Definition | Pseudomonas mendocina NK-01 chromosome, complete genome. |
---|---|
Accession | NC_015410 |
Length | 5,434,353 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 9 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1200096..1200452 | PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p32; MDS_1094; phage(gi109289967) | 1e-06 | Click |
2 | complement(1200449..1200613) | hypothetical protein; MDS_1093 | N/A | Click |
3 | 1200899..1200972 | tRNA | N/A | Click |
4 | 1200930..1200959 | attL ATTCATAATGCTGATGTCCCAGGTTCAAGT | N/A | Click |
5 | complement(1201499..1201927) | PHAGE_Synech_S_CAM1: glutaredoxin; MDS_1095; phage(gi472339503) | 3e-05 | Click |
6 | complement(1201998..1202306) | hypothetical protein; MDS_1096 | N/A | Click |
7 | complement(1202370..1203362) | PHAGE_Erwini_ENT90: phage integrase family protein; MDS_1097; phage(gi431810942) | 6e-76 | Click |
8 | complement(1203359..1204546) | PHAGE_Pseudo_Pf1: hypothetical protein Pf1p08; MDS_1098; phage(gi9625374) | 3e-126 | Click |
9 | complement(1204707..1205936) | PHAGE_Vibrio_Vf33: Vpf380; MDS_1099; phage(gi49248527) | 2e-09 | Click |
10 | complement(1205940..1206269) | hypothetical protein; MDS_1100 | N/A | Click |
11 | complement(1206279..1207691) | PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; MDS_1101; phage(gi15595921) | 6e-58 | Click |
12 | 1214588..1214617 | attR ATTCATAATGCTGATGTCCCAGGTTCAAGT | N/A | Click |
Region 2, total : 51 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2362392..2362420 | attL GAGTTCGAGTCTCTCCGTCCGCACCATCT | N/A | Click |
2 | complement(2364894..2366060) | PHAGE_Pseudo_phiCTX: integrase; MDS_2150; phage(gi17313264) | 1e-158 | Click |
3 | complement(2366229..2366423) | hypothetical protein; MDS_2151 | N/A | Click |
4 | complement(2366416..2366682) | hypothetical protein; MDS_2152 | N/A | Click |
5 | complement(2366679..2367917) | phosphoadenosine phosphosulfate reductase; MDS_2153 | N/A | Click |
6 | complement(2367914..2368540) | PHAGE_Salmon_SSU5: hypothetical protein; MDS_2154; phage(gi410491510) | 9e-20 | Click |
7 | complement(2368537..2368755) | hypothetical protein; MDS_2155 | N/A | Click |
8 | complement(2368745..2368999) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp43; MDS_2156; phage(gi17313260) | 9e-19 | Click |
9 | complement(2369059..2370018) | hypothetical protein; MDS_2157 | N/A | Click |
10 | complement(2370075..2370389) | PHAGE_Pseudo_1: hypothetical protein 201phi2-1p308; MDS_2158; phage(gi189490460) | 3e-18 | Click |
11 | complement(2370386..2371210) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; MDS_2159; phage(gi17313257) | 2e-25 | Click |
12 | complement(2371411..2374260) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; MDS_2160; phage(gi17313257) | 0.0 | Click |
13 | complement(2374266..2374514) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp39; MDS_2161; phage(gi17313256) | 8e-07 | Click |
14 | complement(2374588..2374866) | hypothetical protein; MDS_2162 | N/A | Click |
15 | complement(2374863..2375171) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp37; MDS_2163; phage(gi17313254) | 5e-25 | Click |
16 | complement(2375168..2375647) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp36; MDS_2164; phage(gi17313253) | 2e-50 | Click |
17 | complement(2375677..2375880) | PHAGE_Burkho_BcepMu: gp16; MDS_2165; phage(gi48696926) | 9e-08 | Click |
18 | 2375940..2376296 | PHAGE_Burkho_phiE202: gp21; MDS_2166; phage(gi134288765) | 1e-21 | Click |
19 | 2376319..2376957 | PHAGE_Vibrio_kappa: putative NAD-dependent DNA ligase; MDS_2167; phage(gi165970237) | 5e-18 | Click |
20 | 2377025..2377306 | PHAGE_Entero_PsP3: gp28; MDS_2168; phage(gi41057381) | 8e-12 | Click |
21 | 2379030..2379518 | hypothetical protein; MDS_2169 | N/A | Click |
22 | 2379540..2380166 | hypothetical protein; MDS_2170 | N/A | Click |
23 | 2380281..2380712 | PHAGE_Cronob_ENT39118: protein umuD; MDS_2171; phage(gi431811072) | 8e-24 | Click |
24 | 2380712..2381971 | PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; MDS_2172; phage(gi399528790) | 5e-113 | Click |
25 | 2382052..2382237 | hypothetical protein; MDS_2173 | N/A | Click |
26 | complement(2382286..2382705) | hypothetical protein; MDS_2174 | N/A | Click |
