Definition Pseudomonas mendocina NK-01 chromosome, complete genome.
Accession NC_015410
Length 5,434,353
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1200096..1200452  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p32; MDS_1094; phage(gi109289967)  1e-06  Click
2 complement(1200449..1200613)  hypothetical protein; MDS_1093  N/A  Click
3 1200899..1200972  tRNA  N/A  Click
4 1200930..1200959  attL    ATTCATAATGCTGATGTCCCAGGTTCAAGT  N/A  Click
5 complement(1201499..1201927)  PHAGE_Synech_S_CAM1: glutaredoxin; MDS_1095; phage(gi472339503)  3e-05  Click
6 complement(1201998..1202306)  hypothetical protein; MDS_1096  N/A  Click
7 complement(1202370..1203362)  PHAGE_Erwini_ENT90: phage integrase family protein; MDS_1097; phage(gi431810942)  6e-76  Click
8 complement(1203359..1204546)  PHAGE_Pseudo_Pf1: hypothetical protein Pf1p08; MDS_1098; phage(gi9625374)  3e-126  Click
9 complement(1204707..1205936)  PHAGE_Vibrio_Vf33: Vpf380; MDS_1099; phage(gi49248527)  2e-09  Click
10 complement(1205940..1206269)  hypothetical protein; MDS_1100  N/A  Click
11 complement(1206279..1207691)  PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; MDS_1101; phage(gi15595921)  6e-58  Click
12 1214588..1214617  attR    ATTCATAATGCTGATGTCCCAGGTTCAAGT  N/A  Click
Region 2, total : 51 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2362392..2362420  attL    GAGTTCGAGTCTCTCCGTCCGCACCATCT  N/A  Click
2 complement(2364894..2366060)  PHAGE_Pseudo_phiCTX: integrase; MDS_2150; phage(gi17313264)  1e-158  Click
3 complement(2366229..2366423)  hypothetical protein; MDS_2151  N/A  Click
4 complement(2366416..2366682)  hypothetical protein; MDS_2152  N/A  Click
5 complement(2366679..2367917)  phosphoadenosine phosphosulfate reductase; MDS_2153  N/A  Click
6 complement(2367914..2368540)  PHAGE_Salmon_SSU5: hypothetical protein; MDS_2154; phage(gi410491510)  9e-20  Click
7 complement(2368537..2368755)  hypothetical protein; MDS_2155  N/A  Click
8 complement(2368745..2368999)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp43; MDS_2156; phage(gi17313260)  9e-19  Click
9 complement(2369059..2370018)  hypothetical protein; MDS_2157  N/A  Click
10 complement(2370075..2370389)  PHAGE_Pseudo_1: hypothetical protein 201phi2-1p308; MDS_2158; phage(gi189490460)  3e-18  Click
11 complement(2370386..2371210)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; MDS_2159; phage(gi17313257)  2e-25  Click
12 complement(2371411..2374260)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; MDS_2160; phage(gi17313257)  0.0  Click
13 complement(2374266..2374514)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp39; MDS_2161; phage(gi17313256)  8e-07  Click
14 complement(2374588..2374866)  hypothetical protein; MDS_2162  N/A  Click
15 complement(2374863..2375171)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp37; MDS_2163; phage(gi17313254)  5e-25  Click
16 complement(2375168..2375647)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp36; MDS_2164; phage(gi17313253)  2e-50  Click
17 complement(2375677..2375880)  PHAGE_Burkho_BcepMu: gp16; MDS_2165; phage(gi48696926)  9e-08  Click
18 2375940..2376296  PHAGE_Burkho_phiE202: gp21; MDS_2166; phage(gi134288765)  1e-21  Click
19 2376319..2376957  PHAGE_Vibrio_kappa: putative NAD-dependent DNA ligase; MDS_2167; phage(gi165970237)  5e-18  Click
20 2377025..2377306  PHAGE_Entero_PsP3: gp28; MDS_2168; phage(gi41057381)  8e-12  Click
21 2379030..2379518  hypothetical protein; MDS_2169  N/A  Click
22 2379540..2380166  hypothetical protein; MDS_2170  N/A  Click
23 2380281..2380712  PHAGE_Cronob_ENT39118: protein umuD; MDS_2171; phage(gi431811072)  8e-24  Click
24 2380712..2381971  PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; MDS_2172; phage(gi399528790)  5e-113  Click
25 2382052..2382237  hypothetical protein; MDS_2173  N/A  Click
26 complement(2382286..2382705)  hypothetical protein; MDS_2174  N/A  Click
