| Definition | Staphylococcus pseudintermedius HKU10-03 chromosome, complete genome. |
|---|---|
| Accession | NC_014925 |
| Length | 2,617,381 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 27 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 529856..529882 | attL CACAAAGATTTCGTCGTACTGCCCCCG | N/A | Click |
| 2 | 542254..544611 | PHAGE_Lactoc_Q54: putative ribonuclease; SPSINT_0495; phage(gi115304286) | 3e-100 | Click |
| 3 | 544627..545091 | tmRNA-binding protein SmpB; SPSINT_0496 | N/A | Click |
| 4 | 545165..545522 | tRNA | N/A | Click |
| 5 | complement(545632..546738) | PHAGE_Bacill_phIS3501: phage integrase; SPSINT_0497; phage(gi422934298) | 5e-78 | Click |
| 6 | complement(546728..547561) | PHAGE_Lactoc_bIL311: repressor; SPSINT_0498; phage(gi13095660) | 1e-12 | Click |
| 7 | 547741..547959 | PHAGE_Staphy_SpaA1: transcriptional regulator, pbsX; SPSINT_0499; phage(gi399498897) | 6e-07 | Click |
| 8 | 547971..548174 | hypothetical protein; SPSINT_0500 | N/A | Click |
| 9 | 548176..548385 | PHAGE_Staphy_phiMR25: hypothetical protein; SPSINT_0501; phage(gi189427130) | 5e-08 | Click |
| 10 | 548520..548822 | PHAGE_Staphy_PT1028: ORF016; SPSINT_0502; phage(gi66395180) | 5e-22 | Click |
| 11 | 548920..551289 | PHAGE_Lactoc_bIL310: helicase; SPSINT_0503; phage(gi13095886) | 1e-95 | Click |
| 12 | 551677..552018 | PHAGE_Staphy_PT1028: ORF013; SPSINT_0504; phage(gi66395177) | 1e-11 | Click |
| 13 | 552153..553331 | PHAGE_Clostr_phiMMP04: phage portal protein; SPSINT_0505; phage(gi414090444) | 3e-58 | Click |
| 14 | 553318..553884 | PHAGE_Entero_1: prohead protease; SPSINT_0506; phage(gi225626394) | 1e-23 | Click |
| 15 | 553886..555121 | PHAGE_Clostr_phiMMP04: major capsid protein; SPSINT_0507; phage(gi414090446) | 3e-21 | Click |
| 16 | 555181..555462 | PHAGE_Clostr_phiSM101: putative DNA packaging protein; SPSINT_0508; phage(gi110804046) | 2e-06 | Click |
| 17 | 555521..555745 | PHAGE_Clostr_phiMMP04: HNH endonuclease; SPSINT_0509; phage(gi414090491) | 3e-06 | Click |
| 18 | 555883..556203 | PHAGE_Clostr_phiMMP04: hypothetical protein; SPSINT_0510; phage(gi414090493) | 1e-07 | Click |
| 19 | 556196..557839 | PHAGE_Clostr_phiMMP04: terminase; SPSINT_0511; phage(gi414090443) | 7e-146 | Click |
| 20 | 558412..558780 | hypothetical protein; SPSINT_0512 | N/A | Click |
| 21 | 559393..560187 | PHAGE_Strept_2: streptococcal superantigen SSA; SPSINT_0513; phage(gi28876204) | 5e-76 | Click |
| 22 | complement(560381..561172) | PHAGE_Lactob_Lj965: hypothetical protein Ljo_0291; SPSINT_0514; phage(gi41179221) | 1e-13 | Click |
| 23 | 562222..562644 | PHAGE_Bacill_Gamma: fosfomycin resistance protein; SPSINT_0515; phage(gi77020174) | 2e-34 | Click |
| 24 | complement(563146..563922) | PHAGE_Lactob_Lj965: hypothetical protein Ljo_0291; SPSINT_0516; phage(gi41179221) | 8e-23 | Click |
| 25 | complement(563954..564394) | PHAGE_Staphy_37: ORF031; SPSINT_0517; phage(gi66395758) | 2e-05 | Click |
