Definition Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence.
Accession NC_015062
Length 616,549
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 56 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 68649..68661  attL    AAAAATGAAAAAA  N/A  Click
2 complement(70823..72112)  PHAGE_Salmon_vB_SosS_Oslo: minor tail protein; Rahaq_4503; phage(gi399528788)  5e-44  Click
3 72125..72138  attL    GCATAAAAAAACCC  N/A  Click
4 complement(72171..72407)  PHAGE_Entero_N15: Cor; Rahaq_4504; phage(gi9630488)  6e-26  Click
5 complement(72532..73206)  PHAGE_Entero_2009a: hypothetical protein EpSSL_gp19; Rahaq_4505; phage(gi225220091)  2e-26  Click
6 complement(73523..76708)  PHAGE_Entero_HK225: central tail fiber; Rahaq_4506; phage(gi428782397)  0.0  Click
7 complement(76769..77347)  PHAGE_Entero_mEp237: tail assembly protein I; Rahaq_4507; phage(gi435439284)  7e-75  Click
8 complement(77400..77807)  PHAGE_Escher_HK639: hypothetical protein; Rahaq_4508; phage(gi356870616)  7e-06  Click
9 complement(77868..78599)  PHAGE_Entero_mEp235: minor tail protein K; Rahaq_4509; phage(gi428781828)  9e-127  Click
10 complement(78602..80260)  PHAGE_Entero_mEpX2: minor tail protein; Rahaq_4510; phage(gi428765630)  6e-97  Click
11 complement(80260..80616)  PHAGE_Cronob_phiES15: putative minor tail protein; Rahaq_4511; phage(gi401817607)  2e-26  Click
12 complement(80635..82986)  PHAGE_Cronob_ESP2949_1: tail tape-measure protein; Rahaq_4512; phage(gi422935479)  1e-155  Click
13 complement(82967..83281)  PHAGE_Entero_HK630: tail assembly protein GT; Rahaq_4513; phage(gi428782802)  1e-25  Click
14 complement(83302..83718)  PHAGE_Entero_mEp213: minor tail protein G; Rahaq_4514; phage(gi428782600)  8e-26  Click
15 complement(83729..84466)  PHAGE_Entero_mEp213: minor tail protein V; Rahaq_4515; phage(gi428782599)  2e-94  Click
16 complement(84474..84878)  PHAGE_Entero_mEp213: tail protein U; Rahaq_4516; phage(gi428782598)  3e-45  Click
17 complement(84875..85429)  PHAGE_Entero_mEp237: minor tail protein Z; Rahaq_4517; phage(gi435439275)  1e-64  Click
18 complement(85441..85716)  PHAGE_Entero_mEp460: hypothetical protein; Rahaq_4518; phage(gi428782323)  1e-18  Click
19 complement(85709..86035)  PHAGE_Entero_mEp460: hypothetical protein; Rahaq_4519; phage(gi428782322)  2e-18  Click
20 complement(86121..88151)  PHAGE_Entero_mEp460: putative protease/scaffold protein; Rahaq_4520; phage(gi428782321)  0.0  Click
21 complement(88129..89607)  PHAGE_Entero_mEp460: portal protein; Rahaq_4521; phage(gi428782320)  0.0  Click
22 complement(89604..89822)  PHAGE_Entero_mEp460: hypothetical protein; Rahaq_4522; phage(gi428782319)  1e-21  Click
23 complement(89819..91921)  PHAGE_Entero_mEp460: terminase large subunit; Rahaq_4523; phage(gi428782318)  0.0  Click
24 complement(91921..92409)  PHAGE_Entero_mEp460: terminase small subunit; Rahaq_4524; phage(gi428782317)  6e-41  Click
25 92841..93134  hypothetical protein; Rahaq_4525  N/A  Click
26 complement(93131..93634)  PHAGE_Erwini_PEp14: Rz protein; Rahaq_4526; phage(gi374531879)  5e-25  Click
27 complement(93627..94166)  PHAGE_Entero_mEp460: endolysin; Rahaq_4527; phage(gi428782372)  2e-69  Click
28 complement(94166..94369)  PHAGE_Entero_mEp460: porin; Rahaq_4528; phage(gi428782370)  4e-18  Click
