| Definition | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, complete genome. |
|---|---|
| Accession | NC_015224 |
| Length | 4,552,107 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 16 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1411309..1411335 | attL AGAAGAGTAAAGCGTCCGCGCCAGGGA | N/A | Click |
| 2 | complement(1418913..1421669) | PHAGE_Parame_AR158: hypothetical protein AR158_C785L; YE105_C1190; phage(gi157953975) | 6e-31 | Click |
| 3 | 1421866..1422285 | putative regulatory protein; YE105_C1191 | N/A | Click |
| 4 | complement(1422331..1422780) | hypothetical protein; YE105_C1192 | N/A | Click |
| 5 | complement(1422783..1423697) | PHAGE_Acanth_mimivirus: putative band 7 family protein; YE105_C1193; phage(gi311978011) | 8e-25 | Click |
| 6 | complement(1423894..1424763) | PHAGE_Salmon_7_11: thiol-disulphide isomerase and thioredoxin; YE105_C1194; phage(gi345461186) | 1e-05 | Click |
| 7 | complement(1424960..1425736) | PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; YE105_C1195; phage(gi116326757) | 8e-06 | Click |
| 8 | complement(1425782..1426354) | multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; YE105_C1196 | N/A | Click |
| 9 | 1426388..1427074 | PHAGE_Plankt_PaV_LD: ABC transporter; YE105_C1197; phage(gi371496158) | 8e-34 | Click |
| 10 | 1427071..1429497 | PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; YE105_C1198; phage(gi163932195) | 2e-05 | Click |
| 11 | complement(1429637..1430701) | phosphoribosylaminoimidazole carboxylase ATPase subunit; YE105_C1199 | N/A | Click |
| 12 | complement(1430698..1431222) | phosphoribosylaminoimidazole carboxylase catalytic subunit PurE; YE105_C1200 | N/A | Click |
| 13 | complement(1431398..1432120) | UDP-2,3-diacylglucosamine hydrolase; YE105_C1201 | N/A | Click |
| 14 | complement(1432131..1432625) | peptidyl-prolyl cis-trans isomerase B; YE105_C1202 | N/A | Click |
| 15 | 1432838..1434223 | PHAGE_Acanth_mimivirus: cysteinyl-tRNA synthetase; YE105_C1203; phage(gi311977536) | 1e-40 | Click |
| 16 | complement(1434392..1434604) | hypothetical protein; YE105_C1204 | N/A | Click |
| 17 | complement(1434619..1435485) | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; YE105_C1205 | N/A | Click |
| 18 | 1435699..1435775 | tRNA | N/A | Click |
| 19 | complement(1435808..1436635) | PHAGE_Bacter_2: integrase; YE105_C1206; phage(gi212499734) | 3e-100 | Click |
| 20 | 1441385..1441411 | attR AGAAGAGTAAAGCGTCCGCGCCAGGGA | N/A | Click |
Region 2, total : 33 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1569397..1569410 | attL GCGATTTCATCAGC | N/A | Click |
| 2 | complement(1580705..1582198) | PHAGE_Amsact_: putative ATP-binding cassette transporter; YE105_C1325; phage(gi9964444) | 3e-11 | Click |
| 3 | complement(1582307..1583098) | DNA-binding transcriptional regulator ModE; YE105_C1326 | N/A | Click |
| 4 | 1583333..1583473 | hypothetical protein; YE105_C1327 | N/A | Click |
| 5 | 1583690..1584466 | molybdate transporter periplasmic protein; YE105_C1328 | N/A | Click |
| 6 | 1584642..1585835 | PROPHAGE_Escher_CFT073: putative prophage integrase; YE105_C1329; phage(gi26250313) | 5e-78 | Click |
| 7 | complement(1585801..1586001) | Phage transcriptional regulator, AlpA; YE105_C1330 | N/A | Click |
| 8 | complement(1585998..1587296) | PHAGE_Bacter_2: DEAD box helicase; YE105_C1331; phage(gi212499736) | 0.0 | Click |
| 9 | 1587442..1587936 | hypothetical protein; YE105_C1332 | N/A | Click |
