| Definition | Rhodopseudomonas palustris DX-1 chromosome, complete genome. |
|---|---|
| Accession | NC_014834 |
| Length | 5,404,117 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 16 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1511310..1513181 | PHAGE_Roseob_SIO1: gp7; Rpdx1_1418; phage(gi9964615) | 5e-06 | Click |
| 2 | 1513190..1514797 | PHAGE_Ictalu_1: ORF50; Rpdx1_1419; phage(gi9626871) | 3e-06 | Click |
| 3 | 1515105..1517783 | PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Rpdx1_1420; phage(gi414087138) | 1e-27 | Click |
| 4 | 1517935..1518867 | PHAGE_Cyanop_MED4_117: hypothetical protein; Rpdx1_1421; phage(gi472341838) | 7e-08 | Click |
| 5 | 1518991..1519659 | sugar isomerase; Rpdx1_1422 | N/A | Click |
| 6 | 1519801..1520739 | PHAGE_Synech_S_SKS1: nucleotide-sugar epimerase; Rpdx1_1423; phage(gi472340882) | 2e-16 | Click |
| 7 | 1520736..1521773 | PHAGE_Acanth_1: hypothetical protein ATCV1_Z544R; Rpdx1_1424; phage(gi155371491) | 3e-37 | Click |
| 8 | 1521782..1522441 | PHAGE_Pelagi_HTVC008M: methyltransferase; Rpdx1_1425; phage(gi460042595) | 3e-07 | Click |
| 9 | 1522438..1523412 | PHAGE_Synech_S_SM2: transketolase central region-containing protein; Rpdx1_1426; phage(gi326781943) | 5e-09 | Click |
| 10 | 1523423..1524475 | PHAGE_Synech_S_SM2: transketolase central region-containing protein; Rpdx1_1427; phage(gi326781943) | 2e-12 | Click |
| 11 | 1524483..1524629 | hypothetical protein; Rpdx1_1428 | N/A | Click |
| 12 | 1524620..1525675 | PHAGE_Synech_S_SM2: zinc-containing alcohol dehydrogenase superfamily protein; Rpdx1_1429; phage(gi326781942) | 8e-54 | Click |
| 13 | 1525681..1527165 | PHAGE_Synech_S_CAM1: bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Rpdx1_1430; phage(gi472339599) | 6e-08 | Click |
| 14 | 1527162..1528091 | PHAGE_Sphing_PAU: gp187; Rpdx1_1431; phage(gi435844690) | 3e-10 | Click |
| 15 | 1528088..1528894 | short-chain dehydrogenase/reductase SDR; Rpdx1_1432 | N/A | Click |
| 16 | 1528918..1530720 | PHAGE_Ostreo_2: putative acetolactate synthase large subunit; Rpdx1_1433; phage(gi314055125) | 2e-87 | Click |
Region 2, total : 10 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2644799..2644812 | attL CCTCATGGTGAGGA | N/A | Click |
| 2 | 2644977..2646194 | PHAGE_Pseudo_YuA: hypothetical protein; Rpdx1_2457; phage(gi162135126) | 4e-07 | Click |
| 3 | 2646544..2647188 | hexapeptide repeat-containing transferase; Rpdx1_2458 | N/A | Click |
| 4 | 2648575..2648841 | PROPHAGE_Xantho_33913: IS1404 transposase; Rpdx1_2459; phage(gi21232568) | 1e-26 | Click |
| 5 | 2648835..2649764 | PROPHAGE_Xantho_33913: IS1477 transposase; Rpdx1_2460; phage(gi77747809) | 6e-60 | Click |
| 6 | complement(2649924..2650784) | PHAGE_Entero_mEp390: hypothetical protein; Rpdx1_2461; phage(gi428782711) | 4e-30 | Click |
| 7 | complement(2650944..2651435) | PHAGE_Staphy_X2: ORF035; Rpdx1_2462; phage(gi66394704) | 8e-06 | Click |