27 complement(2383253..2384515)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp30; MDS_2175; phage(gi17313247)  4e-144  Click
28 complement(2384512..2384952)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp29; MDS_2176; phage(gi17313246)  4e-59  Click
29 complement(2384959..2387511)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp28; MDS_2177; phage(gi17313245)  1e-176  Click
30 complement(2387635..2387943)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp26; MDS_2178; phage(gi17313243)  1e-16  Click
31 complement(2388021..2388536)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp25; MDS_2179; phage(gi17313242)  2e-61  Click
32 complement(2388566..2389756)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp24; MDS_2180; phage(gi17313241)  8e-164  Click
33 complement(2389916..2390500)  PHAGE_Ralsto_phiRSA1: tail fiber assembly-like protein; MDS_2181; phage(gi145708099)  7e-19  Click
34 complement(2390511..2391812)  PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; MDS_2182; phage(gi145708097)  1e-74  Click
35 complement(2391800..2392423)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp21; MDS_2183; phage(gi17313238)  2e-60  Click
36 complement(2392420..2393325)  PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; MDS_2184; phage(gi17313237)  4e-107  Click
37 complement(2393322..2393666)  PHAGE_Pseudo_phiCTX: predicted baseplate; MDS_2185; phage(gi17313236)  1e-33  Click
38 complement(2393669..2393962)  PHAGE_Yersin_phiR1_37: hypothetical protein; MDS_2186; phage(gi358356625)  5e-24  Click
39 complement(2393971..2394375)  PHAGE_Pseudo_phiCTX: predicted baseplate; MDS_2187; phage(gi17313235)  1e-25  Click
40 complement(2394449..2394904)  PHAGE_Pseudo_phiCTX: predicted tail completion; MDS_2188; phage(gi17313233)  9e-41  Click
41 complement(2394897..2395424)  PHAGE_Pseudo_phiCTX: predicted tail completion; MDS_2189; phage(gi17313232)  9e-49  Click
42 complement(2395530..2395973)  PHAGE_Pseudo_phiCTX: predicted lysis; MDS_2190; phage(gi17313230)  3e-25  Click
43 complement(2395970..2396827)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp12; MDS_2191; phage(gi17313229)  3e-88  Click
44 complement(2396824..2397147)  PHAGE_Pseudo_F10: Putative Holin; MDS_2192; phage(gi148912825)  2e-18  Click
45 complement(2397131..2397616)  PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; MDS_2193; phage(gi418489075)  2e-11  Click
46 complement(2397607..2397816)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp09; MDS_2194; phage(gi17313226)  1e-16  Click
47 complement(2397816..2398277)  PHAGE_Pseudo_phiCTX: predicted capsid completion protein; MDS_2195; phage(gi17313224)  2e-35  Click
48 complement(2398382..2399089)  PHAGE_Pseudo_phiCTX: predicted terminase subunit; MDS_2196; phage(gi17313223)  6e-67  Click
49 complement(2399101..2400108)  PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; MDS_2197; phage(gi145708082)  1e-129  Click
50 complement(2400152..2401003)  PHAGE_Pseudo_phiCTX: presumed capsid scaffold; MDS_2198; phage(gi17313221)  6e-72  Click
51 2401147..2402904  PHAGE_Pseudo_phiCTX: predicted DNA-dependent ATPase terminase subunit; MDS_2199; phage(gi17313220)  0.0  Click
52 2402905..2403966  PHAGE_Pseudo_phiCTX: predicted capsid packaging protein; MDS_2200; phage(gi17313219)  1e-139  Click
53 2404702..2404730  attR    GAGTTCGAGTCTCTCCGTCCGCACCATCT  N/A  Click
Region 3, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2841354..2841366  attL    ATGGCCTGCGCCA  N/A  Click
2 2851682..2852158  PHAGE_Pseudo_Pf1: hypothetical protein Pf1p12; MDS_2601; phage(gi9625378)  1e-08  Click
3 2852155..2852466  hypothetical protein; MDS_2602  N/A  Click
4 2852828..2853199  hypothetical protein; MDS_2603  N/A  Click
5 2853215..2853394  hypothetical protein; MDS_2604  N/A  Click
6 2853416..2853607  hypothetical protein; MDS_2605  N/A  Click
7 2853619..2853825  PHAGE_Ralsto_RSS0: major coat protein; MDS_2606; phage(gi423262457)  5e-05  Click
8 2853962..2855332  PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; MDS_2607; phage(gi15595921)  2e-34  Click