| 26 | 564972..566195 | PHAGE_Mycoba_Rizal: gp168; SPSINT_0518; phage(gi203457498) | 1e-05 | Click |
| 27 | complement(566252..566623) | hypothetical protein; SPSINT_0519 | N/A | Click |
| 28 | complement(566634..567122) | PHAGE_Lactoc_bIL311: Orf17; SPSINT_0520; phage(gi13095675) | 8e-12 | Click |
| 29 | complement(567545..567967) | Organic hydroperoxide resistance protein; SPSINT_0521 | N/A | Click |
| 30 | 568113..569117 | PHAGE_Parame_1: hypothetical protein; SPSINT_0522; phage(gi9631622) | 8e-42 | Click |
| 31 | 576683..576709 | attR CACAAAGATTTCGTCGTACTGCCCCCG | N/A | Click |
Region 2, total : 61 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 583245..583263 | attL TCGAGATGGAAGGTAGTAT | N/A | Click |
| 2 | complement(583338..584387) | PHAGE_Staphy_phiETA2: integrase; SPSINT_0541; phage(gi122891715) | 0.0 | Click |
| 3 | complement(584448..584885) | PHAGE_Staphy_37: ORF039; SPSINT_0542; phage(gi66395766) | 6e-46 | Click |
| 4 | complement(584898..585065) | hypothetical protein; SPSINT_0543 | N/A | Click |
| 5 | complement(585077..585781) | PHAGE_Staphy_12: cI-like repressor; SPSINT_0544; phage(gi29028622) | 8e-87 | Click |
| 6 | 585915..586184 | PHAGE_Staphy_StB20: transcription repressor; SPSINT_0545; phage(gi431809734) | 1e-41 | Click |
| 7 | 586200..586955 | PHAGE_Staphy_55: ORF018; SPSINT_0546; phage(gi66396131) | 4e-131 | Click |
| 8 | 587454..587648 | PHAGE_Staphy_80alpha: hypothetical protein SPV-80A_gp09; SPSINT_0547; phage(gi148717851) | 2e-20 | Click |
| 9 | 587754..587921 | hypothetical protein; SPSINT_0548 | N/A | Click |
| 10 | complement(587918..588145) | hypothetical protein; SPSINT_0549 | N/A | Click |
| 11 | 588388..588531 | PHAGE_Staphy_92: ORF018; SPSINT_0550; phage(gi66396424) | 4e-11 | Click |
| 12 | 588528..588752 | PHAGE_Staphy_phiPV83: hypothetical protein phiPV83p12; SPSINT_0551; phage(gi9635689) | 1e-17 | Click |
| 13 | 588998..589258 | PHAGE_Staphy_187: ORF060; SPSINT_0552; phage(gi66395264) | 1e-08 | Click |
| 14 | 589270..589494 | hypothetical protein; SPSINT_0553 | N/A | Click |
| 15 | 589478..589963 | PHAGE_Deep_s_D6E: gp157-like protein; SPSINT_0554; phage(gi423262358) | 4e-30 | Click |
| 16 | 589964..590632 | PHAGE_Staphy_vB_SepiS_phiIPLA7: erf superfamily protein; SPSINT_0555; phage(gi399529156) | 4e-78 | Click |
| 17 | 590632..591069 | PHAGE_Staphy_StB27: DNA single-strand binding protein; SPSINT_0556; phage(gi431809693) | 5e-57 | Click |
| 18 | 591050..591244 | hypothetical protein; SPSINT_0557 | N/A | Click |
| 19 | 591253..591921 | PHAGE_Staphy_85: ORF020; SPSINT_0558; phage(gi66394890) | 6e-108 | Click |
| 20 | 591918..592631 | PHAGE_Staphy_85: ORF017; SPSINT_0559; phage(gi66394887) | 3e-72 | Click |
| 21 | 592641..593414 | PHAGE_Staphy_187: ORF014; SPSINT_0560; phage(gi66395229) | 3e-119 | Click |
| 22 | 594006..594224 | PHAGE_Staphy_EW: ORF072; SPSINT_0561; phage(gi66395861) | 7e-05 | Click |
