Definition Pantoea vagans C9-1 chromosome, complete genome.
Accession NC_014562
Length 4,024,986
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 28 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 989265..989276  attL    CTTCCCCAAAAT  N/A  Click
2 989658..989669  attL    ACTTCAAGCTTA  N/A  Click
3 complement(989971..991116)  PHAGE_Entero_mEp235: integrase; Pvag_0941; phage(gi428781836)  2e-57  Click
4 complement(991368..992093)  PHAGE_Pseudo_JBD24: hypothetical protein; Pvag_0943; phage(gi448245062)  8e-13  Click
5 993974..994462  PHAGE_Entero_cdtI: hypothetical protein PcdtI_gp43; Pvag_0944; phage(gi148609425)  2e-57  Click
6 994899..995846  PHAGE_Entero_phiP27: hypothetical protein P27p17; Pvag_0945; phage(gi18249881)  4e-36  Click
7 995859..997199  PHAGE_Salmon_E1: phage-related DNA-binding protein; Pvag_0946; phage(gi170676297)  5e-51  Click
8 997923..998909  PHAGE_Burkho_KS5: gp44; Pvag_0947; phage(gi327198042)  3e-07  Click
9 998917..1000251  spermidine/putrescine import ATP-binding protein potA; Pvag_0948  N/A  Click
10 1001266..1002306  PHAGE_Entero_cdtI: putative DNA methylase; Pvag_0949; phage(gi148609438)  5e-158  Click
11 1002341..1002727  PHAGE_Entero_mEp390: putative holin; Pvag_0950; phage(gi428782712)  3e-17  Click
12 1002706..1003020  PHAGE_Entero_mEp390: putative holin; Pvag_0951; phage(gi428782713)  1e-14  Click
13 1003013..1003480  PHAGE_Vibrio_vB_VchM_138: putative lysozyme; Pvag_0952; phage(gi422936605)  1e-23  Click
14 1003480..1003734  PHAGE_Entero_mEp390: hypothetical protein; Pvag_0953; phage(gi428782715)  7e-10  Click
15 1005357..1005800  PHAGE_Erwini_vB_EamM_Y2: gp84; Pvag_0954; phage(gi422934774)  1e-19  Click
16 1006061..1006690  PHAGE_Cronob_ENT47670: putative transposase; Pvag_0955; phage(gi431810514)  3e-87  Click
17 1006722..1007180  PHAGE_Cronob_ENT47670: hypothetical protein; Pvag_0956; phage(gi431810521)  6e-42  Click
18 1007322..1008125  PHAGE_Salmon_vB_SosS_Oslo: terminase large subunit; Pvag_0957; phage(gi399528760)  2e-151  Click
19 1008206..1009153  PHAGE_Salmon_vB_SosS_Oslo: portal protein; Pvag_0958; phage(gi399528761)  6e-108  Click
20 1009071..1010096  PHAGE_Salmon_vB_SosS_Oslo: putative head morphogenesis protein; Pvag_0959; phage(gi399528762)  3e-104  Click
21 1010223..1010621  PHAGE_Cronob_ENT47670: hypothetical protein; Pvag_0960; phage(gi431810532)  2e-36  Click
22 1010618..1011001  PHAGE_Cronob_ENT47670: hypothetical protein; Pvag_0961; phage(gi431810530)  3e-42  Click
23 1011062..1012342  PHAGE_Cronob_ENT47670: putative tail protein; Pvag_0962; phage(gi431810495)  3e-67  Click
24 1012398..1014830  PHAGE_Xantho_vB_XveM_DIBBI: putative tail fiber protein/putative EPS depolymerase; Pvag_0963; phage(gi389060429)  2e-88  Click
25 1015574..1015762  hypothetical protein; Pvag_0964  N/A  Click
26 1017289..1018305  hypothetical protein; Pvag_0965  N/A  Click
27 complement(1018571..1019596)  hypothetical protein; Pvag_0966  N/A  Click
28 complement(1020485..1021354)  hypothetical protein; Pvag_0967  N/A  Click