| 10 | complement(1587938..1588210) | PHAGE_Bacter_2: hypothetical protein APSE235; YE105_C1333; phage(gi212499740) | 7e-32 | Click |
| 11 | complement(1588200..1588424) | PHAGE_Aeromo_vB_AsaM_56: hypothetical protein; YE105_C1334; phage(gi422937526) | 9e-05 | Click |
| 12 | complement(1588429..1590438) | PHAGE_Bordet_1: Bbp42; YE105_C1335; phage(gi41179402) | 0.0 | Click |
| 13 | complement(1590625..1591404) | PHAGE_Burkho_BcepMigl: DUF2303 protein; YE105_C1336; phage(gi431809868) | 2e-36 | Click |
| 14 | complement(1591461..1591838) | PHAGE_Burkho_BcepIL02: hypothetical protein BcepIL02_gp10; YE105_C1337; phage(gi238801626) | 1e-13 | Click |
| 15 | complement(1591894..1592442) | PHAGE_Bacter_2: hypothetical protein APSE240; YE105_C1338; phage(gi212499744) | 3e-57 | Click |
| 16 | complement(1592455..1593765) | PHAGE_Bacter_2: hypothetical protein APSE241; YE105_C1339; phage(gi212499745) | 7e-129 | Click |
| 17 | complement(1593768..1594502) | PHAGE_Bacter_2: hypothetical protein APSE242; YE105_C1340; phage(gi212499746) | 3e-16 | Click |
| 18 | complement(1595014..1595691) | PHAGE_Bacter_2: cI; YE105_C1341; phage(gi212499706) | 2e-54 | Click |
| 19 | 1595832..1596032 | PHAGE_Bacter_2: cro; YE105_C1342; phage(gi212499707) | 1e-11 | Click |
| 20 | 1596036..1598201 | PHAGE_Bacter_2: predicted P-loop ATPase; YE105_C1343; phage(gi212499708) | 4e-162 | Click |
| 21 | 1598532..1598768 | hypothetical protein; YE105_C1344 | N/A | Click |
| 22 | 1599041..1599454 | hypothetical protein; YE105_C1345 | N/A | Click |
| 23 | 1599465..1599683 | hypothetical protein; YE105_C1346 | N/A | Click |
| 24 | 1599686..1601290 | PHAGE_Pelagi_HTVC010P: head-tail connector protein; YE105_C1347; phage(gi460042262) | 4e-71 | Click |
| 25 | 1601287..1601526 | hypothetical protein; YE105_C1348 | N/A | Click |
| 26 | 1601513..1602316 | PHAGE_Pelagi_HTVC010P: hypothetical protein; YE105_C1349; phage(gi460042264) | 2e-08 | Click |
| 27 | 1602530..1603438 | PHAGE_Pelagi_HTVC010P: putative major capsid protein; YE105_C1350; phage(gi460042266) | 2e-23 | Click |
| 28 | 1603493..1604053 | PHAGE_Vibrio_VP5: major tail subunit; YE105_C1351; phage(gi48696686) | 8e-14 | Click |
| 29 | 1604053..1606026 | PHAGE_Bordet_1: Bbp13; YE105_C1352; phage(gi41179374) | 9e-79 | Click |
| 30 | 1606032..1606478 | PHAGE_Entero_K1E: hypothetical acetyltransferase; YE105_C1353; phage(gi83571752) | 1e-14 | Click |
| 31 | 1606482..1606964 | PHAGE_Salmon_SPN1S: hypothetical protein; YE105_C1354; phage(gi374531207) | 3e-09 | Click |
| 32 | 1606961..1609087 | PHAGE_Entero_phiV10: hypothetical structural protein; YE105_C1355; phage(gi89152439) | 3e-12 | Click |
| 33 | 1609093..1610385 | PHAGE_Entero_phiV10: hypothetical protein PhiV10p19; YE105_C1356; phage(gi89152440) | 6e-37 | Click |
| 34 | 1610382..1612907 | PHAGE_Entero_phiV10: hypothetical protein PhiV10p20; YE105_C1357; phage(gi89152441) | 0.0 | Click |
| 35 | 1624380..1624393 | attR GCGATTTCATCAGC | N/A | Click |
Region 3, total : 44 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2080617..2081639) | PHAGE_Salmon_RE_2010: gene D protein; YE105_C1776; phage(gi418489726) | 5e-124 | Click |
| 2 | complement(2084319..2084438) | PHAGE_Salmon_RE_2010: tail protein E'; YE105_C1777; phage(gi418489723) | 3e-09 | Click |
| 3 | complement(2084453..2084803) | PHAGE_Salmon_RE_2010: tail protein E; YE105_C1778; phage(gi418489722) | 5e-21 | Click |
| 4 | complement(2084877..2085392) | PHAGE_Salmon_RE_2010: major tail tube protein; YE105_C1779; phage(gi418489721) | 3e-60 | Click |
