Definition Lactobacillus amylovorus GRL 1112 chromosome, complete genome.
Accession NC_014724
Length 2,067,702
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 420899..423256  PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; LA2_02185; phage(gi310831476)  5e-18  Click
2 423337..423648  PHAGE_Lausan: thioredoxin; LA2_02190; phage(gi327409778)  5e-12  Click
3 complement(423860..425086)  PROPHAGE_Shewan_MR-1: IS110 family transposase; LA2_02195; phage(gi24375433)  1e-10  Click
4 425449..427764  PHAGE_Equid__9: envelope glycoprotein J; LA2_02200; phage(gi216905924)  4e-05  Click
5 428154..429380  PROPHAGE_Shewan_MR-1: IS110 family transposase; LA2_02205; phage(gi24375433)  8e-07  Click
6 complement(429396..429998)  PROPHAGE_Staphy_N315: transposase; LA2_02210; phage(gi15927655)  8e-21  Click
7 complement(430011..430631)  PROPHAGE_Staphy_N315: transposase; LA2_02215; phage(gi15927655)  1e-17  Click
Region 2, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1086170..1086184  attL    TTGAAAAAGATAAAT  N/A  Click
2 complement(1099454..1100605)  PHAGE_Lactob_Lj965: putative integrase; LA2_05530; phage(gi41179218)  4e-64  Click
3 complement(1100686..1100967)  hypothetical protein; LA2_05535  N/A  Click
4 1101085..1101729  hypothetical protein; LA2_05540  N/A  Click
5 complement(1101719..1101862)  hypothetical protein; LA2_05545  N/A  Click
6 1101950..1102189  hypothetical protein; LA2_05550  N/A  Click
7 1102356..1102589  hypothetical protein; LA2_05555  N/A  Click
8 complement(1102531..1103085)  hypothetical protein; LA2_05560  N/A  Click
9 complement(1103126..1103563)  PHAGE_Lactob_Lj965: putative repressor; LA2_05565; phage(gi41179223)  1e-16  Click
10 complement(1103566..1103904)  PHAGE_Lactob_Lj965: putative repressor; LA2_05570; phage(gi41179224)  5e-27  Click
11 1104062..1104265  PHAGE_Lactob_Lj965: putative cro repressor; LA2_05575; phage(gi41179225)  1e-16  Click
12 1104300..1105079  PHAGE_Lactob_KC5a: putative anti-repressor; LA2_05580; phage(gi90592591)  2e-69  Click
13 1105092..1105313  PHAGE_Lactob_phiadh: hypothetical protein phiadhp08; LA2_05585; phage(gi9633008)  2e-08  Click
14 1105315..1105482  hypothetical protein; LA2_05590  N/A  Click
15 1105495..1105794  PHAGE_Lactob_Lj965: hypothetical protein Ljo_1452b; LA2_05595; phage(gi41179256)  9e-05  Click
16 1105808..1106050  hypothetical protein; LA2_05600  N/A  Click
17 1106067..1106237  hypothetical protein; LA2_05605  N/A  Click
18 1106291..1106830  hypothetical protein; LA2_05610  N/A  Click
19 1106823..1107128  hypothetical protein; LA2_05615  N/A  Click
20 1107138..1107392  hypothetical protein; LA2_05620  N/A  Click
21 1107389..1108234  PHAGE_Lactob_KC5a: hypothetical protein; LA2_05625; phage(gi90592586)  4e-47  Click
22 1108237..1109049  PHAGE_Lactob_H: putative dnaA analog; LA2_05630; phage(gi148750873)  4e-47  Click
23 1122194..1122208  attR    TTGAAAAAGATAAAT  N/A  Click
Region 3, total : 36 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1112296..1112715  PHAGE_Lactob_AQ113: phage protein-Restriction nuclease superfamily; LA2_05690; phage(gi446730281)  3e-26  Click
2 1112943..1113413  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0303; LA2_05695; phage(gi41179235)  9e-10  Click
3 1113740..1113895  hypothetical protein; LA2_05700  N/A  Click
