Definition Variovorax paradoxus EPS chromosome, complete genome.
Accession NC_014931
Length 6,550,056
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1534102..1534698  PHAGE_Prochl_P_SSM7: PRGA-formyltransferase; Varpa_1376; phage(gi326784531)  6e-27  Click
2 1534736..1535068  PHAGE_Pseudo_2: predicted phage capsid scaffolding protein; Varpa_1377; phage(gi281306688)  5e-05  Click
3 complement(1535089..1535322)  PHAGE_Bacill_PM1: hypothetical protein; Varpa_1378; phage(gi472438288)  8e-06  Click
4 1535377..1537230  peptidase m48 ste24p; Varpa_1379  N/A  Click
5 1537259..1538530  PHAGE_Pectob_phiTE: hypothetical protein; Varpa_1380; phage(gi448244884)  1e-05  Click
6 1538663..1539877  PHAGE_Ralsto_phiRSA1: transposase IRSO15-like; Varpa_1381; phage(gi145708108)  3e-05  Click
7 complement(1540026..1540199)  ribosomal protein l33; Varpa_1382  N/A  Click
8 complement(1540211..1540444)  ribosomal protein l28; Varpa_1383  N/A  Click
9 complement(1540627..1541586)  PHAGE_Lactoc_949: putative ribonucleotide diphosphate reductase alpha subunit; Varpa_1384; phage(gi327197952)  5e-25  Click
Region 2, total : 64 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2169456..2169467  attL    CGCTGCGCGGTC  N/A  Click
2 complement(2169743..2170726)  PHAGE_Salmon_ST64B: Integrase protein; Varpa_1971; phage(gi23505472)  3e-17  Click
3 complement(2170768..2171019)  hypothetical protein; Varpa_1972  N/A  Click
4 2171047..2171316  hypothetical protein; Varpa_1973  N/A  Click
5 2171313..2171555  hypothetical protein; Varpa_1974  N/A  Click
6 complement(2171558..2171755)  hypothetical protein; Varpa_1975  N/A  Click
7 complement(2171752..2171964)  hypothetical protein; Varpa_1976  N/A  Click
8 complement(2172084..2173508)  hypothetical protein; Varpa_1977  N/A  Click
9 complement(2173531..2174628)  PHAGE_Xantho_CP2: hypothetical protein; Varpa_1978; phage(gi448245209)  1e-16  Click
10 complement(2174637..2175566)  PHAGE_Rhodoc_REQ2: exonuclease; Varpa_1979; phage(gi372449878)  7e-18  Click
11 complement(2175563..2176378)  PHAGE_Pseudo_D3: Orf52; Varpa_1980; phage(gi9635643)  1e-28  Click
12 complement(2176375..2176611)  protein serine phosphatase with gaf(s) sensor(s); Varpa_1981  N/A  Click
13 complement(2176608..2176727)  hypothetical protein; Varpa_1982  N/A  Click
14 complement(2176724..2176915)  hypothetical protein; Varpa_1983  N/A  Click
15 complement(2176912..2177679)  PHAGE_Thalas_BA3: hypothetical protein BA3_0002; Varpa_1984; phage(gi160700596)  4e-26  Click
16 complement(2177783..2177980)  hypothetical protein; Varpa_1985  N/A  Click
17 complement(2178157..2178888)  PHAGE_Burkho_phiE125: putative repressor protein; Varpa_1986; phage(gi17975214)  9e-28  Click
18 complement(2179374..2179634)  hypothetical protein; Varpa_1988  N/A  Click
19 2179734..2179913  hypothetical protein; Varpa_1989  N/A  Click
20 2179941..2180255  hypothetical protein; Varpa_1990  N/A  Click
21 2180255..2181421  PHAGE_Burkho_phiE125: putative DNA cytosine methylase; Varpa_1991; phage(gi17975218)  1e-113  Click
22 2181418..2182263  PHAGE_Mycoba_Brujita: gp61; Varpa_1992; phage(gi206599605)  7e-12  Click
23 2182260..2182562  hypothetical protein; Varpa_1993  N/A  Click
24 2182562..2183425  PHAGE_Salmon_vB_SosS_Oslo: NinC protein; Varpa_1994; phage(gi399528823)  2e-11  Click
25 2183427..2184380  PHAGE_Pseudo_phi297: putative DNA replication protein O; Varpa_1995; phage(gi374531278)  9e-16  Click
26 2184377..2184619  hypothetical protein; Varpa_1996  N/A  Click
27 2184616..2185344  hypothetical protein; Varpa_1997  N/A  Click
28 2185341..2185604  hypothetical protein; Varpa_1998  N/A  Click