29 complement(94805..95860)  PHAGE_Entero_mEp460: DNA methylase; Rahaq_4529; phage(gi428782369)  1e-133  Click
30 complement(96130..96381)  hypothetical protein; Rahaq_4530  N/A  Click
31 96587..96799  hypothetical protein; Rahaq_4531  N/A  Click
32 96908..97249  hypothetical protein; Rahaq_4532  N/A  Click
33 complement(97969..98790)  PHAGE_Cronob_ENT39118: antitermination protein; Rahaq_4534; phage(gi431811056)  2e-60  Click
34 complement(98804..99817)  PHAGE_Entero_mEp460: hypothetical protein; Rahaq_4535; phage(gi428782365)  2e-76  Click
35 complement(99969..100724)  PHAGE_Escher_HK639: adenine specific methyltransferase; Rahaq_4536; phage(gi356870635)  1e-75  Click
36 complement(100721..101569)  PHAGE_Stx2_c_86: hypothetical protein Stx2-86_gp70; Rahaq_4537; phage(gi116222063)  2e-13  Click
37 complement(101566..102588)  PHAGE_Entero_mEp390: hypothetical protein; Rahaq_4538; phage(gi428782706)  7e-46  Click
38 complement(102578..102937)  hypothetical protein; Rahaq_4539  N/A  Click
39 complement(102945..103451)  PHAGE_Entero_mEp460: hypothetical protein; Rahaq_4540; phage(gi428782356)  3e-11  Click
40 complement(103493..103732)  PHAGE_Salmon_ST160: Cro; Rahaq_4541; phage(gi318065926)  2e-14  Click
41 103850..104560  PHAGE_Entero_ST104: CI; Rahaq_4542; phage(gi46358671)  2e-78  Click
42 104664..104906  PHAGE_Entero_mEp234: HicA protein; Rahaq_4543; phage(gi428782292)  8e-31  Click
43 104910..105368  PHAGE_Entero_mEp234: HicB protein; Rahaq_4544; phage(gi428782291)  4e-49  Click
44 105368..105763  PHAGE_Entero_mEp234: hypothetical protein; Rahaq_4545; phage(gi428782290)  7e-43  Click
45 106275..106484  hypothetical protein; Rahaq_4546  N/A  Click
46 106515..106673  hypothetical protein; Rahaq_4547  N/A  Click
47 107490..107981  PHAGE_Yersin_PY54: hypothetical protein PY54p47; Rahaq_4548; phage(gi33770556)  2e-38  Click
48 107983..108279  PHAGE_Entero_N15: gp57; Rahaq_4549; phage(gi9630522)  3e-19  Click
49 108479..108721  excisionase; Rahaq_4550  N/A  Click
50 108705..109829  PHAGE_Entero_mEp235: integrase; Rahaq_4551; phage(gi428781836)  7e-63  Click
51 complement(109904..110575)  porin Gram-negative type; Rahaq_4552  N/A  Click
52 110949..110962  attR    GCATAAAAAAACCC  N/A  Click
53 complement(111185..111373)  hypothetical protein; Rahaq_4553  N/A  Click
54 112175..112954  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; Rahaq_4555; phage(gi116326757)  9e-21  Click
55 complement(113019..113885)  AraC family transcriptional regulator; Rahaq_4556  N/A  Click
56 complement(114306..115874)  tannase and feruloyl esterase; Rahaq_4557  N/A  Click
57 116242..116409  lipoprotein; Rahaq_4558  N/A  Click
58 complement(116707..118848)  PHAGE_Microc_LMM01: hypothetical protein MaLMM01_gp062; Rahaq_4559; phage(gi117530233)  4e-09  Click
59 complement(118995..120119)  PHAGE_Salmon_vB_SosS_Oslo: integrase; Rahaq_4560; phage(gi399528791)  2e-25  Click
60 123970..123982  attR    AAAAATGAAAAAA  N/A  Click
Region 2, total : 69 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(540604..541635)  PHAGE_Parame_1: hypothetical protein; Rahaq_4951; phage(gi9632181)  3e-12  Click
2 541769..541780  attL    CTTCTGCAAAAC  N/A  Click