4 1114035..1114193  hypothetical protein; LA2_05705  N/A  Click
5 1114310..1114483  hypothetical protein; LA2_05710  N/A  Click
6 1114480..1114698  hypothetical protein; LA2_05715  N/A  Click
7 1114685..1115014  hypothetical protein; LA2_05720  N/A  Click
8 1115031..1115252  hypothetical protein; LA2_05725  N/A  Click
9 1115299..1115868  PHAGE_Lactob_phig1e: putative terminase small subunit; LA2_05730; phage(gi23455798)  3e-17  Click
10 1115865..1117337  PHAGE_Lister_B054: TerL; LA2_05735; phage(gi157325286)  8e-116  Click
11 1117350..1118732  PHAGE_Lister_B054: gp3; LA2_05740; phage(gi157325287)  3e-51  Click
12 1118722..1119522  PHAGE_Lister_B054: gp4; LA2_05745; phage(gi157325288)  2e-31  Click
13 complement(1119580..1119711)  hypothetical protein; LA2_05750  N/A  Click
14 1119806..1120336  PHAGE_Strept_PH15: putative HNH homing endonuclease; LA2_05755; phage(gi190151426)  3e-32  Click
15 1120410..1120763  hypothetical protein; LA2_05760  N/A  Click
16 1120760..1121971  PHAGE_Lister_B054: gp6; LA2_05765; phage(gi157325290)  2e-46  Click
17 1121971..1122537  PHAGE_Lister_B054: gp7; LA2_05770; phage(gi157325291)  5e-12  Click
18 1122552..1123511  PHAGE_Lister_B054: gp8; LA2_05775; phage(gi157325292)  5e-22  Click
19 1123528..1123914  PHAGE_Lister_B054: gp10; LA2_05780; phage(gi157325294)  4e-07  Click
20 1123911..1124582  PHAGE_Lister_B054: gp11; LA2_05785; phage(gi157325295)  3e-17  Click
21 1124602..1125015  hypothetical protein; LA2_05790  N/A  Click
22 1124999..1125544  hypothetical protein; LA2_05795  N/A  Click
23 1125548..1126882  PHAGE_Lister_B054: gp14; LA2_05800; phage(gi157325298)  6e-52  Click
24 1126897..1127328  PHAGE_Lister_B054: gp15; LA2_05805; phage(gi157325299)  6e-14  Click
25 1127388..1127834  hypothetical protein; LA2_05810  N/A  Click
26 1127839..1128051  hypothetical protein; LA2_05815  N/A  Click
27 1128097..1133583  PHAGE_Lactoc_bIL286: tail protein; LA2_05820; phage(gi13095795)  1e-60  Click
28 1133595..1134605  PHAGE_Lister_B054: gp19; LA2_05825; phage(gi157325303)  5e-12  Click
29 1134607..1135020  PHAGE_Lister_B054: gp20; LA2_05830; phage(gi157325304)  1e-11  Click
30 1135017..1136087  PHAGE_Lister_B054: gp21; LA2_05835; phage(gi157325305)  5e-15  Click
31 1136101..1136637  hypothetical protein; LA2_05840  N/A  Click
32 1136630..1137013  PHAGE_Lister_B054: gp23; LA2_05845; phage(gi157325307)  7e-08  Click
33 1137003..1138190  PHAGE_Lister_B054: gp24; LA2_05850; phage(gi157325308)  3e-61  Click
34 1138180..1139028  PHAGE_Lister_B054: gp25; LA2_05855; phage(gi157325309)  6e-08  Click
35 1139060..1140127  hypothetical protein; LA2_05860  N/A  Click
36 1140138..1142327  PHAGE_Lactob_KC5a: hypothetical protein; LA2_05865; phage(gi90592630)  5e-40  Click
Region 4, total : 68 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1441625..1442854)  PHAGE_Lactob_H: muramidase; LA2_07550; phage(gi148750862)  1e-55  Click
2 complement(1443028..1443384)  arsenate reductase; LA2_07555  N/A  Click
3 complement(1443386..1444282)  PHAGE_Acanth_moumouvirus: putative triacylglycerol lipase; LA2_07560; phage(gi441432487)  2e-12  Click
4 1444433..1444506  tRNA  N/A  Click
5 complement(1444684..1445574)  PHAGE_Lactob_H: muramidase; LA2_07565; phage(gi148750862)  2e-76  Click
6 complement(1445564..1446031)  helveticin ORF 2; LA2_07570  N/A  Click