| 23 | 594237..594557 | PHAGE_Staphy_2638A: ORF059; SPSINT_0562; phage(gi66395493) | 3e-10 | Click |
| 24 | 594718..595203 | PHAGE_Staphy_37: ORF028; SPSINT_0563; phage(gi66395755) | 7e-15 | Click |
| 25 | 595200..595877 | PHAGE_Staphy_IPLA35: putative methyltransferase; SPSINT_0564; phage(gi215401130) | 4e-89 | Click |
| 26 | 595858..596058 | PHAGE_Staphy_2638A: ORF074; SPSINT_0565; phage(gi66395495) | 2e-22 | Click |
| 27 | 596055..596405 | PHAGE_Staphy_187: ORF048; SPSINT_0566; phage(gi66395259) | 1e-19 | Click |
| 28 | 596402..596620 | hypothetical protein; SPSINT_0567 | N/A | Click |
| 29 | 596617..597015 | PHAGE_Staphy_71: ORF034; SPSINT_0568; phage(gi66396074) | 4e-18 | Click |
| 30 | 597015..597272 | PHAGE_Staphy_X2: ORF058; SPSINT_0569; phage(gi66394720) | 2e-13 | Click |
| 31 | 597273..597434 | PHAGE_Staphy_26: hypothetical protein SAP26_gp56; SPSINT_0570; phage(gi304443294) | 2e-19 | Click |
| 32 | 597446..597757 | hypothetical protein; SPSINT_0571 | N/A | Click |
| 33 | 597750..598259 | PHAGE_Staphy_69: ORF026; SPSINT_0572; phage(gi66395318) | 4e-63 | Click |
| 34 | 598296..598445 | PHAGE_Staphy_2638A: ORF063; SPSINT_0573; phage(gi66395494) | 8e-15 | Click |
| 35 | complement(598549..599031) | hypothetical protein; SPSINT_0574 | N/A | Click |
| 36 | 599414..599761 | hypothetical protein; SPSINT_0575 | N/A | Click |
| 37 | 599843..600337 | PHAGE_Staphy_phiMR25: putative terminase small subunit; SPSINT_0576; phage(gi189427163) | 4e-75 | Click |
| 38 | 600339..601613 | PHAGE_Staphy_IPLA88: putative terminase large subunit; SPSINT_0577; phage(gi215401206) | 0.0 | Click |
| 39 | 601625..603070 | PHAGE_Staphy_187: ORF003; SPSINT_0578; phage(gi66395218) | 0.0 | Click |
| 40 | 603063..604412 | PHAGE_Staphy_187: ORF009; SPSINT_0579; phage(gi66395224) | 3e-176 | Click |
| 41 | 604409..604606 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p05; SPSINT_0580; phage(gi134287340) | 3e-06 | Click |
| 42 | 604624..605367 | PHAGE_Staphy_187: ORF021; SPSINT_0581; phage(gi66395236) | 4e-89 | Click |
| 43 | 605385..606296 | PHAGE_Staphy_187: ORF011; SPSINT_0582; phage(gi66395226) | 4e-161 | Click |
| 44 | 606386..606835 | PHAGE_Staphy_187: ORF031; SPSINT_0583; phage(gi66395244) | 3e-69 | Click |
| 45 | 606847..607179 | PHAGE_Staphy_187: ORF042; SPSINT_0584; phage(gi66395254) | 5e-54 | Click |
| 46 | 607481..607831 | PHAGE_Staphy_187: ORF049; SPSINT_0585; phage(gi66395260) | 1e-51 | Click |
| 47 | 607843..608238 | PHAGE_Staphy_187: ORF039; SPSINT_0586; phage(gi66395251) | 4e-49 | Click |
| 48 | 608256..608909 | PHAGE_Staphy_187: ORF022; SPSINT_0587; phage(gi66395237) | 1e-117 | Click |
| 49 | 608969..609349 | PHAGE_Staphy_187: ORF043; SPSINT_0588; phage(gi66395255) | 1e-62 | Click |
| 50 | 609379..609729 | PHAGE_Staphy_187: ORF047; SPSINT_0589; phage(gi66395258) | 4e-61 | Click |
