Definition Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, complete genome.
Accession NC_015379
Length 6,843,248
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(956893..957534)  PHAGE_Geobac_GBSV1: YqaJ; PSEBR_a741; phage(gi115334611)  6e-17  Click
2 complement(957674..957892)  PHAGE_Bacill_SPP1: hypothetical protein SPP1p071; PSEBR_cmegl13; phage(gi22855116)  3e-08  Click
3 complement(957974..958942)  PHAGE_Mycoba_Nigel: gp88; PSEBR_a742; phage(gi194100601)  8e-13  Click
4 958843..958858  attL    GCTGCCAGACTTTCAG  N/A  Click
5 complement(959020..959349)  PHAGE_Bacill_BPS13: putative tail lysin 2; PSEBR_m268; phage(gi410492620)  8e-07  Click
6 complement(960029..960925)  PHAGE_Burkho_phi1026b: gp58; PSEBR_a743; phage(gi38707948)  1e-05  Click
7 961326..962195  Putative glutamin-(asparagin-)ase; PSEBR_a744  N/A  Click
8 complement(962374..963909)  PHAGE_Stx2_c_1717: transposase; PSEBR_a745; phage(gi209447153)  4e-87  Click
9 complement(963971..964306)  PHAGE_Stx2_c_1717: transposase; PSEBR_c2g20; phage(gi209447152)  2e-07  Click
10 complement(964303..964644)  PHAGE_Stx2_c_1717: truncated transposase; PSEBR_m273; phage(gi209447151)  5e-05  Click
11 964732..966930  hypothetical protein; PSEBR_a746  N/A  Click
12 966927..968801  Hypothetical protein; PSEBR_a747  N/A  Click
13 complement(968883..970139)  PHAGE_Entero_P4: integrase; PSEBR_a748; phage(gi9627511)  2e-60  Click
14 978048..978063  attR    GCTGCCAGACTTTCAG  N/A  Click
Region 2, total : 24 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1387013..1387597  PHAGE_Entero_SfV: hypothetical protein SfVp09; PSEBR_a1103; phage(gi19548999)  9e-19  Click
2 1387594..1387776  PHAGE_Entero_SfV: hypothetical protein SfVp10; PSEBR_a1104; phage(gi19549000)  4e-08  Click
3 1387776..1389272  PHAGE_Entero_SfV: tail sheath protein; PSEBR_a1105; phage(gi19549001)  4e-147  Click
4 1389339..1389686  PHAGE_Entero_SfV: hypothetical protein SfVp12; putative; phage tail tube protein; PSEBR_a1106(gi19549002)  8e-17  Click
5 1389695..1389979  PHAGE_Entero_SfV: hypothetical protein SfVp13; PSEBR_a1107; phage(gi19549003)  2e-12  Click
6 1390110..1391684  PHAGE_Entero_SfV: tail protein; putative; phage phage tail tape measure protein; PSEBR_a1108(gi19549004)  1e-19  Click
7 1391671..1392909  PHAGE_Entero_SfV: tail/DNA circulation protein; PSEBR_a1109; phage(gi19549005)  2e-39  Click
8 1392913..1393953  PHAGE_Entero_SfV: tail protein; PSEBR_a1110; phage(gi19549006)  4e-59  Click
9 1394353..1394862  PHAGE_Entero_SfV: tail protein; putative; phage prophage MuSo2, baseplate assembly protein V; PSEBR_a1111(gi19549007)  7e-21  Click
10 1394859..1395260  PHAGE_Entero_SfV: tail protein; Putative; phage Phage FluMu protein gp46; PSEBR_a1112(gi19549008)  9e-24  Click
11 1395250..1396290  PHAGE_Entero_SfV: tail protein; putative; phage baseplate J-like protein; PSEBR_a1113(gi19549009)  8e-59  Click
12 1396278..1396877  PHAGE_Entero_SfV: tail protein; PSEBR_a1114; phage(gi19548988)  5e-12  Click
13 1396889..1398043  Putative bacteriophage tail fiber protein; PSEBR_a1115  N/A  Click
14 1398040..1398549  PHAGE_Ralsto_phiRSA1: tail fiber assembly-like protein; PSEBR_a1116; phage(gi145708099)  2e-25  Click
15 1398577..1399671  PHAGE_Burkho_KS14: gp18; PSEBR_a1117; phage(gi327198287)  1e-21  Click
16 1399850..1400239  PHAGE_Entero_HK630: tail fiber assembly protein; putative; phage phage related protein, putative Tail fiber assembly protein; PSEBR_a1118(gi428782810)  5e-12  Click
17 1400351..1401262  PHAGE_Burkho_phiE255: gp26; PSEBR_m384; phage(gi134288791)  1e-14  Click
18 1401276..1401707  PHAGE_Entero_SfV: tail fibre assembly protein; Putative; phage tail fiber assembly protein; PSEBR_a1119(gi19549010)  1e-06  Click
19 1401732..1402295  PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; putative; phage bacteriophage lysozyme; PSEBR_a1120(gi414086784)  1e-42  Click