| 8 | complement(2651448..2652323) | putative anthranilate synthase component I protein; Rpdx1_2463 | N/A | Click |
| 9 | complement(2652729..2656502) | PHAGE_Halovi_HVTV_1: ribonucleotide reductase alpha subunit; Rpdx1_2464; phage(gi443404588) | 1e-24 | Click |
| 10 | 2657168..2658067 | PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; Rpdx1_2465; phage(gi163932195) | 4e-05 | Click |
| 11 | 2658174..2659163 | PHAGE_Parame_1: hypothetical protein; Rpdx1_2466; phage(gi9631622) | 6e-26 | Click |
| 12 | 2664655..2664668 | attR CCTCATGGTGAGGA | N/A | Click |
Region 3, total : 30 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2700445..2700457 | attL CAGGTTGAGCCGC | N/A | Click |
| 2 | 2700617..2701543 | PHAGE_Entero_P1: Cre; Rpdx1_2512; phage(gi46401628) | 8e-20 | Click |
| 3 | 2701543..2702217 | hypothetical protein; Rpdx1_2513 | N/A | Click |
| 4 | complement(2702342..2702848) | hypothetical protein; Rpdx1_2514 | N/A | Click |
| 5 | complement(2702848..2703114) | hypothetical protein; Rpdx1_2515 | N/A | Click |
| 6 | 2703274..2703525 | PHAGE_Bacill_SPP1: hypothetical protein SPP1p009; Rpdx1_2516; phage(gi22855054) | 8e-15 | Click |
| 7 | 2703577..2704128 | hypothetical protein; Rpdx1_2517 | N/A | Click |
| 8 | 2704180..2704581 | PHAGE_Lactoc_ul36: putative terminase small subunit; Rpdx1_2518; phage(gi21716107) | 1e-06 | Click |
| 9 | 2704556..2706070 | PHAGE_Xantho_Xp15: putative phage terminase large subunit; Rpdx1_2519; phage(gi66392134) | 3e-78 | Click |
| 10 | 2706070..2708382 | PHAGE_Brucel_Pr: putative portal protein; Rpdx1_2520; phage(gi418487847) | 2e-131 | Click |
| 11 | 2708382..2708732 | hypothetical protein; Rpdx1_2521 | N/A | Click |
| 12 | 2708792..2710027 | PHAGE_Brucel_Pr: structural protein; Rpdx1_2522; phage(gi418487851) | 6e-19 | Click |
| 13 | 2710052..2711071 | PHAGE_Brucel_Pr: major head protein; Rpdx1_2523; phage(gi418487852) | 1e-52 | Click |
| 14 | 2711160..2711675 | PHAGE_Myxoco_Mx8: major virion structural protein; Rpdx1_2524; phage(gi15320619) | 3e-28 | Click |
| 15 | 2711688..2711852 | hypothetical protein; Rpdx1_2525 | N/A | Click |
| 16 | 2711935..2712711 | PHAGE_Brucel_Pr: hypothetical protein; Rpdx1_2526; phage(gi418487854) | 1e-21 | Click |
| 17 | 2712708..2713409 | PHAGE_Brucel_Pr: structural protein; Rpdx1_2527; phage(gi418487855) | 2e-31 | Click |
| 18 | 2713409..2715085 | PHAGE_Brucel_Pr: structural protein; Rpdx1_2528; phage(gi418487856) | 1e-85 | Click |
| 19 | 2715082..2715465 | PHAGE_Burkho_Bcep22: Bcep22gp69; Rpdx1_2529; phage(gi38640375) | 2e-06 | Click |
| 20 | 2715468..2716493 | PHAGE_Brucel_Pr: structural protein; Rpdx1_2530; phage(gi418487858) | 3e-66 | Click |
| 21 | 2716493..2718238 | PHAGE_Brucel_Pr: putative peptidoglycan hydrolase; Rpdx1_2531; phage(gi418487860) | 5e-06 | Click |
| 22 | 2718239..2720401 | PHAGE_Sulfit_pCB2047_C: hypothetical protein; Rpdx1_2532; phage(gi472341754) | 1e-08 | Click |
| 23 | 2720676..2721470 | PHAGE_Cyanop_MED4_117: hypothetical protein; Rpdx1_2533; phage(gi472341838) | 6e-05 | Click |