| 51 | 609746..612865 | PHAGE_Staphy_187: ORF001; SPSINT_0590; phage(gi66395216) | 0.0 | Click |
| 52 | 612878..613810 | PHAGE_Staphy_187: ORF010; SPSINT_0591; phage(gi66395225) | 3e-172 | Click |
| 53 | 613823..615220 | PHAGE_Staphy_187: ORF004; SPSINT_0592; phage(gi66395219) | 0.0 | Click |
| 54 | 615224..615916 | PHAGE_Staphy_187: ORF019; SPSINT_0593; phage(gi66395234) | 1e-105 | Click |
| 55 | 615928..616971 | PHAGE_Staphy_187: ORF008; SPSINT_0594; phage(gi66395223) | 0.0 | Click |
| 56 | 616988..618259 | PHAGE_Staphy_187: ORF006; SPSINT_0595; phage(gi66395221) | 0.0 | Click |
| 57 | 618292..618666 | PHAGE_Staphy_phi5967PVL: hypothetical protein; SPSINT_0596; phage(gi431810282) | 7e-48 | Click |
| 58 | 618790..620679 | PHAGE_Staphy_187: ORF002; SPSINT_0597; phage(gi66395217) | 0.0 | Click |
| 59 | 620699..620953 | PHAGE_Staphy_3: holin; SPSINT_0598; phage(gi156604071) | 8e-36 | Click |
| 60 | 620966..621721 | PHAGE_Staphy_3: amidase; SPSINT_0599; phage(gi156604072) | 2e-134 | Click |
| 61 | 622132..622272 | PHAGE_Staphy_92: ORF053; SPSINT_0600; phage(gi66396457) | 1e-11 | Click |
| 62 | 622397..622612 | PHAGE_Staphy_85: ORF042; SPSINT_0601; phage(gi66394907) | 1e-19 | Click |
| 63 | 623742..623760 | attR TCGAGATGGAAGGTAGTAT | N/A | Click |
Region 3, total : 60 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1308338..1308355 | attL TCTGCCCTTTTTTTGCCC | N/A | Click |
| 2 | complement(1308892..1310184) | PHAGE_Lactob_AQ113: phosphoadenosine phosphosulfate reductase; SPSINT_1242; phage(gi446730264) | 1e-91 | Click |
| 3 | complement(1310181..1311332) | PHAGE_Lactob_AQ113: hypothetical protein; SPSINT_1243; phage(gi446730263) | 5e-52 | Click |
| 4 | complement(1311392..1311508) | hypothetical protein; SPSINT_1244 | N/A | Click |
| 5 | complement(1311744..1312406) | hypothetical protein; SPSINT_1245 | N/A | Click |
| 6 | 1312536..1312688 | hypothetical protein; SPSINT_1246 | N/A | Click |
| 7 | 1312685..1313032 | hypothetical protein; SPSINT_1247 | N/A | Click |
| 8 | complement(1313169..1314116) | PHAGE_Staphy_SA11: hypothetical protein; SPSINT_1248; phage(gi422935746) | 4e-86 | Click |
| 9 | complement(1314109..1314402) | PHAGE_Staphy_StB27: holin; SPSINT_1249; phage(gi431809723) | 3e-26 | Click |
| 10 | complement(1314570..1316570) | PHAGE_Staphy_vB_SepiS_phiIPLA5: tail fiber protein; SPSINT_1250; phage(gi399528920) | 2e-35 | Click |
| 11 | complement(1316641..1317912) | PHAGE_Lactob_phig1e: minor capsid protein; SPSINT_1251; phage(gi23455814) | 2e-19 | Click |
| 12 | complement(1317929..1318477) | PHAGE_Staphy_187: ORF008; SPSINT_1252; phage(gi66395223) | 3e-90 | Click |
| 13 | complement(1318471..1318959) | PHAGE_Staphy_187: ORF008; SPSINT_1253; phage(gi66395223) | 4e-45 | Click |
| 14 | complement(1318971..1319591) | PHAGE_Staphy_187: ORF019; SPSINT_1254; phage(gi66395234) | 7e-76 | Click |
| 15 | complement(1319598..1319798) | PHAGE_Staphy_187: ORF004; SPSINT_1255; phage(gi66395219) | 5e-08 | Click |
