Definition Agrobacterium sp. H13-3 chromosome, complete genome.
Accession NC_015183
Length 2,823,930
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 889259..890518  PHAGE_Strept_6: terminase large subunit; AGROH133_04837; phage(gi93007440)  3e-51  Click
2 890968..891606  PHAGE_Rhizob_3: p029; AGROH133_04838; phage(gi195546559)  2e-19  Click
3 891650..891973  hypothetical protein; AGROH133_04839  N/A  Click
4 892160..893326  PHAGE_Tetras_SI1: portal protein; AGROH133_04840; phage(gi472342257)  1e-18  Click
5 893514..893834  hypothetical protein; AGROH133_04841  N/A  Click
6 893876..894466  PHAGE_Tetras_SI1: phage prohead protease; AGROH133_04845; phage(gi472342256)  3e-24  Click
7 894366..895772  PHAGE_Entero_phiP27: putative major capsid protein; AGROH133_04846; phage(gi18249904)  1e-78  Click
8 895885..896454  PHAGE_Rhodob_RcapNL: hypothetical protein; AGROH133_04847; phage(gi461474967)  2e-11  Click
9 896458..896793  PHAGE_Marino_P12026: phage head-tail adaptor; AGROH133_04848; phage(gi399528325)  2e-08  Click
10 896790..897185  hypothetical protein; AGROH133_04849  N/A  Click
11 complement(897193..898392)  MFS permease; AGROH133_04850  N/A  Click
12 898422..898907  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; AGROH133_04861; phage(gi461474972)  1e-15  Click
13 898907..899263  hypothetical protein; AGROH133_04862  N/A  Click
14 899260..899481  phage conserved hypothetical protein; AGROH133_04863  N/A  Click
15 899579..900160  PHAGE_Entero_2009a: putative bacteriophage tail tape measure protein; AGROH133_04864; phage(gi225220098)  7e-14  Click
16 900251..900889  PHAGE_Roseob_1: putative glycoside hydrolase; AGROH133_04865; phage(gi331028135)  2e-39  Click
17 900886..901770  PHAGE_Tetras_SI1: hypothetical protein; AGROH133_04866; phage(gi472342235)  8e-32  Click
18 901767..902201  PHAGE_Roseob_1: phage cell wall peptidase; AGROH133_04867; phage(gi331028137)  8e-36  Click
19 902219..906022  PHAGE_Caulob_phiCbK: putative tail protein; AGROH133_04868; phage(gi414087812)  1e-25  Click
Region 2, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1452672..1453100)  PHAGE_Celeri_P12053L: GCN5-related N-acetyltransferase; AGROH133_06177; phage(gi399528882)  5e-10  Click
2 complement(1453100..1453765)  hypothetical protein; AGROH133_06178  N/A  Click
3 1453963..1454517  hypothetical protein; AGROH133_06179  N/A  Click
4 complement(1454748..1455458)  hypothetical protein; AGROH133_06184  N/A  Click
5 1455479..1455973  hypothetical protein; AGROH133_06185  N/A  Click
6 complement(1456030..1458231)  PHAGE_Xantho_CP1: putative tail length tape measure protein; AGROH133_06186; phage(gi431811013)  8e-20  Click
7 complement(1458708..1458824)  hypothetical protein; AGROH133_06187  N/A  Click
8 complement(1458908..1459267)  hypothetical protein; AGROH133_06188  N/A  Click
9 complement(1459269..1459700)  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; AGROH133_06189; phage(gi461474972)  1e-20  Click
10 complement(1459735..1460145)  PHAGE_Strept_phiSASD1: gp33; AGROH133_06190; phage(gi298103498)  6e-11  Click
11 complement(1460145..1460639)  hypothetical protein; AGROH133_06191  N/A  Click
12 complement(1460636..1460992)  PHAGE_Rhodob_RcapNL: phage head-tail adapter protein; AGROH133_06192; phage(gi461474968)  8e-09  Click
13 complement(1461118..1461465)  PHAGE_Burkho_phi1026b: gp7; AGROH133_06193; phage(gi38707897)  3e-06  Click
14 complement(1461467..1461808)  PHAGE_Sulfit_pCB2047_B: hypothetical protein; AGROH133_06194; phage(gi472342349)  5e-09  Click
15 complement(1461786..1462052)  hypothetical protein; AGROH133_06198  N/A  Click
16 complement(1462100..1463302)  PHAGE_Xantho_CP1: putative head protein; AGROH133_06199; phage(gi431811003)  1e-93  Click
17 complement(1463314..1464432)  PHAGE_Burkho_BcepNazgul: prohead protease ClpP; AGROH133_06200; phage(gi91214231)  3e-36  Click
18 complement(1464442..1465671)  PHAGE_Xantho_CP1: putative head portal protein; AGROH133_06201; phage(gi431811001)  3e-62  Click
19 complement(1465696..1467339)  PHAGE_Rhizob_3: terminase large subunit; AGROH133_06202; phage(gi195546532)  0.0  Click
20 complement(1467352..1467807)  PHAGE_Rhizob_3: terminase small subunit; AGROH133_06203; phage(gi195546531)  1e-55  Click
21 complement(1468229..1469110)  PHAGE_Mycoba_Llij: gp100; AGROH133_06204; phage(gi109392286)  3e-15  Click
Region 3, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1754353..1754378  attL    AAATGGTCGGAGTGGAGAGATTCGAA  N/A  Click
2 complement(1759551..1762265)  PHAGE_Cronob_phiES15: putative tail tape measure protein; AGROH133_06876; phage(gi401817605)  3e-27  Click
3 complement(1762277..1763896)  PHAGE_Entero_mEp235: terminase large subunit; AGROH133_06877; phage(gi428781812)  1e-40  Click
4 complement(1763897..1764289)  PHAGE_Burkho_2: gp1, phage terminase, small subunit, P27 family; AGROH133_06878; phage(gi134288627)  2e-05  Click
5 complement(1764286..1764612)  PHAGE_Entero_mEp235: hypothetical protein; AGROH133_06879; phage(gi428781819)  5e-09  Click
6 complement(1764600..1765052)  hypothetical protein; AGROH133_06880  N/A  Click
7 complement(1765028..1765453)  PHAGE_Rhizob_3: p011; AGROH133_06881; phage(gi195546542)  4e-11  Click
8 complement(1765443..1765745)  PHAGE_Entero_mEp235: head-tail connector II; AGROH133_06882; phage(gi428781817)  3e-06  Click
9 complement(1765742..1766512)  hypothetical protein; AGROH133_06883  N/A  Click
10 1766548..1766733  hypothetical protein; AGROH133_06885  N/A  Click
11 complement(1766847..1767464)  hypothetical protein; AGROH133_06886  N/A  Click
12 complement(1767468..1769039)  PHAGE_Azospi_Cd: Phage major capsid protein; AGROH133_06887; phage(gi168495136)  3e-48  Click
13 complement(1769036..1769374)  hypothetical protein; AGROH133_06888  N/A  Click
14 complement(1769371..1770594)  PHAGE_Salmon_ST64B: Portal Protein; AGROH133_06889; phage(gi23505449)  9e-41  Click
15 complement(1770727..1772280)  PROPHAGE_Escher_Sakai: putative integrase; AGROH133_06890; phage(gi15834496)  5e-09  Click
16 1772369..1772394  attR    AAATGGTCGGAGTGGAGAGATTCGAA  N/A  Click