| 24 | 2721553..2722434 | PHAGE_Brucel_Pr: putative tail collar protein; Rpdx1_2534; phage(gi418487862) | 2e-13 | Click |
| 25 | 2722438..2724417 | PHAGE_Prochl_Syn1: virion structural protein; Rpdx1_2535; phage(gi326784191) | 1e-18 | Click |
| 26 | 2724492..2724764 | hypothetical protein; Rpdx1_2536 | N/A | Click |
| 27 | 2724761..2725309 | PHAGE_Burkho_Bcep176: gp58; Rpdx1_2537; phage(gi77864683) | 1e-16 | Click |
| 28 | 2725314..2725811 | hypothetical protein; Rpdx1_2538 | N/A | Click |
| 29 | 2725759..2726028 | hypothetical protein; Rpdx1_2539 | N/A | Click |
| 30 | 2726025..2726312 | hypothetical protein; Rpdx1_2540 | N/A | Click |
| 31 | complement(2726380..2726760) | PHAGE_Iodoba_phiPLPE: hypothetical protein phiPLPE_45; Rpdx1_2541; phage(gi197085659) | 9e-16 | Click |
| 32 | 2728515..2728527 | attR CAGGTTGAGCCGC | N/A | Click |
Region 4, total : 29 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3153138..3154736 | PHAGE_Entero_Min27: putative large subunit terminase; Rpdx1_2950; phage(gi170783661) | 1e-36 | Click |
| 2 | 3154733..3156754 | PHAGE_Pseudo_tf: portal protein; Rpdx1_2951; phage(gi388604635) | 1e-55 | Click |
| 3 | 3156764..3157258 | hypothetical protein; Rpdx1_2952 | N/A | Click |
| 4 | 3157309..3157572 | hypothetical protein; Rpdx1_2953 | N/A | Click |
| 5 | 3157591..3158643 | PHAGE_Pseudo_tf: scaffolding protein; Rpdx1_2954; phage(gi388604633) | 2e-15 | Click |
| 6 | 3158670..3159584 | PHAGE_Pseudo_tf: major head protein; Rpdx1_2955; phage(gi388604632) | 2e-32 | Click |
| 7 | 3159643..3159930 | acriflavin resistance protein; Rpdx1_2956 | N/A | Click |
| 8 | 3159934..3160557 | PHAGE_Pseudo_tf: phage particle protein; Rpdx1_2957; phage(gi388604630) | 1e-06 | Click |
| 9 | 3160558..3162237 | PHAGE_Roseob_SIO1: gp7; Rpdx1_2958; phage(gi9964615) | 1e-45 | Click |
| 10 | 3162234..3162653 | PHAGE_Sinorh_PBC5: hypothetical protein PBC5p15; Rpdx1_2959; phage(gi18071254) | 1e-07 | Click |
| 11 | 3162880..3163509 | PHAGE_Burkho_Bcep176: gp58; Rpdx1_2960; phage(gi77864683) | 5e-23 | Click |
| 12 | 3163509..3163898 | hypothetical protein; Rpdx1_2961 | N/A | Click |
| 13 | 3163867..3164106 | hypothetical protein; Rpdx1_2962 | N/A | Click |
| 14 | 3164282..3164521 | M protein type 3; Rpdx1_2963 | N/A | Click |
| 15 | complement(3164577..3164813) | PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p52; Rpdx1_2964; phage(gi45862234) | 3e-08 | Click |
| 16 | complement(3164886..3165143) | PHAGE_Mycoba_Faith1: gp54; Rpdx1_2965; phage(gi338827066) | 2e-06 | Click |
| 17 | complement(3165143..3165298) | hypothetical protein; Rpdx1_2966 | N/A | Click |
| 18 | complement(3165298..3165453) | PHAGE_Bacill_SPO1: gp21.6; Rpdx1_2967; phage(gi209972941) | 8e-06 | Click |
| 19 | complement(3165453..3165914) | PHAGE_Pseudo_KPP10: hypothetical protein; Rpdx1_2968; phage(gi327198153) | 9e-14 | Click |