20 1402277..1402813  PHAGE_Burkho_DC1: Rz; putative; phage exported protein; PSEBR_a1121(gi401723083)  6e-09  Click
21 1402885..1403385  Putative phage related protein; putative CinA; PSEBR_a1122  N/A  Click
22 1403469..1404521  PROPHAGE_Escher_MG1655: DNA strand exchange and recombination protein with protease and nuclease activity; PSEBR_a1123; phage(gi16130606)  2e-138  Click
23 1404530..1404997  recombination regulator RecX; PSEBR_a1124  N/A  Click
24 complement(1405043..1406161)  PHAGE_Synech_S_CBS2: DprA superfamily protein; putative; phage decarboxylase; PSEBR_a1125(gi331027974)  5e-17  Click
Region 3, total : 71 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(4666642..4667406)  PHAGE_Entero_HK633: minor tail protein; PSEBR_a3804; phage(gi428782537)  3e-65  Click
2 complement(4667409..4668158)  PHAGE_Escher_HK75: minor tail protein L; PSEBR_a3805; phage(gi356870693)  2e-66  Click
3 complement(4668168..4668506)  PHAGE_Entero_mEpX2: minor tail protein; PSEBR_a3806; phage(gi428765629)  3e-29  Click
4 complement(4668506..4671553)  PHAGE_Pseudo_MP29: putative tail component protein; PSEBR_a3807; phage(gi215480016)  2e-156  Click
5 complement(4671581..4671853)  PHAGE_Cronob_phiES15: hypothetical protein; PSEBR_a3808; phage(gi401817604)  2e-13  Click
6 4671885..4671896  attL    GCCCGGGCGGCG  N/A  Click
7 complement(4671901..4672284)  PHAGE_Cronob_phiES15: hypothetical protein; PSEBR_a3809; phage(gi401817603)  5e-06  Click
8 complement(4672294..4672941)  PHAGE_Cronob_phiES15: putative major tail protein; PSEBR_a3810; phage(gi401817602)  1e-27  Click
9 complement(4673027..4673287)  Hypothetical protein; PSEBR_m1193  N/A  Click
10 complement(4673339..4673755)  PHAGE_Cronob_phiES15: hypothetical protein; PSEBR_a3811; phage(gi401817601)  1e-10  Click
11 complement(4673752..4674348)  PHAGE_Shigel_EP23: putative tail protein; putative; phage exported protein; PSEBR_a3812(gi371496282)  4e-19  Click
12 complement(4674350..4674739)  PHAGE_Acinet_Bphi_B1251: hypothetical protein; PSEBR_a3813; phage(gi423262010)  3e-19  Click
13 complement(4674742..4675119)  PHAGE_Acinet_Bphi_B1251: hypothetical protein; PSEBR_a3814; phage(gi423262009)  4e-07  Click
14 complement(4675130..4675567)  hypothetical protein; PSEBR_a3815  N/A  Click
15 complement(4675619..4676596)  PHAGE_Salmon_vB_SenS_Ent1: putative major coat protein; PSEBR_a3816; phage(gi423261856)  2e-62  Click
16 complement(4676600..4677337)  PHAGE_Xantho_Xp15: putative phage structural protein; PSEBR_a3817; phage(gi66392059)  2e-18  Click
17 complement(4677637..4677870)  Hypothetical protein; PSEBR_m1194  N/A  Click
18 complement(4677954..4678445)  PHAGE_Pseudo_vB_Pae_Kakheti25: virion protein; PSEBR_cmegm95; phage(gi388542673)  2e-07  Click
19 complement(4678454..4679500)  PHAGE_Salmon_vB_SenS_Ent1: putative head morphogenesis protein, SPP1 gp7 family; PSEBR_a3818; phage(gi423261851)  3e-58  Click
20 complement(4679484..4680734)  PHAGE_Salmon_vB_SenS_Ent1: putative portal protein; PSEBR_a3819; phage(gi423261849)  2e-18  Click
21 complement(4680710..4680931)  hypothetical protein; PSEBR_m1195  N/A  Click
22 complement(4680931..4682250)  PHAGE_Salmon_SSU5: putative terminase large subunit; PSEBR_a3820; phage(gi410491412)  2e-55  Click
23 complement(4682225..4682698)  PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; PSEBR_a3821; phage(gi399528759)  2e-46  Click
24 complement(4682730..4683353)  PHAGE_Pectob_ZF40: putative transposase; PSEBR_a3822; phage(gi422936679)  6e-78  Click
25 complement(4683413..4683625)  hypothetical protein; PSEBR_a3823  N/A  Click
26 4683920..4684183  hypothetical protein; PSEBR_m1196  N/A  Click
27 complement(4684221..4684475)  hypothetical protein; PSEBR_c2g78  N/A  Click
28 complement(4684472..4684663)  hypothetical protein; PSEBR_c2g79  N/A  Click
29 complement(4684663..4684893)  PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; PSEBR_a3824; phage(gi414087356)  7e-16  Click