29 1022410..1022421  attR    ACTTCAAGCTTA  N/A  Click
30 1022548..1023531  PROPHAGE_Deinoc_R1: integrase/recombinase, putative; Pvag_0968; phage(gi15807824)  3e-08  Click
31 1023533..1025650  site-specific recombinase, phage integrase family; Pvag_0969  N/A  Click
32 1034533..1034544  attR    CTTCCCCAAAAT  N/A  Click
Region 2, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1710134..1711168)  PHAGE_Entero_PsP3: gp1; Pvag_1625; phage(gi41057353)  5e-145  Click
2 complement(1711168..1712931)  PHAGE_Entero_PsP3: gp3; Pvag_1626; phage(gi41057355)  0.0  Click
3 1712995..1713387  PHAGE_Entero_PsP3: gp5; Pvag_1627; phage(gi41057357)  2e-44  Click
4 1713391..1713963  PHAGE_Entero_PsP3: gp6; Pvag_1628; phage(gi41057358)  3e-55  Click
5 1714025..1714447  PHAGE_Erwini_ENT90: control of lysis protein; Pvag_1629; phage(gi431810965)  4e-50  Click
6 1714549..1715016  PHAGE_Entero_PsP3: gp13; Pvag_1630; phage(gi41057365)  6e-42  Click
7 1715013..1715459  PHAGE_Entero_PsP3: gp14; Pvag_1631; phage(gi41057366)  4e-43  Click
8 1715568..1717127  hypothetical protein; Pvag_1632  N/A  Click
9 1717571..1718155  PHAGE_Entero_PsP3: gp15; Pvag_1633; phage(gi41057367)  7e-61  Click
10 1718152..1718502  PHAGE_Entero_PsP3: gp16; Pvag_1634; phage(gi41057368)  3e-35  Click
11 1718507..1719415  PHAGE_Entero_PsP3: gp17; Pvag_1635; phage(gi41057369)  7e-122  Click
12 1719408..1720016  PROPHAGE_Salmon_Ty2: putative phage tail protein; Pvag_1636; phage(gi29143753)  2e-68  Click
13 1720013..1721059  PHAGE_Erwini_ENT90: phage tail collar domain protein; Pvag_1637; phage(gi431810938)  1e-80  Click
14 1721059..1721649  PHAGE_Entero_HK106: tail fiber assembly protein; Pvag_1638; phage(gi428783304)  1e-41  Click
15 complement(1721703..1722143)  hypothetical protein; Pvag_1639  N/A  Click
16 complement(1722161..1722835)  hypothetical protein; Pvag_1640  N/A  Click
17 1722999..1724168  PHAGE_Entero_PsP3: gp21; Pvag_1641; phage(gi41057373)  4e-174  Click
18 1724181..1725188  PHAGE_Entero_PsP3: gp22; Pvag_1642; phage(gi41057374)  1e-50  Click
19 1725542..1725823  hypothetical protein; Pvag_1643  N/A  Click
20 1726584..1726739  PHAGE_Pectob_ZF40: putative DNA polymerase; Pvag_1644; phage(gi422936677)  2e-10  Click
Region 3, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1763262..1764590)  PHAGE_Mycoba_Myrna: gp183; Pvag_1685; phage(gi203454746)  7e-10  Click
2 complement(1764719..1765576)  Bifunctional protein glk; Pvag_1686  N/A  Click
3 complement(1765951..1766475)  PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; Pvag_1687; phage(gi23505469)  4e-20  Click
4 complement(1766472..1767878)  PHAGE_Pseudo_Bf7: putative tail fiber protein; Pvag_1688; phage(gi374531639)  4e-05  Click
5 complement(1768449..1769651)  PHAGE_Pectob_ZF40: putative baseplate protein; Pvag_1689; phage(gi422936703)  5e-43  Click
6 complement(1769651..1770004)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p47; Pvag_1690; phage(gi31544050)  5e-14  Click
