Definition Alicycliphilus denitrificans K601 chromosome, complete genome.
Accession NC_015422
Length 4,995,263
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 424572..424584  attL    CCGGGCCATCCAA  N/A  Click
2 430106..434335  PHAGE_Wisean_virus: hypothetical protein; Alide2_0410; phage(gi339906153)  2e-43  Click
3 434455..435021  LemA family protein; Alide2_0411  N/A  Click
4 435018..436385  sun protein; Alide2_0412  N/A  Click
5 436429..437010  hypothetical protein; Alide2_0413  N/A  Click
6 437007..439295  PHAGE_Ectoca_1: EsV-1-65; Alide2_0414; phage(gi13242537)  1e-05  Click
7 439335..440030  PHAGE_Ectoca_1: EsV-1-65; Alide2_0415; phage(gi13242537)  4e-07  Click
8 440092..440167  tRNA  N/A  Click
9 complement(440383..440643)  PHAGE_Burkho_2: gp9, phage head-tail adaptor, putative; Alide2_0416; phage(gi134288641)  8e-09  Click
10 complement(440683..441516)  PROPHAGE_Xantho_33913: IS1477 transposase; Alide2_0417; phage(gi77747809)  2e-104  Click
11 complement(441549..441815)  PROPHAGE_Xantho_33913: IS1477 transposase; Alide2_0418; phage(gi21231080)  1e-30  Click
12 complement(441958..442233)  PHAGE_Entero_mEp235: head-tail connector II; Alide2_0419; phage(gi428781817)  2e-05  Click
13 443010..443022  attR    CCGGGCCATCCAA  N/A  Click
14 443271..443283  attL    CGATGCGCGGGTC  N/A  Click
15 complement(444078..444341)  hypothetical protein; Alide2_0422  N/A  Click
16 complement(444338..444511)  hypothetical protein; Alide2_0423  N/A  Click
17 complement(444508..444693)  hypothetical protein; Alide2_0424  N/A  Click
18 complement(444693..445772)  PHAGE_Burkho_2: gp6, major capsid head protein; Alide2_0425; phage(gi134288639)  4e-13  Click
19 complement(445865..446272)  hypothetical protein; Alide2_0426  N/A  Click
20 complement(446259..446603)  hypothetical protein; Alide2_0427  N/A  Click
21 complement(446600..447796)  PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp22; Alide2_0428; phage(gi56694890)  8e-05  Click
22 complement(447793..448257)  hypothetical protein; Alide2_0429  N/A  Click
23 complement(448268..448468)  Prophage CP4-57 regulatory protein; Alide2_0430  N/A  Click
24 complement(448949..449143)  hypothetical protein; Alide2_0431  N/A  Click
25 complement(449100..449366)  hypothetical protein; Alide2_0432  N/A  Click
26 complement(449467..450690)  PHAGE_Stenot_S1: putative integrase; Alide2_0433; phage(gi213163927)  3e-116  Click
27 452521..452533  attR    CGATGCGCGGGTC  N/A  Click
Region 2, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 679004..679017  attL    TGGGCCATGCCGTG  N/A  Click
2 complement(689844..691226)  PHAGE_Lactob_phig1e: minor capsid protein; Alide2_0667; phage(gi23455811)  9e-16  Click
3 691398..692630  PHAGE_Cronob_vB_CsaM_GAP32: tyrosyl-tRNA synthetase; Alide2_0668; phage(gi414087049)  7e-20  Click
4 complement(692692..693657)  PHAGE_Burkho_phi1026b: gp58; Alide2_0669; phage(gi38707948)  3e-25  Click
5 693709..695133  PHAGE_Acanth_mimivirus: probable UDP-N-acetylglucosamine pyrophosphorylase; Alide2_0670; phage(gi311978096)  2e-22  Click
6 695130..695912  PHAGE_Ectoca_1: EsV-1-65; Alide2_0671; phage(gi13242537)  2e-08  Click
7 complement(695941..696276)  MerR family transcriptional regulator; Alide2_0672  N/A  Click