3 complement(541815..542939)  PHAGE_Entero_mEp235: integrase; Rahaq_4952; phage(gi428781836)  6e-60  Click
4 complement(542923..543165)  phage excisionase; Rahaq_4953  N/A  Click
5 complement(543244..543747)  PHAGE_Pectob_ZF40: hypothetical protein; Rahaq_4954; phage(gi422936646)  1e-35  Click
6 complement(543744..546122)  PHAGE_Pectob_ZF40: putative exonuclease; Rahaq_4955; phage(gi422936647)  3e-102  Click
7 complement(546142..546441)  hypothetical protein; Rahaq_4956  N/A  Click
8 complement(546664..546960)  hypothetical protein; Rahaq_4957  N/A  Click
9 complement(547109..547264)  hypothetical protein; Rahaq_4958  N/A  Click
10 complement(547581..547943)  PHAGE_Crocei_P2559S: hypothetical protein; Rahaq_4959; phage(gi399528638)  4e-09  Click
11 complement(548149..548610)  PHAGE_Entero_mEpX2: prophage repressor; Rahaq_4960; phage(gi428765656)  2e-12  Click
12 548714..548962  PHAGE_Salmon_SPN3UB: putative Cro; Rahaq_4961; phage(gi423262425)  8e-07  Click
13 548973..549437  PHAGE_Pectob_ZF40: putative cII repressor; Rahaq_4962; phage(gi422936652)  1e-16  Click
14 549454..549690  OmpA/MotB domain protein; Rahaq_4963  N/A  Click
15 549687..549854  hypothetical protein; Rahaq_4964  N/A  Click
16 549857..550843  PHAGE_Entero_phiP27: hypothetical protein P27p17; Rahaq_4965; phage(gi18249881)  3e-19  Click
17 550833..551279  PHAGE_Escher_HK639: replication protein 14; Rahaq_4966; phage(gi356870655)  2e-26  Click
18 551407..551883  hypothetical protein; Rahaq_4967  N/A  Click
19 551876..552298  hypothetical protein; Rahaq_4968  N/A  Click
20 552295..552789  PHAGE_Salmon_SPN3UB: putative Eaa protein; Rahaq_4969; phage(gi423262432)  5e-20  Click
21 552786..552974  hypothetical protein; Rahaq_4970  N/A  Click
22 552974..553234  PHAGE_Klebsi_KP36: hypothetical protein; Rahaq_4971; phage(gi429216252)  3e-11  Click
23 553238..553921  PHAGE_Myxoco_Mx8: hypothetical protein Mx8p14; Rahaq_4972; phage(gi15320584)  5e-44  Click
24 553918..554121  PHAGE_Pectob_ZF40: hypothetical protein; Rahaq_4973; phage(gi422936659)  9e-08  Click
25 554114..554623  PHAGE_Stx2_c_1717: hypothetical protein Stx2-1717_gp06; Rahaq_4974; phage(gi209447131)  1e-63  Click
26 554620..554853  hypothetical protein; Rahaq_4975  N/A  Click
27 554850..555296  hypothetical protein; Rahaq_4976  N/A  Click
28 555296..555478  hypothetical protein; Rahaq_4977  N/A  Click
29 555475..555771  hypothetical protein; Rahaq_4978  N/A  Click
30 555811..555993  hypothetical protein; Rahaq_4979  N/A  Click
31 556225..556419  hypothetical protein; Rahaq_4980  N/A  Click
32 556512..557108  PHAGE_Entero_mEp237: hypothetical protein; Rahaq_4981; phage(gi435439315)  5e-57  Click
33 557105..557401  PHAGE_Burkho_Bcep22: Bcep22gp20; Rahaq_4982; phage(gi38640327)  2e-25  Click
34 557398..558072  PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; Rahaq_4983; phage(gi169257244)  4e-27  Click
35 558245..558463  PHAGE_Stx2_c_1717: holin protein S-like protein; Rahaq_4984; phage(gi209447171)  5e-12  Click
36 558466..558996  PHAGE_Yersin_PY54: lysis protein; Rahaq_4985; phage(gi33770570)  3e-84  Click
37 558989..559522  PHAGE_Pectob_ZF40: hypothetical protein; Rahaq_4986; phage(gi422936675)  7e-39  Click
38 559519..559761  hypothetical protein; Rahaq_4987  N/A  Click