30 complement(4684953..4685270)  PHAGE_Erwini_PEp14: hypothetical protein; PSEBR_a3825; phage(gi374531878)  3e-05  Click
31 complement(4685270..4685641)  PHAGE_Erwini_PEp14: holin; PSEBR_cmegm96; phage(gi374531877)  3e-07  Click
32 complement(4686169..4686513)  Hypothetical protein; PSEBR_m1199  N/A  Click
33 complement(4686572..4687117)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp058; PSEBR_a3826; phage(gi148912823)  1e-34  Click
34 complement(4687114..4687317)  Hypothetical protein; PSEBR_a3827  N/A  Click
35 complement(4687377..4687958)  PHAGE_Pseudo_PAJU2: putative NinG; PSEBR_a3828; phage(gi209552490)  1e-60  Click
36 complement(4687955..4688425)  hypothetical protein; PSEBR_a3829  N/A  Click
37 complement(4688422..4688658)  Hypothetical protein; PSEBR_a3830  N/A  Click
38 complement(4688655..4689452)  PHAGE_Pseudo_F116: hypothetical protein F116p33; putative; phage exported protein; PSEBR_a3831(gi56692949)  1e-44  Click
39 complement(4689439..4690353)  PHAGE_Entero_mEp460: replication protein; PSEBR_a3832; phage(gi428782359)  7e-48  Click
40 complement(4690355..4691206)  PHAGE_Pseudo_F10: Conserved hypothetical protein; putative antirepressor; PSEBR_a3833; phage(gi148912801)  4e-33  Click
41 complement(4691364..4691786)  hypothetical protein; PSEBR_a3834  N/A  Click
42 complement(4691868..4692080)  PHAGE_Pseudo_phi297: hypothetical protein; PSEBR_cmegm97; phage(gi374531273)  3e-20  Click
43 4692133..4692831  PHAGE_Entero_HK446: prophage repressor; PSEBR_a3835; phage(gi428782233)  8e-45  Click
44 4693028..4693609  PHAGE_Salmon_S16: immunity to superinfection membrane protein; putative; phage membrane protein; PSEBR_cmegm98(gi456351127)  5e-09  Click
45 4693748..4693999  PHAGE_Pseudo_F116: hypothetical protein F116p28; PSEBR_cmegm99; phage(gi56692946)  6e-07  Click
46 4694405..4694614  Hypothetical protein; PSEBR_a3836  N/A  Click
47 4694627..4694941  Hypothetical protein; PSEBR_cmegm100  N/A  Click
48 4695200..4695457  Hypothetical protein; PSEBR_m1204  N/A  Click
49 4695454..4695768  hypothetical protein; PSEBR_a3837  N/A  Click
50 4695802..4696047  Hypothetical protein; PSEBR_c2g80  N/A  Click
51 4696044..4696265  Hypothetical protein; PSEBR_cmegm101  N/A  Click
52 4696262..4696453  hypothetical protein; PSEBR_a3838  N/A  Click
53 4696450..4696659  hypothetical protein; PSEBR_a3839  N/A  Click
54 4696980..4698065  PHAGE_Xantho_CP2: hypothetical protein; PSEBR_a3840; phage(gi448245209)  2e-21  Click
55 4698120..4699088  PHAGE_Entero_phiV10: putative recET; PSEBR_a3841; phage(gi89152454)  5e-56  Click
56 4699085..4699753  PHAGE_Stx2_c_II: exonuclease; PSEBR_a3842; phage(gi302393128)  1e-21  Click
57 4699907..4700347  Hypothetical protein; PSEBR_a3843  N/A  Click
58 4700417..4700728  hypothetical protein; PSEBR_a3844  N/A  Click
59 complement(4700716..4701426)  Hypothetical protein, putative membrane protein; PSEBR_a3845  N/A  Click
60 4701533..4701694  Hypothetical protein; PSEBR_cmegl71  N/A  Click
61 4701770..4702480  Hypothetical protein; PSEBR_m1207  N/A  Click
62 4702576..4702791  Hypothetical protein; PSEBR_m1208  N/A  Click
63 complement(4703034..4703222)  Hypothetical protein; PSEBR_cmegm102  N/A  Click
64 complement(4703522..4704988)  hypothetical protein; PSEBR_a3846  N/A  Click
65 4705067..4705489  Hypothetical protein; PSEBR_a3847  N/A  Click
66 4705486..4705665  hypothetical protein; PSEBR_c2g81  N/A  Click
67 4705711..4706274  Hypothetical protein; PSEBR_a3848  N/A  Click
68 4706332..4706577  hypothetical protein; PSEBR_cmegm103  N/A  Click
69 4706574..4707299  PHAGE_Salmon_SPN3UB: hypothetical protein; PSEBR_a3849; phage(gi423262431)  4e-47  Click
70 4707348..4707554  hypothetical protein; PSEBR_a3850  N/A  Click
71 4707591..4707824  Hypothetical protein; PSEBR_cmegm104  N/A  Click
72 4707965..4707976  attR    GCCCGGGCGGCG  N/A  Click
73 4707980..4708960  PHAGE_Entero_mEp235: integrase; PSEBR_a3851; phage(gi428781836)  1e-16  Click