_1518; phage(gi48697269)  1e-31  Click
15 complement(1568105..1568494)  PHAGE_Strept_YMC_2011: putative tail component protein; Lbuc_1519; phage(gi399498727)  3e-11  Click
16 complement(1568494..1568892)  PHAGE_Lactob_Nu: putative head-tail joining protein; Lbuc_1520; phage(gi77999993)  4e-18  Click
17 complement(1568885..1569247)  PHAGE_Strept_Sfi19: putative head-tail joining protein; Lbuc_1521; phage(gi9632902)  5e-14  Click
18 complement(1569237..1569527)  PHAGE_Lactoc_bIL309: Orf44; Lbuc_1522; phage(gi13095849)  3e-10  Click
19 complement(1569591..1570832)  PHAGE_Lactob_Sha1: HK97 family phage major capsid protein; Lbuc_1523; phage(gi418489806)  2e-86  Click
20 complement(1570836..1571537)  PHAGE_Lactob_Sha1: protease subunit of ATP-dependent Clp protease; Lbuc_1524; phage(gi418489805)  3e-53  Click
21 complement(1571518..1572666)  PHAGE_Lactob_Sha1: phage portal protein; Lbuc_1525; phage(gi418489804)  1e-47  Click
22 complement(1572680..1572844)  hypothetical protein; Lbuc_1526  N/A  Click
23 complement(1572905..1574800)  PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; Lbuc_1527; phage(gi418489802)  3e-125  Click
24 complement(1574800..1575318)  PHAGE_Lactob_1: terminase small subunit; Lbuc_1528; phage(gi219563198)  9e-28  Click
25 complement(1575907..1576362)  PHAGE_Lactob_1: HNH nuclease; Lbuc_1529; phage(gi219563244)  3e-30  Click
26 complement(1576340..1577236)  hypothetical protein; Lbuc_1530  N/A  Click
27 complement(1577295..1577486)  hypothetical protein; Lbuc_1531  N/A  Click
28 complement(1577525..1577716)  hypothetical protein; Lbuc_1532  N/A  Click
29 complement(1577713..1577928)  hypothetical protein; Lbuc_1533  N/A  Click
30 complement(1577925..1578137)  hypothetical protein; Lbuc_1534  N/A  Click
31 complement(1578134..1578532)  PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_21; Lbuc_1535; phage(gi13487822)  6e-12  Click
32 complement(1578538..1578951)  hypothetical protein; Lbuc_1536  N/A  Click
33 complement(1578953..1579267)  PHAGE_Lactob_A2: hypothetical protein A2p40; Lbuc_1537; phage(gi22296559)  2e-28  Click
34 complement(1579545..1581848)  PHAGE_Lactob_A2: putative primase; Lbuc_1538; phage(gi22296557)  0.0  Click
35 complement(1581860..1582453)  PHAGE_Lactob_A2: putative single stranded binding protein; Lbuc_1539; phage(gi22296556)  4e-55  Click
36 complement(1582470..1583825)  PHAGE_Lactob_A2: putative helicase; Lbuc_1540; phage(gi22296555)  2e-143  Click
37 complement(1583815..1584510)  PHAGE_Clostr_phiCP26F: hypothetical protein; Lbuc_1541; phage(gi422933952)  3e-37  Click
38 complement(1584494..1585189)  PHAGE_Lactob_Lrm1: NTP-binding protein; Lbuc_1542; phage(gi195661234)  6e-79  Click
39 complement(1585192..1586049)  PHAGE_Entero_phiEf11: putative replication protein; Lbuc_1543; phage(gi282598768)  1e-34  Click
40 complement(1586069..1586338)  hypothetical protein; Lbuc_1544  N/A  Click
41 complement(1586338..1586496)  hypothetical protein; Lbuc_1545  N/A  Click
42 1586605..1586817  hypothetical protein; Lbuc_1546  N/A  Click
43 complement(1586786..1586980)  hypothetical protein; Lbuc_1547  N/A  Click
44 1587151..1587426  hypothetical protein; Lbuc_1548  N/A  Click
45 complement(1587432..1587758)  PHAGE_Lactob_Sha1: hypothetical protein; Lbuc_1549; phage(gi418489836)  1e-25  Click
46 1587816..1588256  hypothetical protein; Lbuc_1550  N/A  Click
47 complement(1588231..1588428)  hypothetical protein; Lbuc_1551  N/A  Click
48 complement(1588468..1588668)  hypothetical protein; Lbuc_1552  N/A  Click
49 1588738..1589091  hypothetical protein; Lbuc_1553  N/A  Click
50 complement(1589292..1589519)  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp07; Lbuc_1554; phage(gi209363559)  8e-12  Click
51 1589684..1590397  PHAGE_Brocho_BL3: gp32; Lbuc_1555; phage(gi327409424)  4e-52  Click
52 complement(1590965..1592695)  PHAGE_Equid__4: envelope glycoprotein J; Lbuc_1557; phage(gi9629801)  3e-13  Click
53 1592934..1594067  PHAGE_Lactob_Sha1: phage integrase; Lbuc_1558; phage(gi418489824)  2e-100  Click
54 1594255..1594269  attR    TATGCCGACTGCAGG  N/A  Click