| 5 | complement(2085404..2086579) | PHAGE_Salmon_RE_2010: major tail sheath protein; YE105_C1780; phage(gi418489720) | 1e-178 | Click |
| 6 | complement(2086889..2087074) | hypothetical protein; YE105_C1781 | N/A | Click |
| 7 | complement(2087638..2088561) | PROPHAGE_Escher_MG1655: predicted transposase; YE105_C1782; phage(gi16131287) | 3e-92 | Click |
| 8 | complement(2088728..2088904) | PHAGE_Sodali_phiSG1: transposase; YE105_C1783; phage(gi89886005) | 7e-05 | Click |
| 9 | complement(2089346..2089666) | hypothetical protein; YE105_C1784 | N/A | Click |
| 10 | complement(2089656..2089862) | hypothetical protein; YE105_C1785 | N/A | Click |
| 11 | 2090004..2090171 | hypothetical protein; YE105_C1786 | N/A | Click |
| 12 | 2090243..2090503 | DinJ-like protein; YE105_C1787 | N/A | Click |
| 13 | 2090510..2090788 | hypothetical protein; YE105_C1788 | N/A | Click |
| 14 | complement(2091453..2092745) | PROPHAGE_Salmon_Ty2: variable tail fiber protein; YE105_C1789; phage(gi29143754) | 2e-63 | Click |
| 15 | complement(2092718..2092999) | PHAGE_Salmon_RE_2010: tail fiber protein; YE105_C1790; phage(gi418489713) | 2e-32 | Click |
| 16 | complement(2092992..2093537) | PROPHAGE_Salmon_Ty2: putative phage tail protein; YE105_C1791; phage(gi29143753) | 2e-66 | Click |
| 17 | complement(2093530..2094438) | PHAGE_Salmon_RE_2010: baseplate assembly protein J; YE105_C1792; phage(gi418489711) | 8e-113 | Click |
| 18 | complement(2094438..2094794) | PHAGE_Erwini_ENT90: baseplate assembly protein; YE105_C1793; phage(gi431810974) | 4e-35 | Click |
| 19 | complement(2094791..2095426) | PHAGE_Salmon_RE_2010: baseplate assembly protein V; YE105_C1794; phage(gi418489709) | 2e-43 | Click |
| 20 | 2095563..2095835 | PHAGE_Burkho_phiE202: gp6, pANL56; YE105_C1795; phage(gi134288760) | 2e-12 | Click |
| 21 | 2095816..2096106 | PHAGE_Burkho_phiE202: gp7, pANL12; YE105_C1796; phage(gi134288781) | 1e-07 | Click |
| 22 | 2096172..2097233 | hypothetical protein; YE105_C1797 | N/A | Click |
| 23 | complement(2097272..2097718) | PHAGE_Salmon_RE_2010: tail completion protein; YE105_C1798; phage(gi418489707) | 9e-35 | Click |
| 24 | complement(2097715..2098182) | PHAGE_Erwini_ENT90: phage tail completion protein; YE105_C1799; phage(gi431810962) | 3e-42 | Click |
| 25 | complement(2098284..2098709) | PHAGE_Salmon_RE_2010: lysozyme subunit B; YE105_C1800; phage(gi418489705) | 9e-26 | Click |
| 26 | complement(2098713..2099108) | PHAGE_Pectob_phiTE: endolysin; YE105_C1801; phage(gi448244889) | 2e-46 | Click |
| 27 | complement(2099095..2099274) | Phage holin; YE105_C1802 | N/A | Click |
| 28 | complement(2099259..2099465) | PHAGE_Salmon_RE_2010: major capsid protein; YE105_C1803; phage(gi418489699) | 2e-15 | Click |
| 29 | complement(2099620..2099844) | PROPHAGE_Xantho_33913: ISxcC1 transposase; YE105_C1804; phage(gi21231060) | 3e-21 | Click |
| 30 | complement(2100084..2100227) | PROPHAGE_Salmon_LT2: transposase; YE105_C1805; phage(gi16766077) | 2e-14 | Click |
| 31 | complement(2100497..2101087) | MFS family transporter; YE105_C1806 | N/A | Click |
| 32 | complement(2101256..2102458) | PROPHAGE_Shewan_MR-1: ISSod4, transposase; YE105_C1807; phage(gi24373869) | 0.0 | Click |
| 33 | complement(2102505..2102954) | MFS family transporter; YE105_C1808 | N/A | Click |
| 34 | 2103114..2104031 | LysR-family transcriptional regulator; YE105_C1809 | N/A | Click |
| 35 | complement(2104633..2105052) | PHAGE_Entero_mEp237: hypothetical protein; YE105_C1810; phage(gi435439303) | 5e-18 | Click |
| 36 | 2105453..2106097 | transferase hexapeptide repeat containing protein; YE105_C1811 | N/A | Click |
