Definition | Pantoea vagans C9-1 chromosome, complete genome. |
---|---|
Accession | NC_014562 |
Length | 4,024,986 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 28 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 989265..989276 | attL CTTCCCCAAAAT | N/A | Click |
2 | 989658..989669 | attL ACTTCAAGCTTA | N/A | Click |
3 | complement(989971..991116) | PHAGE_Entero_mEp235: integrase; Pvag_0941; phage(gi428781836) | 2e-57 | Click |
4 | complement(991368..992093) | PHAGE_Pseudo_JBD24: hypothetical protein; Pvag_0943; phage(gi448245062) | 8e-13 | Click |
5 | 993974..994462 | PHAGE_Entero_cdtI: hypothetical protein PcdtI_gp43; Pvag_0944; phage(gi148609425) | 2e-57 | Click |
6 | 994899..995846 | PHAGE_Entero_phiP27: hypothetical protein P27p17; Pvag_0945; phage(gi18249881) | 4e-36 | Click |
7 | 995859..997199 | PHAGE_Salmon_E1: phage-related DNA-binding protein; Pvag_0946; phage(gi170676297) | 5e-51 | Click |
8 | 997923..998909 | PHAGE_Burkho_KS5: gp44; Pvag_0947; phage(gi327198042) | 3e-07 | Click |
9 | 998917..1000251 | spermidine/putrescine import ATP-binding protein potA; Pvag_0948 | N/A | Click |
10 | 1001266..1002306 | PHAGE_Entero_cdtI: putative DNA methylase; Pvag_0949; phage(gi148609438) | 5e-158 | Click |
11 | 1002341..1002727 | PHAGE_Entero_mEp390: putative holin; Pvag_0950; phage(gi428782712) | 3e-17 | Click |
12 | 1002706..1003020 | PHAGE_Entero_mEp390: putative holin; Pvag_0951; phage(gi428782713) | 1e-14 | Click |
13 | 1003013..1003480 | PHAGE_Vibrio_vB_VchM_138: putative lysozyme; Pvag_0952; phage(gi422936605) | 1e-23 | Click |
14 | 1003480..1003734 | PHAGE_Entero_mEp390: hypothetical protein; Pvag_0953; phage(gi428782715) | 7e-10 | Click |
15 | 1005357..1005800 | PHAGE_Erwini_vB_EamM_Y2: gp84; Pvag_0954; phage(gi422934774) | 1e-19 | Click |
16 | 1006061..1006690 | PHAGE_Cronob_ENT47670: putative transposase; Pvag_0955; phage(gi431810514) | 3e-87 | Click |
17 | 1006722..1007180 | PHAGE_Cronob_ENT47670: hypothetical protein; Pvag_0956; phage(gi431810521) | 6e-42 | Click |
18 | 1007322..1008125 | PHAGE_Salmon_vB_SosS_Oslo: terminase large subunit; Pvag_0957; phage(gi399528760) | 2e-151 | Click |
19 | 1008206..1009153 | PHAGE_Salmon_vB_SosS_Oslo: portal protein; Pvag_0958; phage(gi399528761) | 6e-108 | Click |
20 | 1009071..1010096 | PHAGE_Salmon_vB_SosS_Oslo: putative head morphogenesis protein; Pvag_0959; phage(gi399528762) | 3e-104 | Click |
21 | 1010223..1010621 | PHAGE_Cronob_ENT47670: hypothetical protein; Pvag_0960; phage(gi431810532) | 2e-36 | Click |
22 | 1010618..1011001 | PHAGE_Cronob_ENT47670: hypothetical protein; Pvag_0961; phage(gi431810530) | 3e-42 | Click |
23 | 1011062..1012342 | PHAGE_Cronob_ENT47670: putative tail protein; Pvag_0962; phage(gi431810495) | 3e-67 | Click |
24 | 1012398..1014830 | PHAGE_Xantho_vB_XveM_DIBBI: putative tail fiber protein/putative EPS depolymerase; Pvag_0963; phage(gi389060429) | 2e-88 | Click |
25 | 1015574..1015762 | hypothetical protein; Pvag_0964 | N/A | Click |
26 | 1017289..1018305 | hypothetical protein; Pvag_0965 | N/A | Click |
27 | complement(1018571..1019596) | hypothetical protein; Pvag_0966 | N/A | Click |
28 | complement(1020485..1021354) | hypothetical protein; Pvag_0967 | N/A | Click |