27 | complement(2383253..2384515) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp30; MDS_2175; phage(gi17313247) | 4e-144 | Click |
28 | complement(2384512..2384952) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp29; MDS_2176; phage(gi17313246) | 4e-59 | Click |
29 | complement(2384959..2387511) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp28; MDS_2177; phage(gi17313245) | 1e-176 | Click |
30 | complement(2387635..2387943) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp26; MDS_2178; phage(gi17313243) | 1e-16 | Click |
31 | complement(2388021..2388536) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp25; MDS_2179; phage(gi17313242) | 2e-61 | Click |
32 | complement(2388566..2389756) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp24; MDS_2180; phage(gi17313241) | 8e-164 | Click |
33 | complement(2389916..2390500) | PHAGE_Ralsto_phiRSA1: tail fiber assembly-like protein; MDS_2181; phage(gi145708099) | 7e-19 | Click |
34 | complement(2390511..2391812) | PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; MDS_2182; phage(gi145708097) | 1e-74 | Click |
35 | complement(2391800..2392423) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp21; MDS_2183; phage(gi17313238) | 2e-60 | Click |
36 | complement(2392420..2393325) | PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; MDS_2184; phage(gi17313237) | 4e-107 | Click |
37 | complement(2393322..2393666) | PHAGE_Pseudo_phiCTX: predicted baseplate; MDS_2185; phage(gi17313236) | 1e-33 | Click |
38 | complement(2393669..2393962) | PHAGE_Yersin_phiR1_37: hypothetical protein; MDS_2186; phage(gi358356625) | 5e-24 | Click |
39 | complement(2393971..2394375) | PHAGE_Pseudo_phiCTX: predicted baseplate; MDS_2187; phage(gi17313235) | 1e-25 | Click |
40 | complement(2394449..2394904) | PHAGE_Pseudo_phiCTX: predicted tail completion; MDS_2188; phage(gi17313233) | 9e-41 | Click |
41 | complement(2394897..2395424) | PHAGE_Pseudo_phiCTX: predicted tail completion; MDS_2189; phage(gi17313232) | 9e-49 | Click |
42 | complement(2395530..2395973) | PHAGE_Pseudo_phiCTX: predicted lysis; MDS_2190; phage(gi17313230) | 3e-25 | Click |
43 | complement(2395970..2396827) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp12; MDS_2191; phage(gi17313229) | 3e-88 | Click |
44 | complement(2396824..2397147) | PHAGE_Pseudo_F10: Putative Holin; MDS_2192; phage(gi148912825) | 2e-18 | Click |
45 | complement(2397131..2397616) | PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; MDS_2193; phage(gi418489075) | 2e-11 | Click |
46 | complement(2397607..2397816) | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp09; MDS_2194; phage(gi17313226) | 1e-16 | Click |
47 | complement(2397816..2398277) | PHAGE_Pseudo_phiCTX: predicted capsid completion protein; MDS_2195; phage(gi17313224) | 2e-35 | Click |
48 | complement(2398382..2399089) | PHAGE_Pseudo_phiCTX: predicted terminase subunit; MDS_2196; phage(gi17313223) | 6e-67 | Click |
49 | complement(2399101..2400108) | PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; MDS_2197; phage(gi145708082) | 1e-129 | Click |
50 | complement(2400152..2401003) | PHAGE_Pseudo_phiCTX: presumed capsid scaffold; MDS_2198; phage(gi17313221) | 6e-72 | Click |
51 | 2401147..2402904 | PHAGE_Pseudo_phiCTX: predicted DNA-dependent ATPase terminase subunit; MDS_2199; phage(gi17313220) | 0.0 | Click |
52 | 2402905..2403966 | PHAGE_Pseudo_phiCTX: predicted capsid packaging protein; MDS_2200; phage(gi17313219) | 1e-139 | Click |
53 | 2404702..2404730 | attR GAGTTCGAGTCTCTCCGTCCGCACCATCT | N/A | Click |
Region 3, total : 11 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2841354..2841366 | attL ATGGCCTGCGCCA | N/A | Click |
2 | 2851682..2852158 | PHAGE_Pseudo_Pf1: hypothetical protein Pf1p12; MDS_2601; phage(gi9625378) | 1e-08 | Click |
3 | 2852155..2852466 | hypothetical protein; MDS_2602 | N/A | Click |
4 | 2852828..2853199 | hypothetical protein; MDS_2603 | N/A | Click |
5 | 2853215..2853394 | hypothetical protein; MDS_2604 | N/A | Click |
6 | 2853416..2853607 | hypothetical protein; MDS_2605 | N/A | Click |
7 | 2853619..2853825 | PHAGE_Ralsto_RSS0: major coat protein; MDS_2606; phage(gi423262457) | 5e-05 | Click |
8 | 2853962..2855332 | PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; MDS_2607; phage(gi15595921) | 2e-34 | Click |