7 complement(1770001..1770657)  PHAGE_Haemop_Aaphi23: putative baseplate protein; Pvag_1691; phage(gi31544048)  1e-33  Click
8 complement(1770909..1771958)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p45; Pvag_1692; phage(gi31544047)  9e-26  Click
9 complement(1771964..1772293)  bacteriophage protein; Pvag_1693  N/A  Click
10 complement(1772294..1772842)  PHAGE_Psychr_pOW20_A: hypothetical protein; Pvag_1694; phage(gi472339841)  6e-08  Click
11 complement(1772842..1774908)  PHAGE_Haemop_Aaphi23: putative tail length tape measure protein; Pvag_1695; phage(gi31544043)  1e-09  Click
12 complement(1774898..1775050)  hypothetical protein; Pvag_1696  N/A  Click
13 complement(1775086..1775547)  bacteriophage protein; Pvag_1697  N/A  Click
14 complement(1775550..1775990)  PHAGE_Pseudo_vB_PaeM_C2_10_Ab1: hypothetical protein; Pvag_1698; phage(gi431809991)  1e-06  Click
15 complement(1776001..1777146)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p39; Pvag_1699; phage(gi31544040)  1e-41  Click
16 complement(1777150..1777686)  bacteriophage protein; Pvag_1700  N/A  Click
17 complement(1778394..1778870)  PHAGE_Entero_HK630: cell lysis protein Rz; Pvag_1701; phage(gi428782852)  1e-37  Click
18 complement(1778849..1779388)  PHAGE_Pectob_ZF40: putative lysis protein; Pvag_1702; phage(gi422936674)  7e-76  Click
19 complement(1780439..1780555)  hypothetical protein; Pvag_1703  N/A  Click
20 complement(1780642..1781175)  PHAGE_Entero_mEp390: late gene regulator Q; Pvag_1704; phage(gi428782710)  5e-40  Click
21 complement(1781568..1781729)  hypothetical protein; Pvag_1705  N/A  Click
22 complement(1782173..1783090)  PHAGE_Erwini_PEp14: putative phage O family protein; Pvag_1706; phage(gi374531901)  2e-45  Click
Region 4, total : 37 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2851992..2853833  PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; Pvag_2668; phage(gi356870821)  2e-36  Click
2 complement(2853914..2854432)  G/U mismatch-specific DNA glycosylase; Pvag_2669  N/A  Click
3 complement(2854429..2855076)  hypothetical protein; Pvag_2670  N/A  Click
4 2855152..2855943  short-chain dehydrogenase; Pvag_2671  N/A  Click
5 2856146..2856221  tRNA  N/A  Click
6 2856175..2856208  attL    GACTCATAATCGCTTGGTCGCTGGTTCAAACCCA  N/A  Click
7 complement(2856647..2857327)  PHAGE_Entero_2: P2 gpD-like tail protein; Pvag_2673; phage(gi169936019)  3e-98  Click
8 complement(2857360..2857746)  PHAGE_Entero_2: P2 gpD-like tail protein; Pvag_2674; phage(gi169936019)  1e-49  Click
9 complement(2857743..2858228)  PHAGE_Entero_2: P2 gpU-like tail protein; Pvag_2675; phage(gi169936020)  4e-67  Click
10 complement(2858225..2859286)  PHAGE_Entero_2: P2 gpT-like tail protein; Pvag_2676; phage(gi169936021)  4e-119  Click
11 complement(2859340..2861373)  PHAGE_Entero_2: P2 gpT-like tail protein; Pvag_2677; phage(gi169936021)  0.0  Click
12 complement(2861366..2861485)  PHAGE_Entero_2: P2 gpE-like protein; Pvag_2678; phage(gi169936022)  7e-11  Click
13 complement(2861500..2861808)  PHAGE_Entero_2: P2 gpE-like tail protein; Pvag_2679; phage(gi169936023)  5e-35  Click