8 complement(696279..697274)  PHAGE_Acanth_mimivirus: DnaJ-like protein; Alide2_0673; phage(gi311977638)  1e-12  Click
9 complement(697379..697900)  AsnC family transcriptional regulator; Alide2_0674  N/A  Click
10 698005..699915  PHAGE_Parame_NY2A: hypothetical protein NY2A_B143R; Alide2_0675; phage(gi157952447)  2e-146  Click
11 complement(700592..701395)  PHAGE_Strept_7201: ORF5; Alide2_0676; phage(gi9634631)  1e-07  Click
12 701325..701338  attR    TGGGCCATGCCGTG  N/A  Click
13 complement(701385..702911)  PROPHAGE_Escher_CFT073: transposase; Alide2_0677; phage(gi26248360)  1e-15  Click
Region 3, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1519418..1521442  PHAGE_Parame_AR158: hypothetical protein AR158_C785L; Alide2_1437; phage(gi157953975)  3e-30  Click
2 1521456..1522088  potassium-transporting ATPase subunit C; Alide2_1438  N/A  Click
3 1522104..1524833  PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; Alide2_1439; phage(gi197322490)  3e-12  Click
4 1524838..1525548  PHAGE_Ectoca_1: EsV-1-65; Alide2_1440; phage(gi13242537)  9e-07  Click
5 1525625..1526002  PROPHAGE_Brucel_1330: ISBm1, transposase orfA; Alide2_1441; phage(gi23501424)  2e-24  Click
6 1525999..1526385  PROPHAGE_Shewan_MR-1: ISSod6, transposase; Alide2_1442; phage(gi24374783)  2e-20  Click
7 1526573..1527244  hypothetical protein; Alide2_1443  N/A  Click
8 1527241..1529979  PHAGE_Pseudo_MP38: putative tail component protein; Alide2_1444; phage(gi215479964)  1e-09  Click
9 complement(1530511..1531005)  PHAGE_Helico_2: dihydrofolate reductase; Alide2_1446; phage(gi370703057)  2e-24  Click
10 complement(1531002..1531817)  PHAGE_Bacter_8: putatitve thymidylate synthase; Alide2_1447; phage(gi200003972)  1e-81  Click
Region 4, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2111895..2113853  PHAGE_Stenot_S1: putative terminase large subunit; Alide2_2018; phage(gi213163902)  4e-80  Click
2 2113883..2114374  hypothetical protein; Alide2_2019  N/A  Click
3 2114374..2114766  hypothetical protein; Alide2_2020  N/A  Click
4 2114766..2114987  hypothetical protein; Alide2_2021  N/A  Click
5 2114989..2116503  PHAGE_Stenot_S1: putative portal protein; Alide2_2022; phage(gi213163905)  2e-63  Click
6 2116537..2117778  PHAGE_Klebsi_phiKO2: putative head maturation protease; Alide2_2023; phage(gi46402091)  2e-53  Click
7 2117780..2118157  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; Alide2_2024; phage(gi428782730)  3e-10  Click
8 2118160..2119164  PHAGE_Pseudo_KPP10: putative major capsid protein; Alide2_2025; phage(gi327198179)  3e-37  Click
9 2119164..2119466  hypothetical protein; Alide2_2026  N/A  Click
10 2119471..2119917  PHAGE_Synech_S_CBS1: hypothetical protein; Alide2_2027; phage(gi356870805)  2e-12  Click
11 2119923..2120144  hypothetical protein; Alide2_2028  N/A  Click
12 2120141..2120893  PHAGE_Pseudo_B3: hypothetical protein B3ORF43; Alide2_2029; phage(gi56692612)  4e-41  Click
13 2120905..2121303  hypothetical protein; Alide2_2030  N/A  Click
14 2121300..2121509  hypothetical protein; Alide2_2031  N/A  Click
15 2121484..2122128  hypothetical protein; Alide2_2032  N/A  Click