39 559758..560315  Ig domain protein group 1 domain protein; Rahaq_4988  N/A  Click
40 560384..560566  hypothetical protein; Rahaq_4989  N/A  Click
41 560581..561366  PHAGE_Escher_TL_2011c: putative terminase small subunit; Rahaq_4990; phage(gi418487072)  2e-16  Click
42 561573..563192  PHAGE_Burkho_BcepB1A: gp33 TerL; Rahaq_4991; phage(gi48697520)  9e-151  Click
43 563192..564643  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p31; Rahaq_4992; phage(gi31544029)  4e-44  Click
44 564660..565253  PHAGE_Haemop_Aaphi23: putative minor head protein; Rahaq_4993; phage(gi31544030)  5e-15  Click
45 565303..566508  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p33; Rahaq_4994; phage(gi31544033)  8e-21  Click
46 566515..566994  bacteriophage protein; Rahaq_4995  N/A  Click
47 567007..567951  PHAGE_Vibrio_CP_T1: putative major capsid protein; Rahaq_4996; phage(gi418489228)  3e-15  Click
48 568015..568374  hypothetical protein; Rahaq_4997  N/A  Click
49 568340..568756  PHAGE_Pseudo_NH_4: putative structural protein; Rahaq_4998; phage(gi418488473)  5e-12  Click
50 568756..569385  PHAGE_Edward_MSW_3: hypothetical protein; Rahaq_4999; phage(gi448261047)  2e-09  Click
51 569372..569758  hypothetical protein; Rahaq_5000  N/A  Click
52 569751..570296  bacteriophage protein; Rahaq_5001  N/A  Click
53 570302..571444  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p39; Rahaq_5002; phage(gi31544040)  8e-47  Click
54 571454..571894  PHAGE_Erwini_phiEa104: hypothetical protein; Rahaq_5003; phage(gi327198445)  8e-06  Click
55 571898..572326  hypothetical protein; Rahaq_5004  N/A  Click
56 572504..574438  PHAGE_Haemop_Aaphi23: putative tail length tape measure protein; Rahaq_5005; phage(gi31544043)  2e-14  Click
57 574438..575037  PHAGE_Psychr_pOW20_A: hypothetical protein; Rahaq_5006; phage(gi472339841)  7e-06  Click
58 575038..575346  bacteriophage protein; Rahaq_5007  N/A  Click
59 575346..576371  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p45; Rahaq_5008; phage(gi31544047)  3e-19  Click
60 576371..576712  hypothetical protein; Rahaq_5009  N/A  Click
61 576740..577126  hypothetical protein; Rahaq_5010  N/A  Click
62 577199..577951  PHAGE_Haemop_Aaphi23: putative baseplate protein; Rahaq_5011; phage(gi31544048)  4e-23  Click
63 577953..578306  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p47; Rahaq_5012; phage(gi31544050)  1e-11  Click
64 578306..579505  PHAGE_Iodoba_phiPLPE: gp61 putative baseplate protein; Rahaq_5013; phage(gi197085675)  5e-42  Click
65 579502..580272  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p49; Rahaq_5014; phage(gi31544052)  2e-15  Click
66 580319..582697  PHAGE_Burkho_KS10: hypothetical protein KS10_gp48; Rahaq_5015; phage(gi198449310)  4e-95  Click
67 582709..583461  hypothetical protein; Rahaq_5016  N/A  Click
68 583552..584271  PHAGE_Erwini_vB_EamM_Y2: gp86; Rahaq_5017; phage(gi422934776)  8e-18  Click
69 584283..584702  PHAGE_Entero_SfV: tail fibre assembly protein; Rahaq_5018; phage(gi19549010)  4e-13  Click
70 584759..584770  attR    CTTCTGCAAAAC  N/A  Click
71 complement(584876..585511)  PHAGE_Acanth_1: hypothetical protein ATCV1_Z679L; Rahaq_5019; phage(gi155371626)  1e-21  Click