| 20 | complement(3165892..3166527) | PHAGE_Cyanop_PSS2: hypothetical protein PSS2_gp058; Rpdx1_2969; phage(gi254729520) | 4e-15 | Click |
| 21 | complement(3166524..3166715) | hypothetical protein; Rpdx1_2970 | N/A | Click |
| 22 | complement(3166708..3167310) | hypothetical protein; Rpdx1_2971 | N/A | Click |
| 23 | complement(3167318..3167470) | hypothetical protein; Rpdx1_2972 | N/A | Click |
| 24 | complement(3167467..3167640) | hypothetical protein; Rpdx1_2973 | N/A | Click |
| 25 | complement(3167658..3167963) | hypothetical protein; Rpdx1_2974 | N/A | Click |
| 26 | complement(3167939..3168655) | PHAGE_Synech_P60: exonuclease; Rpdx1_2975; phage(gi18640491) | 7e-36 | Click |
| 27 | complement(3168712..3168804) | hypothetical protein; Rpdx1_2976 | N/A | Click |
| 28 | complement(3168950..3169147) | hypothetical protein; Rpdx1_2977 | N/A | Click |
| 29 | complement(3169352..3171436) | PHAGE_Pseudo_1: putative DNA polymerase; Rpdx1_2978; phage(gi29366719) | 4e-109 | Click |
Region 5, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(3869028..3871703) | PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Rpdx1_3607; phage(gi414087138) | 8e-25 | Click |
| 2 | complement(3871902..3872540) | PHAGE_Roseob_1: putative glycoside hydrolase; Rpdx1_3608; phage(gi331028135) | 2e-35 | Click |
| 3 | complement(3872629..3873219) | PHAGE_Shigel_EP23: phage tail length tape-measure protein 1; Rpdx1_3609; phage(gi371496286) | 2e-15 | Click |
| 4 | complement(3873219..3873419) | hypothetical protein; Rpdx1_3610 | N/A | Click |
| 5 | complement(3873416..3873733) | gene transfer agent (GTA)-like protein; Rpdx1_3611 | N/A | Click |
| 6 | complement(3873743..3874150) | PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Rpdx1_3612; phage(gi461474972) | 1e-20 | Click |
| 7 | complement(3874163..3874573) | PHAGE_Rhodob_RcapNL: gene transfer agent (GTA) orfg8-like protein; Rpdx1_3613; phage(gi461474971) | 2e-11 | Click |
| 8 | complement(3874570..3874890) | PHAGE_Entero_mEp235: hypothetical protein; Rpdx1_3614; phage(gi428781819) | 3e-08 | Click |
| 9 | complement(3874887..3875456) | PHAGE_Rhodob_RcapNL: hypothetical protein; Rpdx1_3615; phage(gi461474967) | 7e-10 | Click |
| 10 | 3875518..3876285 | PHAGE_Neodip_NPV: hypothetical protein; Rpdx1_3616; phage(gi48843635) | 2e-08 | Click |
| 11 | 3876370..3876681 | hypothetical protein; Rpdx1_3617 | N/A | Click |
| 12 | complement(3876695..3877990) | PHAGE_Strept_6: terminase large subunit; Rpdx1_3618; phage(gi93007440) | 6e-69 | Click |
| 13 | complement(3877932..3878888) | hypothetical protein; Rpdx1_3619 | N/A | Click |
| 14 | 3879058..3879324 | PHAGE_Entero_mEp234: HicB protein; Rpdx1_3620; phage(gi428782291) | 6e-07 | Click |
| 15 | complement(3879321..3879413) | hypothetical protein; Rpdx1_3621 | N/A | Click |
| 16 | 3879512..3880636 | hypothetical protein; Rpdx1_3622 | N/A | Click |
| 17 | complement(3880642..3882129) | PHAGE_Ostreo_1: hypothetical protein H665_p055; Rpdx1_3623; phage(gi260665925) | 1e-22 | Click |