29 | 1022410..1022421 | attR ACTTCAAGCTTA | N/A | Click |
30 | 1022548..1023531 | PROPHAGE_Deinoc_R1: integrase/recombinase, putative; Pvag_0968; phage(gi15807824) | 3e-08 | Click |
31 | 1023533..1025650 | site-specific recombinase, phage integrase family; Pvag_0969 | N/A | Click |
32 | 1034533..1034544 | attR CTTCCCCAAAAT | N/A | Click |
Region 2, total : 20 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1710134..1711168) | PHAGE_Entero_PsP3: gp1; Pvag_1625; phage(gi41057353) | 5e-145 | Click |
2 | complement(1711168..1712931) | PHAGE_Entero_PsP3: gp3; Pvag_1626; phage(gi41057355) | 0.0 | Click |
3 | 1712995..1713387 | PHAGE_Entero_PsP3: gp5; Pvag_1627; phage(gi41057357) | 2e-44 | Click |
4 | 1713391..1713963 | PHAGE_Entero_PsP3: gp6; Pvag_1628; phage(gi41057358) | 3e-55 | Click |
5 | 1714025..1714447 | PHAGE_Erwini_ENT90: control of lysis protein; Pvag_1629; phage(gi431810965) | 4e-50 | Click |
6 | 1714549..1715016 | PHAGE_Entero_PsP3: gp13; Pvag_1630; phage(gi41057365) | 6e-42 | Click |
7 | 1715013..1715459 | PHAGE_Entero_PsP3: gp14; Pvag_1631; phage(gi41057366) | 4e-43 | Click |
8 | 1715568..1717127 | hypothetical protein; Pvag_1632 | N/A | Click |
9 | 1717571..1718155 | PHAGE_Entero_PsP3: gp15; Pvag_1633; phage(gi41057367) | 7e-61 | Click |
10 | 1718152..1718502 | PHAGE_Entero_PsP3: gp16; Pvag_1634; phage(gi41057368) | 3e-35 | Click |
11 | 1718507..1719415 | PHAGE_Entero_PsP3: gp17; Pvag_1635; phage(gi41057369) | 7e-122 | Click |
12 | 1719408..1720016 | PROPHAGE_Salmon_Ty2: putative phage tail protein; Pvag_1636; phage(gi29143753) | 2e-68 | Click |
13 | 1720013..1721059 | PHAGE_Erwini_ENT90: phage tail collar domain protein; Pvag_1637; phage(gi431810938) | 1e-80 | Click |
14 | 1721059..1721649 | PHAGE_Entero_HK106: tail fiber assembly protein; Pvag_1638; phage(gi428783304) | 1e-41 | Click |
15 | complement(1721703..1722143) | hypothetical protein; Pvag_1639 | N/A | Click |
16 | complement(1722161..1722835) | hypothetical protein; Pvag_1640 | N/A | Click |
17 | 1722999..1724168 | PHAGE_Entero_PsP3: gp21; Pvag_1641; phage(gi41057373) | 4e-174 | Click |
18 | 1724181..1725188 | PHAGE_Entero_PsP3: gp22; Pvag_1642; phage(gi41057374) | 1e-50 | Click |
19 | 1725542..1725823 | hypothetical protein; Pvag_1643 | N/A | Click |
20 | 1726584..1726739 | PHAGE_Pectob_ZF40: putative DNA polymerase; Pvag_1644; phage(gi422936677) | 2e-10 | Click |
Region 3, total : 22 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1763262..1764590) | PHAGE_Mycoba_Myrna: gp183; Pvag_1685; phage(gi203454746) | 7e-10 | Click |
2 | complement(1764719..1765576) | Bifunctional protein glk; Pvag_1686 | N/A | Click |
3 | complement(1765951..1766475) | PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; Pvag_1687; phage(gi23505469) | 4e-20 | Click |
4 | complement(1766472..1767878) | PHAGE_Pseudo_Bf7: putative tail fiber protein; Pvag_1688; phage(gi374531639) | 4e-05 | Click |
5 | complement(1768449..1769651) | PHAGE_Pectob_ZF40: putative baseplate protein; Pvag_1689; phage(gi422936703) | 5e-43 | Click |
6 | complement(1769651..1770004) | PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p47; Pvag_1690; phage(gi31544050) | 5e-14 | Click |