7 complement(1446021..1446188)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1421; LA2_07575; phage(gi41179334)  7e-14  Click
8 complement(1446289..1446690)  PHAGE_Lactob_H: hypothetical protein; LA2_07580; phage(gi148750859)  3e-13  Click
9 complement(1446662..1446811)  hypothetical protein; LA2_07585  N/A  Click
10 1446753..1446766  attL    AAAAGATAACTTTT  N/A  Click
11 complement(1446811..1447353)  PHAGE_Lactob_1: hypothetical protein Lv-1_gp14; LA2_07590; phage(gi219563211)  3e-08  Click
12 complement(1447525..1448061)  PHAGE_Strept_Sfi11: putative anti-receptor; LA2_07595; phage(gi9635029)  8e-05  Click
13 complement(1448211..1448525)  hypothetical protein; LA2_07600  N/A  Click
14 complement(1448528..1450345)  PHAGE_Lactob_1: minor capsid protein; LA2_07605; phage(gi219563210)  4e-26  Click
15 complement(1450311..1450547)  hypothetical protein; LA2_07610  N/A  Click
16 complement(1450557..1454033)  PHAGE_Lactob_1: fiber tail protein; LA2_07615; phage(gi219563209)  3e-78  Click
17 complement(1454033..1454812)  PHAGE_Lactob_1: tail protein; LA2_07620; phage(gi219563208)  8e-15  Click
18 complement(1454802..1461317)  PHAGE_Strept_DT1: putative tail component protein; LA2_07625; phage(gi29165636)  3e-106  Click
19 complement(1461317..1461955)  PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp48; LA2_07630; phage(gi56694916)  6e-19  Click
20 complement(1461965..1462408)  hypothetical protein; LA2_07635  N/A  Click
21 complement(1462428..1463132)  PHAGE_Lactob_H: main tail protein gp19; LA2_07640; phage(gi148750845)  3e-14  Click
22 complement(1463135..1463569)  PHAGE_Lactob_phig1e: minor capsid protein; LA2_07645; phage(gi23455807)  3e-13  Click
23 complement(1463559..1463939)  PHAGE_Lactob_phig1e: minor capsid protein; LA2_07650; phage(gi23455806)  6e-15  Click
24 complement(1463940..1464290)  PHAGE_Lactob_H: hypothetical protein; LA2_07655; phage(gi148750842)  3e-15  Click
25 complement(1464283..1464675)  PHAGE_Lactob_H: hypothetical protein; LA2_07660; phage(gi148750841)  3e-06  Click
26 complement(1464692..1465756)  PHAGE_Lactob_phig1e: minor capsid protein; LA2_07665; phage(gi23455804)  1e-96  Click
27 complement(1465769..1466395)  PHAGE_Lactob_H: putative scaffolding protein, structural protein; LA2_07670; phage(gi148750839)  5e-19  Click
28 complement(1466486..1466701)  hypothetical protein; LA2_07675  N/A  Click
29 complement(1466703..1467866)  PHAGE_Lactob_H: hypothetical protein; LA2_07680; phage(gi148750884)  1e-106  Click
30 complement(1467811..1469442)  PHAGE_Lactob_H: minor structural protein gp61; LA2_07685; phage(gi148750838)  3e-143  Click
31 complement(1469458..1470714)  PHAGE_Lactob_H: putative terminase large subunit; LA2_07690; phage(gi148750837)  2e-166  Click
32 complement(1470731..1471417)  PHAGE_Entero_phiFL4A: terminase small subunit; LA2_07695; phage(gi281416464)  2e-31  Click
33 complement(1471433..1471711)  hypothetical protein; LA2_07700  N/A  Click
34 complement(1471728..1472039)  hypothetical protein; LA2_07705  N/A  Click
35 complement(1472051..1472392)  hypothetical protein; LA2_07710  N/A  Click
36 complement(1472403..1472747)  hypothetical protein; LA2_07715  N/A  Click
37 complement(1472753..1473454)  PHAGE_Riemer_RAP44: ParB-like nuclease; LA2_07720; phage(gi418489898)  4e-24  Click