| 37 | 2106240..2106422 | phage-like protein; YE105_C1812 | N/A | Click |
| 38 | 2106842..2107261 | PHAGE_Entero_mEp390: late gene regulator Q; YE105_C1813; phage(gi428782710) | 1e-41 | Click |
| 39 | complement(2107438..2107614) | hypothetical protein; YE105_C1814 | N/A | Click |
| 40 | 2107841..2108017 | PHAGE_Salmon_vB_SosS_Oslo: class II holin; YE105_C1815; phage(gi399528833) | 9e-13 | Click |
| 41 | 2108046..2108501 | PHAGE_Salmon_SE1: Gp19; YE105_C1816; phage(gi219681236) | 1e-44 | Click |
| 42 | 2108874..2109758 | lipase; YE105_C1817 | N/A | Click |
| 43 | 2110060..2110716 | putative inner membrane protein; YE105_C1818 | N/A | Click |
| 44 | complement(2110823..2111707) | PHAGE_Burkho_phi1026b: gp58; YE105_C1819; phage(gi38707948) | 6e-16 | Click |
Region 4, total : 30 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2476620..2477336) | PHAGE_Sodali_phiSG1: hypothetical protein SGPHI_0043; YE105_C2149; phage(gi89886024) | 3e-17 | Click |
| 2 | complement(2477823..2478056) | hypothetical protein; YE105_C2150 | N/A | Click |
| 3 | complement(2478174..2478482) | hypothetical protein; YE105_C2151 | N/A | Click |
| 4 | complement(2478827..2479723) | PHAGE_Entero_2: gene IV product; YE105_C2152; phage(gi9625382) | 3e-112 | Click |
| 5 | complement(2479731..2480825) | PHAGE_Entero_2: gene I product; YE105_C2153; phage(gi9625390) | 3e-136 | Click |
| 6 | complement(2480826..2481167) | PHAGE_Entero_Ike: G VI capsid protein; YE105_C2154; phage(gi9626240) | 2e-27 | Click |
| 7 | complement(2481167..2482459) | PHAGE_Entero_2: gene III product; YE105_C2155; phage(gi9625389) | 2e-132 | Click |
| 8 | complement(2482506..2482748) | PHAGE_Entero_2: gene VIII product; YE105_C2156; phage(gi9625388) | 3e-15 | Click |
| 9 | complement(2482952..2483269) | PHAGE_Entero_2: gene V product; YE105_C2157; phage(gi9625385) | 1e-19 | Click |
| 10 | complement(2483281..2484333) | PHAGE_Entero_2: gene II product; YE105_C2158; phage(gi9625383) | 4e-114 | Click |
| 11 | 2484503..2484685 | hypothetical protein; YE105_C2159 | N/A | Click |
| 12 | 2484774..2485196 | hypothetical protein; YE105_C2160 | N/A | Click |
| 13 | 2485381..2485500 | hypothetical protein; YE105_C2161 | N/A | Click |
| 14 | 2485500..2485979 | hypothetical protein; YE105_C2162 | N/A | Click |
| 15 | complement(2486115..2486348) | hypothetical protein; YE105_C2163 | N/A | Click |
| 16 | complement(2486466..2486774) | hypothetical protein; YE105_C2164 | N/A | Click |
| 17 | complement(2487119..2488015) | PHAGE_Entero_2: gene IV product; YE105_C2165; phage(gi9625382) | 3e-112 | Click |
| 18 | complement(2488023..2489117) | PHAGE_Entero_2: gene I product; YE105_C2166; phage(gi9625390) | 3e-136 | Click |
| 19 | complement(2489118..2489459) | PHAGE_Entero_Ike: G VI capsid protein; YE105_C2167; phage(gi9626240) | 2e-27 | Click |
| 20 | complement(2489459..2490751) | PHAGE_Entero_2: gene III product; YE105_C2168; phage(gi9625389) | 2e-132 | Click |
| 21 | complement(2490798..2491040) | PHAGE_Entero_2: gene VIII product; YE105_C2169; phage(gi9625388) | 3e-15 | Click |
| 22 | complement(2491244..2491561) | PHAGE_Entero_2: gene V product; YE105_C2170; phage(gi9625385) | 1e-19 | Click |
| 23 | complement(2491573..2492625) | PHAGE_Entero_2: gene II product; YE105_C2171; phage(gi9625383) | 4e-114 | Click |
| 24 | 2492795..2492977 | hypothetical protein; YE105_C2172 | N/A | Click |
| 25 | 2493066..2493488 | hypothetical protein; YE105_C2173 | N/A | Click |