| 16 | complement(1319785..1321350) | PHAGE_Staphy_SMSAP5: prophage endopeptidase tail family protein; SPSINT_1256; phage(gi422935801) | 4e-150 | Click |
| 17 | complement(1321360..1322184) | PHAGE_Staphy_SMSAP5: phage tail family protein; SPSINT_1257; phage(gi422935810) | 1e-93 | Click |
| 18 | complement(1322187..1327775) | PHAGE_Staphy_SMSAP5: phage tail tape measure protein; SPSINT_1258; phage(gi422935797) | 0.0 | Click |
| 19 | complement(1327789..1327944) | PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp49; SPSINT_1259; phage(gi215401157) | 2e-13 | Click |
| 20 | complement(1327986..1328336) | PHAGE_Staphy_12: SLT orf 116b-like protein; SPSINT_1260; phage(gi29028656) | 1e-32 | Click |
| 21 | complement(1328444..1328905) | PHAGE_Staphy_SMSAP5: major tail protein; SPSINT_1261; phage(gi422935817) | 2e-37 | Click |
| 22 | complement(1329000..1329680) | PHAGE_Staphy_SMSAP5: major tail protein; SPSINT_1262; phage(gi422935812) | 5e-88 | Click |
| 23 | complement(1329717..1330112) | PHAGE_Staphy_SMSAP5: hypothetical protein; SPSINT_1263; phage(gi422935824) | 6e-51 | Click |
| 24 | complement(1330114..1330515) | PHAGE_Staphy_SMSAP5: putative DNA-binding protein; SPSINT_1264; phage(gi422935822) | 4e-54 | Click |
| 25 | complement(1330512..1330874) | PHAGE_Staphy_SMSAP5: hypothetical protein; SPSINT_1265; phage(gi422935831) | 5e-21 | Click |
| 26 | complement(1330855..1331151) | PHAGE_Staphy_2638A: ORF036; SPSINT_1266; phage(gi66395481) | 2e-17 | Click |
| 27 | complement(1331220..1332347) | PHAGE_Staphy_P954: major capsid protein a; SPSINT_1267; phage(gi257136406) | 2e-153 | Click |
| 28 | complement(1332376..1333098) | PHAGE_Staphy_P954: protease/scaffold protein; SPSINT_1268; phage(gi257136405) | 6e-70 | Click |
| 29 | complement(1333088..1334242) | PHAGE_Staphy_P954: HK97 family phage portal protein; SPSINT_1269; phage(gi257136404) | 8e-116 | Click |
| 30 | complement(1334257..1335897) | PHAGE_Lister_B025: putative terminase large subunit; SPSINT_1270; phage(gi157325219) | 0.0 | Click |
| 31 | complement(1335894..1336193) | PHAGE_Staphy_2638A: ORF031; SPSINT_1271; phage(gi66395478) | 4e-21 | Click |
| 32 | complement(1336330..1336665) | PHAGE_Lister_B025: gp65; SPSINT_1272; phage(gi157325282) | 5e-25 | Click |
| 33 | complement(1337339..1337455) | PHAGE_Staphy_2638A: ORF113; SPSINT_1273; phage(gi66395505) | 2e-06 | Click |
| 34 | complement(1337931..1338464) | PHAGE_Strept_PH15: hypothetical protein phiPH15_gp24; SPSINT_1274; phage(gi190151439) | 1e-22 | Click |
| 35 | complement(1338466..1338786) | hypothetical protein; SPSINT_1275 | N/A | Click |
| 36 | complement(1338787..1339149) | hypothetical protein; SPSINT_1276 | N/A | Click |
| 37 | complement(1339192..1339542) | PHAGE_Staphy_2638A: ORF029; SPSINT_1277; phage(gi66395476) | 1e-43 | Click |
| 38 | complement(1339539..1339724) | PHAGE_Staphy_2638A: ORF074; SPSINT_1278; phage(gi66395495) | 3e-17 | Click |