16 2122130..2126167  PHAGE_Pseudo_MP22: putative tail component protein; Alide2_2033; phage(gi157835013)  2e-64  Click
17 2126204..2126614  PHAGE_Stenot_S1: hypothetical protein StPS1_gp18; Alide2_2034; phage(gi213163917)  2e-07  Click
18 2126614..2130222  PHAGE_Stenot_S1: putative tail protein b; Alide2_2035; phage(gi213163918)  6e-172  Click
Region 5, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3190657..3190669  attL    TGGAACGATCCCG  N/A  Click
2 complement(3190925..3191839)  PROPHAGE_Xantho_306: transposase; Alide2_3052; phage(gi21243165)  1e-121  Click
3 complement(3191836..3192159)  PHAGE_Stx2_c_1717: putative transposase; Alide2_3053; phage(gi209447180)  6e-30  Click
4 3192328..3193665  hypothetical protein; Alide2_3054  N/A  Click
5 complement(3194285..3195100)  PROPHAGE_Xantho_33913: IS1480 transposase; Alide2_3055; phage(gi21231089)  1e-13  Click
6 3195277..3196050  PHAGE_Entero_vB_KleM_RaK2: putative nuclease; Alide2_3056; phage(gi422937180)  3e-21  Click
7 complement(3196333..3197847)  PHAGE_Stx2_c_1717: transposase; Alide2_3057; phage(gi209447153)  3e-85  Click
8 complement(3197930..3198262)  PHAGE_Stx2_c_1717: transposase; Alide2_3058; phage(gi209447152)  1e-07  Click
9 complement(3198259..3198687)  PHAGE_Stx2_c_1717: truncated transposase; Alide2_3059; phage(gi209447151)  9e-10  Click
10 3198747..3199073  PHAGE_Vibrio_VP882: phage-related tail protein; Alide2_3060; phage(gi126010872)  5e-09  Click
11 3199176..3200150  PHAGE_Mycoba_Pipefish: gp96; Alide2_3061; phage(gi109521936)  2e-15  Click
12 3200291..3201319  PHAGE_Bacill_1: Putative endonuclease; Alide2_3062; phage(gi155042966)  4e-49  Click
13 3204637..3204649  attR    TGGAACGATCCCG  N/A  Click
Region 6, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3649057..3649069  attL    AGCTATCAAAAAA  N/A  Click
2 complement(3662589..3664154)  PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; Alide2_3521; phage(gi163932195)  3e-05  Click
3 3664259..3664558  30S ribosomal protein S20; Alide2_3522  N/A  Click
4 complement(3664773..3665453)  hypothetical protein; Alide2_3523  N/A  Click
5 complement(3665474..3665746)  hypothetical protein; Alide2_3524  N/A  Click
6 3665750..3665761  attL    TGATGATCAGAT  N/A  Click
7 complement(3665756..3667270)  PHAGE_Stx2_c_1717: transposase; Alide2_3525; phage(gi209447153)  3e-85  Click
8 complement(3667353..3667685)  PHAGE_Stx2_c_1717: transposase; Alide2_3526; phage(gi209447152)  1e-07  Click
9 complement(3667682..3668110)  PHAGE_Stx2_c_1717: truncated transposase; Alide2_3527; phage(gi209447151)  9e-10  Click
10 complement(3668325..3669239)  PROPHAGE_Xantho_306: transposase; Alide2_3528; phage(gi21243165)  1e-121  Click
11 complement(3669236..3669559)  PHAGE_Stx2_c_1717: putative transposase; Alide2_3529; phage(gi209447180)  6e-30  Click
12 complement(3669924..3670997)  putative porin transmembrane protein; Alide2_3531  N/A  Click
13 3671535..3671546  attR    TGATGATCAGAT  N/A  Click
14 complement(3672034..3672837)  PROPHAGE_Escher_CFT073: transposase/IS protein; Alide2_3532; phage(gi26248359)  5e-34  Click
15 complement(3672827..3674353)  PROPHAGE_Escher_CFT073: transposase; Alide2_3533; phage(gi26248360)  1e-15  Click
16 3684138..3684150  attR    AGCTATCAAAAAA  N/A  Click