38 complement(1473457..1473957)  hypothetical protein; LA2_07725  N/A  Click
39 complement(1473960..1474472)  hypothetical protein; LA2_07730  N/A  Click
40 complement(1474475..1475140)  PHAGE_Riemer_RAP44: adenine nucleotide alpha hydrolase-like protein; LA2_07735; phage(gi418489897)  4e-21  Click
41 complement(1475094..1475240)  PHAGE_Lactob_AQ113: hypothetical protein; LA2_07740; phage(gi446730284)  3e-10  Click
42 complement(1475258..1475635)  PHAGE_Crocei_P2559S: hypothetical protein; LA2_07745; phage(gi399528698)  3e-07  Click
43 complement(1476596..1477048)  PHAGE_Lactob_H: hypothetical protein; LA2_07750; phage(gi148750883)  1e-09  Click
44 complement(1477105..1477314)  hypothetical protein; LA2_07755  N/A  Click
45 complement(1477326..1477625)  hypothetical protein; LA2_07760  N/A  Click
46 complement(1477622..1477915)  hypothetical protein; LA2_07765  N/A  Click
47 complement(1477905..1478390)  hypothetical protein; LA2_07770  N/A  Click
48 complement(1478383..1479000)  hypothetical protein; LA2_07775  N/A  Click
49 complement(1479000..1479167)  hypothetical protein; LA2_07780  N/A  Click
50 complement(1479226..1479432)  hypothetical protein; LA2_07785  N/A  Click
51 complement(1479435..1480247)  PHAGE_Lactob_H: putative dnaC analog; LA2_07790; phage(gi148750874)  1e-44  Click
52 complement(1480234..1480473)  hypothetical protein; LA2_07795  N/A  Click
53 complement(1480466..1480873)  PHAGE_Clostr_phiC2: putative repressor; LA2_07800; phage(gi134287382)  5e-09  Click
54 complement(1480886..1481740)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp17; LA2_07805; phage(gi215401187)  1e-33  Click
55 complement(1481743..1482459)  PHAGE_Lactob_KC5a: hypothetical protein; LA2_07810; phage(gi90592586)  6e-54  Click
56 complement(1482452..1482709)  hypothetical protein; LA2_07815  N/A  Click
57 complement(1482709..1483035)  PHAGE_Lactob_KC5a: hypothetical protein; LA2_07820; phage(gi90592584)  2e-26  Click
58 complement(1483088..1483252)  PHAGE_Lactob_AQ113: hypothetical protein; LA2_07825; phage(gi446730269)  4e-12  Click
59 complement(1483264..1483443)  PHAGE_Lactob_AQ113: hypothetical protein; LA2_07830; phage(gi446730268)  4e-17  Click
60 complement(1483605..1483931)  PHAGE_Lactob_H: hypothetical protein; LA2_07835; phage(gi148750868)  9e-16  Click
61 complement(1483943..1484656)  PHAGE_Entero_phiFL3A: anti-repressor protein; LA2_07840; phage(gi281416221)  9e-33  Click
62 complement(1484692..1484880)  PHAGE_Lactoc_T: Cro repressor; LA2_07845; phage(gi14251161)  3e-10  Click
63 1485045..1485440  PHAGE_Lactob_Lj965: putative repressor; LA2_07850; phage(gi41179224)  2e-17  Click
64 1485443..1485865  PHAGE_Lactob_Lj965: putative repressor; LA2_07855; phage(gi41179223)  1e-56  Click
65 1485888..1486247  PHAGE_Strept_SM1: gp2; LA2_07860; phage(gi32469433)  3e-15  Click
66 1486261..1486806  hypothetical protein; LA2_07865  N/A  Click
67 1486572..1486585  attR    AAAAGATAACTTTT  N/A  Click
68 1486865..1487950  PHAGE_Lactob_LF1: phage integrase; LA2_07870; phage(gi418489411)  8e-83  Click
69 1487953..1488057  hypothetical protein; LA2_07875  N/A  Click
70 complement(1488180..1489760)  PHAGE_Bacill_SPBc2: ABC transporter; LA2_07880; phage(gi9630145)  4e-12  Click
71 complement(1489760..1491337)  PHAGE_Bacill_SPBc2: ABC transporter; LA2_07885; phage(gi9630145)  3e-15  Click