| 39 | complement(1339957..1340208) | hypothetical protein; SPSINT_1279 | N/A | Click |
| 40 | complement(1340358..1340564) | hypothetical protein; SPSINT_1280 | N/A | Click |
| 41 | complement(1340728..1341510) | PHAGE_Staphy_55: ORF016; SPSINT_1281; phage(gi66396129) | 1e-91 | Click |
| 42 | complement(1341525..1342289) | PHAGE_Staphy_StB27: DNA replication protein; SPSINT_1282; phage(gi431809696) | 6e-63 | Click |
| 43 | complement(1342341..1343060) | PHAGE_Clostr_phiCD38_2: hypothetical protein; SPSINT_1283; phage(gi333798150) | 1e-36 | Click |
| 44 | complement(1343076..1343483) | PHAGE_Strept_MM1: hypothetical protein MM1p17; SPSINT_1284; phage(gi15088759) | 3e-16 | Click |
| 45 | complement(1343498..1343959) | PHAGE_Staphy_TEM123: single-stranded DNA-binding protein; SPSINT_1285; phage(gi388570359) | 5e-52 | Click |
| 46 | complement(1343952..1344596) | PHAGE_Staphy_StB27: hypothetical protein; SPSINT_1286; phage(gi431809691) | 2e-61 | Click |
| 47 | complement(1344659..1345573) | PHAGE_Staphy_TEM123: RecT protein; SPSINT_1287; phage(gi388570318) | 2e-134 | Click |
| 48 | complement(1345587..1345787) | hypothetical protein; SPSINT_1288 | N/A | Click |
| 49 | complement(1345781..1347727) | PHAGE_Staphy_phiN315: hypothetical protein SA1795; SPSINT_1289; phage(gi30043973) | 0.0 | Click |
| 50 | complement(1347740..1348000) | PHAGE_Staphy_phiNM3: hypothetical protein; SPSINT_1290; phage(gi118725070) | 1e-08 | Click |
| 51 | complement(1348087..1348383) | PHAGE_Staphy_phiETA2: hypothetical protein phiETA2_gp13; SPSINT_1291; phage(gi122891727) | 3e-07 | Click |
| 52 | complement(1348385..1348561) | hypothetical protein; SPSINT_1292 | N/A | Click |
| 53 | complement(1348576..1348839) | PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp11; SPSINT_1293; phage(gi215401119) | 4e-33 | Click |
| 54 | 1348826..1349392 | PHAGE_Staphy_X2: ORF029; SPSINT_1294; phage(gi66394698) | 6e-10 | Click |
| 55 | complement(1349416..1349598) | hypothetical protein; SPSINT_1295 | N/A | Click |
| 56 | complement(1349795..1350022) | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp07; SPSINT_1296; phage(gi209363559) | 5e-09 | Click |
| 57 | 1350198..1350509 | PHAGE_Staphy_phi2958PVL: probable transcriptional repressor; SPSINT_1297; phage(gi209363558) | 2e-31 | Click |
| 58 | 1350523..1350984 | PHAGE_Staphy_CNPH82: hypothetical protein cn34; SPSINT_1298; phage(gi119953712) | 1e-38 | Click |
| 59 | 1351031..1351639 | PHAGE_Cafete_BV_PW1: hypothetical protein; SPSINT_1299; phage(gi310831192) | 2e-05 | Click |
| 60 | 1351700..1352197 | PHAGE_Staphy_IPLA35: putative integrase; SPSINT_1300; phage(gi215401109) | 9e-32 | Click |
| 61 | 1352169..1352924 | PHAGE_Staphy_SMSAP5: site-specific recombinase; SPSINT_1301; phage(gi422935807) | 4e-52 | Click |
| 62 | 1352925..1352942 | attR TCTGCCCTTTTTTTGCCC | N/A | Click |