| 26 | 2493673..2493792 | hypothetical protein; YE105_C2174 | N/A | Click |
| 27 | 2493792..2494271 | hypothetical protein; YE105_C2175 | N/A | Click |
| 28 | 2494574..2494852 | hypothetical protein; YE105_C2176 | N/A | Click |
| 29 | 2495082..2495330 | putative membrane transport protein; YE105_C2177 | N/A | Click |
| 30 | 2495593..2496342 | PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; YE105_C2178; phage(gi116326757) | 8e-06 | Click |
Region 5, total : 11 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2720603..2720614 | attL ATAAAAACAAAA | N/A | Click |
| 2 | complement(2720789..2721991) | PROPHAGE_Shewan_MR-1: ISSod4, transposase; YE105_C2365; phage(gi24373869) | 0.0 | Click |
| 3 | 2722097..2722108 | attL CTATGATGCATT | N/A | Click |
| 4 | complement(2722194..2722895) | PHAGE_Sodali_phiSG1: hypothetical protein SGPHI_0043; YE105_C2366; phage(gi89886024) | 1e-17 | Click |
| 5 | complement(2722949..2724262) | putative purine and pyrimidine permease; YE105_C2367 | N/A | Click |
| 6 | 2724466..2725119 | PHAGE_Vibrio_VP882: transcriptional regulator; YE105_C2368; phage(gi126010897) | 2e-11 | Click |
| 7 | complement(2725590..2726072) | PROPHAGE_Xantho_33913: ISxcc1 transposase; YE105_C2369; phage(gi21232565) | 6e-27 | Click |
| 8 | 2726146..2727363 | PHAGE_Entero_PsP3: gp24; YE105_C2370; phage(gi41057376) | 4e-85 | Click |
| 9 | 2727366..2727818 | PROPHAGE_Salmon_Ty2: putative phage tail protein; YE105_C2371; phage(gi29143763) | 6e-47 | Click |
| 10 | 2727815..2728957 | PHAGE_Entero_PsP3: gp26; YE105_C2372; phage(gi41057378) | 3e-147 | Click |
| 11 | 2729048..2729059 | attR CTATGATGCATT | N/A | Click |
| 12 | complement(2729356..2730171) | PHAGE_Pseudo_F116: hypothetical protein F116p41; YE105_C2373; phage(gi56692954) | 7e-06 | Click |
| 13 | 2730538..2731482 | PHAGE_Entero_PsP3: gp27; YE105_C2374; phage(gi41057380) | 2e-102 | Click |
| 14 | complement(2731809..2732150) | PHAGE_Entero_PsP3: gp28; YE105_C2375; phage(gi41057381) | 6e-10 | Click |
| 15 | 2734483..2734494 | attR ATAAAAACAAAA | N/A | Click |
Region 6, total : 11 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3301918..3301947 | attL TTCGATTCCAGTCGGGGACACCATTAGCAC | N/A | Click |
| 2 | 3302103..3303266 | PROPHAGE_Escher_Sakai: putative integrase; YE105_C2844; phage(gi15833788) | 3e-138 | Click |
| 3 | complement(3303297..3304286) | PHAGE_Salmon_SSU5: hypothetical protein; YE105_C2845; phage(gi410491447) | 1e-13 | Click |
| 4 | complement(3304301..3305107) | PHAGE_Salmon_SSU5: hypothetical protein; YE105_C2846; phage(gi410491447) | 5e-14 | Click |
| 5 | complement(3305699..3306046) | PHAGE_Vibrio_kappa: hypothetical zinc-finger protein; YE105_C2848; phage(gi165970253) | 4e-19 | Click |
| 6 | 3305999..3306154 | hypothetical protein; YE105_C2847 | N/A | Click |
| 7 | complement(3306358..3309042) | PHAGE_Entero_P4: DNA primase; YE105_C2849; phage(gi9627512) | 3e-47 | Click |
| 8 | complement(3309094..3309312) | hypothetical protein; YE105_C2850 | N/A | Click |
| 9 | complement(3309314..3309484) | Phage immunity repressor protein; YE105_C2851 | N/A | Click |
| 10 | 3309620..3309811 | hypothetical protein; YE105_C2852 | N/A | Click |
| 11 | complement(3309986..3310507) | PHAGE_Aeromo_phiO18P: putative capsid scaffolding protein; YE105_C2853; phage(gi148727152) | 8e-34 | Click |
| 12 | complement(3310516..3311517) | PHAGE_Aeromo_phiO18P: putative major capsid protein; YE105_C2854; phage(gi148727153) | 7e-70 | Click |
| 13 | 3313203..3313232 | attR TTCGATTCCAGTCGGGGACACCATTAGCAC | N/A | Click |