7 | complement(1770001..1770657) | PHAGE_Haemop_Aaphi23: putative baseplate protein; Pvag_1691; phage(gi31544048) | 1e-33 | Click |
8 | complement(1770909..1771958) | PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p45; Pvag_1692; phage(gi31544047) | 9e-26 | Click |
9 | complement(1771964..1772293) | bacteriophage protein; Pvag_1693 | N/A | Click |
10 | complement(1772294..1772842) | PHAGE_Psychr_pOW20_A: hypothetical protein; Pvag_1694; phage(gi472339841) | 6e-08 | Click |
11 | complement(1772842..1774908) | PHAGE_Haemop_Aaphi23: putative tail length tape measure protein; Pvag_1695; phage(gi31544043) | 1e-09 | Click |
12 | complement(1774898..1775050) | hypothetical protein; Pvag_1696 | N/A | Click |
13 | complement(1775086..1775547) | bacteriophage protein; Pvag_1697 | N/A | Click |
14 | complement(1775550..1775990) | PHAGE_Pseudo_vB_PaeM_C2_10_Ab1: hypothetical protein; Pvag_1698; phage(gi431809991) | 1e-06 | Click |
15 | complement(1776001..1777146) | PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p39; Pvag_1699; phage(gi31544040) | 1e-41 | Click |
16 | complement(1777150..1777686) | bacteriophage protein; Pvag_1700 | N/A | Click |
17 | complement(1778394..1778870) | PHAGE_Entero_HK630: cell lysis protein Rz; Pvag_1701; phage(gi428782852) | 1e-37 | Click |
18 | complement(1778849..1779388) | PHAGE_Pectob_ZF40: putative lysis protein; Pvag_1702; phage(gi422936674) | 7e-76 | Click |
19 | complement(1780439..1780555) | hypothetical protein; Pvag_1703 | N/A | Click |
20 | complement(1780642..1781175) | PHAGE_Entero_mEp390: late gene regulator Q; Pvag_1704; phage(gi428782710) | 5e-40 | Click |
21 | complement(1781568..1781729) | hypothetical protein; Pvag_1705 | N/A | Click |
22 | complement(1782173..1783090) | PHAGE_Erwini_PEp14: putative phage O family protein; Pvag_1706; phage(gi374531901) | 2e-45 | Click |
Region 4, total : 37 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2851992..2853833 | PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; Pvag_2668; phage(gi356870821) | 2e-36 | Click |
2 | complement(2853914..2854432) | G/U mismatch-specific DNA glycosylase; Pvag_2669 | N/A | Click |
3 | complement(2854429..2855076) | hypothetical protein; Pvag_2670 | N/A | Click |
4 | 2855152..2855943 | short-chain dehydrogenase; Pvag_2671 | N/A | Click |
5 | 2856146..2856221 | tRNA | N/A | Click |
6 | 2856175..2856208 | attL GACTCATAATCGCTTGGTCGCTGGTTCAAACCCA | N/A | Click |
7 | complement(2856647..2857327) | PHAGE_Entero_2: P2 gpD-like tail protein; Pvag_2673; phage(gi169936019) | 3e-98 | Click |
8 | complement(2857360..2857746) | PHAGE_Entero_2: P2 gpD-like tail protein; Pvag_2674; phage(gi169936019) | 1e-49 | Click |
9 | complement(2857743..2858228) | PHAGE_Entero_2: P2 gpU-like tail protein; Pvag_2675; phage(gi169936020) | 4e-67 | Click |
10 | complement(2858225..2859286) | PHAGE_Entero_2: P2 gpT-like tail protein; Pvag_2676; phage(gi169936021) | 4e-119 | Click |
11 | complement(2859340..2861373) | PHAGE_Entero_2: P2 gpT-like tail protein; Pvag_2677; phage(gi169936021) | 0.0 | Click |
12 | complement(2861366..2861485) | PHAGE_Entero_2: P2 gpE-like protein; Pvag_2678; phage(gi169936022) | 7e-11 | Click |
13 | complement(2861500..2861808) | PHAGE_Entero_2: P2 gpE-like tail protein; Pvag_2679; phage(gi169936023) | 5e-35 | Click |