9 | 2855334..2855654 | PHAGE_Ralsto_RSS0: hypothetical protein; MDS_2608; phage(gi423262461) | 3e-06 | Click |
10 | 2855654..2856814 | PHAGE_Ralsto_RSS0: hypothetical protein; MDS_2609; phage(gi423262462) | 7e-27 | Click |
11 | 2856995..2858272 | PHAGE_Pseudo_Pf1: hypothetical protein Pf1p08; MDS_2610; phage(gi9625374) | 3e-133 | Click |
12 | 2857902..2857914 | attR ATGGCCTGCGCCA | N/A | Click |
13 | 2858272..2859261 | PROPHAGE_Pseudo_PAO1: bacteriophage integrase; MDS_2611; phage(gi15595925) | 9e-115 | Click |
Region 4, total : 9 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 3509877..3509899 | attL CGGGAAGATAGGGATTTGAACCC | N/A | Click |
2 | 3518097..3518303 | PHAGE_Ralsto_RSS0: major coat protein; MDS_3182; phage(gi423262457) | 5e-05 | Click |
3 | 3518440..3519795 | PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; MDS_3183; phage(gi15595921) | 5e-37 | Click |
4 | 3519797..3520117 | PHAGE_Ralsto_RSS0: hypothetical protein; MDS_3184; phage(gi423262461) | 3e-06 | Click |
5 | 3520117..3521277 | PHAGE_Ralsto_RSS0: hypothetical protein; MDS_3185; phage(gi423262462) | 3e-26 | Click |
6 | 3521457..3522734 | PHAGE_Pseudo_Pf1: hypothetical protein Pf1p08; MDS_3186; phage(gi9625374) | 9e-129 | Click |
7 | 3522734..3523753 | PROPHAGE_Pseudo_PAO1: bacteriophage integrase; MDS_3187; phage(gi15595925) | 4e-106 | Click |
8 | 3523839..3524114 | hypothetical protein; MDS_3188 | N/A | Click |
9 | 3524114..3524398 | RelE/StbE family addiction module toxin; MDS_3189 | N/A | Click |
10 | complement(3524973..3525059) | tRNA | N/A | Click |
11 | 3524973..3524995 | attR CGGGAAGATAGGGATTTGAACCC | N/A | Click |
12 | complement(3525186..3526055) | PHAGE_Synech_S_MbCM6: phosphoribosylformylglycinamidine synthase; MDS_3190; phage(gi418487512) | 2e-08 | Click |
Region 5, total : 22 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 4097083..4097094 | attL AAACCCGCACCC | N/A | Click |
2 | complement(4097428..4098369) | PHAGE_Thermu_45: XerD-like integrase; MDS_3719; phage(gi157265299) | 2e-18 | Click |
3 | 4098553..4099233 | hypothetical protein; MDS_3720 | N/A | Click |
4 | complement(4099240..4099653) | thioesterase superfamily protein; MDS_3721 | N/A | Click |
5 | complement(4099735..4100085) | 50S ribosomal protein L19; MDS_3722 | N/A | Click |
6 | complement(4100128..4100871) | tRNA (guanine-N(1)-)-methyltransferase; MDS_3723 | N/A | Click |
7 | complement(4100877..4101413) | 16S rRNA-processing protein RimM; MDS_3724 | N/A | Click |
8 | complement(4101423..4101674) | 30S ribosomal protein S16; MDS_3725 | N/A | Click |
9 | complement(4101816..4103195) | signal recognition particle subunit FFH/SRP54 (SRP54); MDS_3726 | N/A | Click |
10 | 4103353..4104153 | cytochrome c assembly protein; MDS_3727 | N/A | Click |
11 | 4104164..4105450 | hypothetical protein; MDS_3729 | N/A | Click |
12 | complement(4105422..4106156) | lysophospholipase L1 and related esterase-like protein; MDS_3728 | N/A | Click |
13 | complement(4106153..4107334) | phosphoribosylglycinamide formyltransferase 2; MDS_3730 | N/A | Click |
14 | complement(4107357..4107557) | hypothetical protein; MDS_3731 | N/A | Click |
15 | complement(4107550..4108074) | PHAGE_Bathyc_BpV1: hypothetical protein; MDS_3732; phage(gi313768028) | 5e-07 | Click |
16 | complement(4108096..4108701) | NUDIX hydrolase; MDS_3733 | N/A | Click |
17 | 4108852..4109406 | PHAGE_Burkho_Bcep1: gp18; MDS_3734; phage(gi38638625) | 3e-06 | Click |
18 | 4109426..4109929 | hypothetical protein; MDS_3735 | N/A | Click |
19 | complement(4109975..4110292) | PHAGE_Acanth_moumouvirus: hypothetical protein; MDS_3736; phage(gi441432780) | 2e-15 | Click |
20 | complement(4110451..4110627) | hypothetical protein; MDS_3737 | N/A | Click |
21 | complement(4110984..4114880) | PHAGE_Macaci_4: BNRF1; MDS_3738; phage(gi51518016) | 4e-35 | Click |
22 | 4115112..4116512 | PHAGE_Yersin_Berlin: Internal virion protein D; MDS_3739; phage(gi119637782) | 4e-09 | Click |
23 | complement(4116517..4116972) | hypothetical protein; MDS_3740 | N/A | Click |
24 | complement(4117006..4117482) | PHAGE_phiJL001: deoxycytidylate deaminase; MDS_3741; phage(gi62327216) | 1e-07 | Click |
25 | 4128317..4128328 | attR AAACCCGCACCC | N/A | Click |