29 2185601..2186035  hypothetical protein; Varpa_1999  N/A  Click
30 2186032..2186532  hypothetical protein; Varpa_2000  N/A  Click
31 2186529..2186750  hypothetical protein; Varpa_2001  N/A  Click
32 2186747..2187280  PHAGE_Burkho_Bcep176: gp5; Varpa_2002; phage(gi77864630)  2e-16  Click
33 2187297..2187851  PHAGE_Pseudo_F116: hypothetical protein F116p37; Varpa_2003; phage(gi56692953)  1e-39  Click
34 complement(2188138..2188770)  two component transcriptional regulator luxr family; Varpa_2004  N/A  Click
35 2188941..2189774  alpha/beta hydrolase fold protein; Varpa_2005  N/A  Click
36 2189780..2190907  pas/pac sensor signal transduction histidine kinase; Varpa_2006  N/A  Click
37 2190947..2191906  PHAGE_Pseudo_F116: terminase small subunit; Varpa_2007; phage(gi56692920)  3e-78  Click
38 2191890..2193665  PHAGE_Pseudo_F116: terminase large subunit; Varpa_2008; phage(gi56692921)  0.0  Click
39 2193675..2196011  PHAGE_Pseudo_F116: portal protein; Varpa_2009; phage(gi56692922)  0.0  Click
40 complement(2196016..2196267)  hypothetical protein; Varpa_2010  N/A  Click
41 complement(2196738..2198189)  hypothetical protein; Varpa_2011  N/A  Click
42 2198341..2199495  PHAGE_Pseudo_F116: hypothetical protein F116p42; Varpa_2012; phage(gi56692955)  6e-92  Click
43 2199536..2200825  PHAGE_Pseudo_F116: virion structural protein; Varpa_2013; phage(gi56692923)  4e-159  Click
44 2200883..2201362  PHAGE_Pseudo_F116: virion structural protein; Varpa_2014; phage(gi56692924)  2e-39  Click
45 2201418..2201990  PHAGE_Pseudo_F116: hypothetical protein F116p45; Varpa_2015; phage(gi56692956)  2e-12  Click
46 2201987..2202661  PHAGE_Pseudo_F116: hypothetical protein F116p46; Varpa_2016; phage(gi56692957)  4e-31  Click
47 2202661..2203884  PHAGE_Pseudo_F116: hypothetical protein F116p52; Varpa_2017; phage(gi56692963)  2e-17  Click
48 2203874..2204374  PHAGE_Pseudo_F116: hypothetical protein F116p53; Varpa_2018; phage(gi56692964)  6e-07  Click
49 2204386..2204814  PHAGE_Mycoba_Troll4: gp34; Varpa_2019; phage(gi206599829)  8e-08  Click
50 2204854..2205951  hypothetical protein; Varpa_2020  N/A  Click
51 2205948..2207528  hypothetical protein; Varpa_2021  N/A  Click
52 2207525..2209420  PHAGE_Pseudo_F116: hypothetical protein F116p56; Varpa_2022; phage(gi56692967)  2e-08  Click
53 2209422..2210432  PHAGE_Pseudo_F116: hypothetical protein F116p57; Varpa_2023; phage(gi56692968)  5e-05  Click
54 2210512..2212440  PHAGE_Pseudo_F116: hypothetical protein F116p58; Varpa_2024; phage(gi56692969)  8e-39  Click
55 complement(2212845..2213093)  hypothetical protein; Varpa_2025  N/A  Click
56 2213193..2222513  PHAGE_Pseudo_F116: hypothetical protein F116p60; Varpa_2026; phage(gi56692971)  0.0  Click
57 2223621..2223977  PHAGE_Halomo_1: hypothetical protein HAPgp14; Varpa_2027; phage(gi167832359)  4e-13  Click
58 2223974..2226487  PHAGE_Flavob_11b: hypothetical protein PHG11b_46; Varpa_2028; phage(gi53793622)  6e-32  Click
59 2226484..2226657  hypothetical protein; Varpa_2029  N/A  Click
60 2226698..2226967  hypothetical protein; Varpa_2030  N/A  Click
61 2226967..2227518  PHAGE_Pseudo_F116: lysozyme; Varpa_2031; phage(gi56692926)  2e-61  Click
62 2227765..2228055  PHAGE_Burkho_Bcep176: gp57; Varpa_2032; phage(gi117949422)  6e-15  Click
63 complement(2228052..2228303)  hypothetical protein; Varpa_2033  N/A  Click
64 2228669..2228959  hypothetical protein; Varpa_2035  N/A  Click
65 complement(2228996..2230021)  PHAGE_Stx2_c_I: hypothetical protein Stx2Ip137; Varpa_2036; phage(gi20065932)  4e-69  Click
66 2239232..2239243  attR    CGCTGCGCGGTC  N/A  Click