14 | complement(2861863..2862378) | PHAGE_Entero_2: P2 gpFII-like protein; Pvag_2680; phage(gi169936024) | 3e-82 | Click |
15 | complement(2862391..2863560) | PHAGE_Entero_2: P2 gpFI-like protein; Pvag_2681; phage(gi169936025) | 0.0 | Click |
16 | complement(2863606..2864229) | PHAGE_Entero_2: DNA-invertase; Pvag_2682; phage(gi169936026) | 1e-73 | Click |
17 | 2864524..2864931 | PHAGE_Klebsi_JD001: putative tail-fiber protein; Pvag_2683; phage(gi448245166) | 7e-14 | Click |
18 | 2864931..2865323 | PHAGE_Bacter_2: tail fiber; Pvag_2684; phage(gi212499733) | 1e-14 | Click |
19 | 2866210..2868477 | hypothetical protein; Pvag_2685 | N/A | Click |
20 | complement(2868677..2869084) | PHAGE_Entero_2: P2 gpG-like protein; Pvag_2686; phage(gi169936028) | 5e-14 | Click |
21 | complement(2869085..2869804) | PHAGE_Entero_2: P2 gpJ-like baseplate assembly protein; Pvag_2687; phage(gi169936032) | 3e-62 | Click |
22 | complement(2869791..2870147) | PHAGE_Entero_2: P2 gpW-like baseplate protein; Pvag_2688; phage(gi169936033) | 2e-41 | Click |
23 | complement(2870144..2870722) | PHAGE_Entero_2: P2 gpV-like protein; Pvag_2689; phage(gi169936034) | 1e-70 | Click |
24 | complement(2870799..2871245) | PHAGE_Entero_2: P2 gpS-like tail completion protein; Pvag_2690; phage(gi169936035) | 4e-52 | Click |
25 | complement(2871238..2871669) | PHAGE_Entero_2: P2 gpR-like tail completion protein; Pvag_2691; phage(gi169936036) | 4e-58 | Click |
26 | complement(2871765..2872193) | PHAGE_Entero_2: P2 LysB-like protein; Pvag_2692; phage(gi169936038) | 2e-37 | Click |
27 | complement(2872190..2872597) | hypothetical protein; Pvag_2693 | N/A | Click |
28 | complement(2872566..2873075) | PHAGE_Entero_2: endolysin; Pvag_2694; phage(gi169936041) | 2e-70 | Click |
29 | complement(2873056..2873268) | PHAGE_Entero_2: lysis protein; Pvag_2695; phage(gi169936042) | 2e-20 | Click |
30 | complement(2873272..2873475) | PHAGE_Entero_2: P2 gpX-like tail protein; Pvag_2696; phage(gi169936043) | 7e-29 | Click |
31 | complement(2873475..2873939) | PHAGE_Entero_2: P2 gpL-like protein; Pvag_2697; phage(gi169936044) | 8e-61 | Click |
32 | complement(2874224..2875225) | PHAGE_Entero_2: P2 gpN-like major capsid protein; Pvag_2698; phage(gi169936046) | 3e-115 | Click |
33 | complement(2875270..2875440) | hypothetical protein; Pvag_2699 | N/A | Click |
34 | complement(2875531..2875758) | PHAGE_Entero_2: hypothetical protein STM2732.Fels2; Pvag_2700; phage(gi169936057) | 4e-09 | Click |
35 | complement(2875828..2876133) | PHAGE_Entero_2: hypothetical protein STM2733.Fels2; Pvag_2701; phage(gi169936058) | 3e-26 | Click |
36 | complement(2876322..2876831) | PHAGE_Entero_2: bacteriophage regulatory protein CII; Pvag_2702; phage(gi169936061) | 1e-52 | Click |
37 | 2877818..2878831 | PHAGE_Entero_2: P2 Int-like protein; Pvag_2703; phage(gi169936064) | 1e-101 | Click |
38 | 2878951..2878984 | attR GACTCATAATCGCTTGGTCGCTGGTTCAAACCCA | N/A | Click |
39 | 2880158..2880730 | PHAGE_Entero_2: P2 gpP-like protein; Pvag_2704; phage(gi169936048) | 7e-91 | Click |
40 | 2880730..2881761 | PHAGE_Entero_2: P2 gpQ-like protein; Pvag_2705; phage(gi169936049) | 2e-161 | Click |