9 2855334..2855654  PHAGE_Ralsto_RSS0: hypothetical protein; MDS_2608; phage(gi423262461)  3e-06  Click
10 2855654..2856814  PHAGE_Ralsto_RSS0: hypothetical protein; MDS_2609; phage(gi423262462)  7e-27  Click
11 2856995..2858272  PHAGE_Pseudo_Pf1: hypothetical protein Pf1p08; MDS_2610; phage(gi9625374)  3e-133  Click
12 2857902..2857914  attR    ATGGCCTGCGCCA  N/A  Click
13 2858272..2859261  PROPHAGE_Pseudo_PAO1: bacteriophage integrase; MDS_2611; phage(gi15595925)  9e-115  Click
Region 4, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3509877..3509899  attL    CGGGAAGATAGGGATTTGAACCC  N/A  Click
2 3518097..3518303  PHAGE_Ralsto_RSS0: major coat protein; MDS_3182; phage(gi423262457)  5e-05  Click
3 3518440..3519795  PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; MDS_3183; phage(gi15595921)  5e-37  Click
4 3519797..3520117  PHAGE_Ralsto_RSS0: hypothetical protein; MDS_3184; phage(gi423262461)  3e-06  Click
5 3520117..3521277  PHAGE_Ralsto_RSS0: hypothetical protein; MDS_3185; phage(gi423262462)  3e-26  Click
6 3521457..3522734  PHAGE_Pseudo_Pf1: hypothetical protein Pf1p08; MDS_3186; phage(gi9625374)  9e-129  Click
7 3522734..3523753  PROPHAGE_Pseudo_PAO1: bacteriophage integrase; MDS_3187; phage(gi15595925)  4e-106  Click
8 3523839..3524114  hypothetical protein; MDS_3188  N/A  Click
9 3524114..3524398  RelE/StbE family addiction module toxin; MDS_3189  N/A  Click
10 complement(3524973..3525059)  tRNA  N/A  Click
11 3524973..3524995  attR    CGGGAAGATAGGGATTTGAACCC  N/A  Click
12 complement(3525186..3526055)  PHAGE_Synech_S_MbCM6: phosphoribosylformylglycinamidine synthase; MDS_3190; phage(gi418487512)  2e-08  Click
Region 5, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4097083..4097094  attL    AAACCCGCACCC  N/A  Click
2 complement(4097428..4098369)  PHAGE_Thermu_45: XerD-like integrase; MDS_3719; phage(gi157265299)  2e-18  Click
3 4098553..4099233  hypothetical protein; MDS_3720  N/A  Click
4 complement(4099240..4099653)  thioesterase superfamily protein; MDS_3721  N/A  Click
5 complement(4099735..4100085)  50S ribosomal protein L19; MDS_3722  N/A  Click
6 complement(4100128..4100871)  tRNA (guanine-N(1)-)-methyltransferase; MDS_3723  N/A  Click
7 complement(4100877..4101413)  16S rRNA-processing protein RimM; MDS_3724  N/A  Click
8 complement(4101423..4101674)  30S ribosomal protein S16; MDS_3725  N/A  Click
9 complement(4101816..4103195)  signal recognition particle subunit FFH/SRP54 (SRP54); MDS_3726  N/A  Click
10 4103353..4104153  cytochrome c assembly protein; MDS_3727  N/A  Click
11 4104164..4105450  hypothetical protein; MDS_3729  N/A  Click
12 complement(4105422..4106156)  lysophospholipase L1 and related esterase-like protein; MDS_3728  N/A  Click
13 complement(4106153..4107334)  phosphoribosylglycinamide formyltransferase 2; MDS_3730  N/A  Click
14 complement(4107357..4107557)  hypothetical protein; MDS_3731  N/A  Click
15 complement(4107550..4108074)  PHAGE_Bathyc_BpV1: hypothetical protein; MDS_3732; phage(gi313768028)  5e-07  Click
16 complement(4108096..4108701)  NUDIX hydrolase; MDS_3733  N/A  Click
17 4108852..4109406  PHAGE_Burkho_Bcep1: gp18; MDS_3734; phage(gi38638625)  3e-06  Click
18 4109426..4109929  hypothetical protein; MDS_3735  N/A  Click
19 complement(4109975..4110292)  PHAGE_Acanth_moumouvirus: hypothetical protein; MDS_3736; phage(gi441432780)  2e-15  Click
20 complement(4110451..4110627)  hypothetical protein; MDS_3737  N/A  Click
21 complement(4110984..4114880)  PHAGE_Macaci_4: BNRF1; MDS_3738; phage(gi51518016)  4e-35  Click
22 4115112..4116512  PHAGE_Yersin_Berlin: Internal virion protein D; MDS_3739; phage(gi119637782)  4e-09  Click
23 complement(4116517..4116972)  hypothetical protein; MDS_3740  N/A  Click
24 complement(4117006..4117482)  PHAGE_phiJL001: deoxycytidylate deaminase; MDS_3741; phage(gi62327216)  1e-07  Click
25 4128317..4128328  attR    AAACCCGCACCC  N/A  Click