14 complement(2861863..2862378)  PHAGE_Entero_2: P2 gpFII-like protein; Pvag_2680; phage(gi169936024)  3e-82  Click
15 complement(2862391..2863560)  PHAGE_Entero_2: P2 gpFI-like protein; Pvag_2681; phage(gi169936025)  0.0  Click
16 complement(2863606..2864229)  PHAGE_Entero_2: DNA-invertase; Pvag_2682; phage(gi169936026)  1e-73  Click
17 2864524..2864931  PHAGE_Klebsi_JD001: putative tail-fiber protein; Pvag_2683; phage(gi448245166)  7e-14  Click
18 2864931..2865323  PHAGE_Bacter_2: tail fiber; Pvag_2684; phage(gi212499733)  1e-14  Click
19 2866210..2868477  hypothetical protein; Pvag_2685  N/A  Click
20 complement(2868677..2869084)  PHAGE_Entero_2: P2 gpG-like protein; Pvag_2686; phage(gi169936028)  5e-14  Click
21 complement(2869085..2869804)  PHAGE_Entero_2: P2 gpJ-like baseplate assembly protein; Pvag_2687; phage(gi169936032)  3e-62  Click
22 complement(2869791..2870147)  PHAGE_Entero_2: P2 gpW-like baseplate protein; Pvag_2688; phage(gi169936033)  2e-41  Click
23 complement(2870144..2870722)  PHAGE_Entero_2: P2 gpV-like protein; Pvag_2689; phage(gi169936034)  1e-70  Click
24 complement(2870799..2871245)  PHAGE_Entero_2: P2 gpS-like tail completion protein; Pvag_2690; phage(gi169936035)  4e-52  Click
25 complement(2871238..2871669)  PHAGE_Entero_2: P2 gpR-like tail completion protein; Pvag_2691; phage(gi169936036)  4e-58  Click
26 complement(2871765..2872193)  PHAGE_Entero_2: P2 LysB-like protein; Pvag_2692; phage(gi169936038)  2e-37  Click
27 complement(2872190..2872597)  hypothetical protein; Pvag_2693  N/A  Click
28 complement(2872566..2873075)  PHAGE_Entero_2: endolysin; Pvag_2694; phage(gi169936041)  2e-70  Click
29 complement(2873056..2873268)  PHAGE_Entero_2: lysis protein; Pvag_2695; phage(gi169936042)  2e-20  Click
30 complement(2873272..2873475)  PHAGE_Entero_2: P2 gpX-like tail protein; Pvag_2696; phage(gi169936043)  7e-29  Click
31 complement(2873475..2873939)  PHAGE_Entero_2: P2 gpL-like protein; Pvag_2697; phage(gi169936044)  8e-61  Click
32 complement(2874224..2875225)  PHAGE_Entero_2: P2 gpN-like major capsid protein; Pvag_2698; phage(gi169936046)  3e-115  Click
33 complement(2875270..2875440)  hypothetical protein; Pvag_2699  N/A  Click
34 complement(2875531..2875758)  PHAGE_Entero_2: hypothetical protein STM2732.Fels2; Pvag_2700; phage(gi169936057)  4e-09  Click
35 complement(2875828..2876133)  PHAGE_Entero_2: hypothetical protein STM2733.Fels2; Pvag_2701; phage(gi169936058)  3e-26  Click
36 complement(2876322..2876831)  PHAGE_Entero_2: bacteriophage regulatory protein CII; Pvag_2702; phage(gi169936061)  1e-52  Click
37 2877818..2878831  PHAGE_Entero_2: P2 Int-like protein; Pvag_2703; phage(gi169936064)  1e-101  Click
38 2878951..2878984  attR    GACTCATAATCGCTTGGTCGCTGGTTCAAACCCA  N/A  Click
39 2880158..2880730  PHAGE_Entero_2: P2 gpP-like protein; Pvag_2704; phage(gi169936048)  7e-91  Click
40 2880730..2881761  PHAGE_Entero_2: P2 gpQ-like protein; Pvag_2705; phage(gi169936049)  2e-161  Click