Definition Lactobacillus plantarum subsp. plantarum ST-III chromosome, complete genome.
Accession NC_014554
Length 3,254,376
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 48 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1799567..1799580  attL    CTGTACTCTCCTTA  N/A  Click
2 complement(1800396..1800926)  PHAGE_Lactob_Sha1: hypothetical protein; LPST_C1664; phage(gi418489823)  3e-83  Click
3 complement(1800939..1801202)  PHAGE_Lactob_Sha1: phage-related holin; LPST_C1665; phage(gi418489822)  1e-42  Click
4 complement(1801202..1802374)  PHAGE_Lactob_Sha1: endolysin; LPST_C1666; phage(gi418489821)  0.0  Click
5 complement(1802386..1802745)  PHAGE_Lactob_Sha1: prophage Lp2 protein 53-like protein; LPST_C1667; phage(gi418489820)  2e-49  Click
6 complement(1802894..1803145)  PHAGE_Lactob_Sha1: hypothetical protein; LPST_C1668; phage(gi418489818)  1e-37  Click
7 complement(1803138..1805684)  PHAGE_Lactob_Sha1: tail fiber; LPST_C1669; phage(gi418489817)  0.0  Click
8 complement(1805701..1808115)  PHAGE_Lactob_Sha1: minor structural protein gp89-like protein; LPST_C1670; phage(gi418489816)  0.0  Click
9 complement(1808184..1809956)  PHAGE_Lactob_Sha1: minor structural protein gp75-like protein; LPST_C1671; phage(gi418489815)  0.0  Click
10 complement(1810031..1815061)  PHAGE_Strept_Sfi19: minor tail protein; LPST_C1672; phage(gi9632906)  0.0  Click
11 complement(1815093..1815251)  hypothetical protein; LPST_C1673  N/A  Click
12 complement(1815323..1815697)  hypothetical protein; LPST_C1674  N/A  Click
13 complement(1815774..1816427)  PHAGE_Lactob_phiAT3: putative major tail protein; LPST_C1675; phage(gi48697269)  5e-24  Click
14 complement(1816443..1816823)  PHAGE_Strept_Sfi21: putative tail component protein; LPST_C1676; phage(gi9632947)  2e-15  Click
15 complement(1816823..1817230)  PHAGE_Strept_DT1: putative tail component protein; LPST_C1677; phage(gi9632427)  4e-28  Click
16 complement(1817570..1817902)  PHAGE_Lactob_Sha1: phage protein DNA packaging protein; LPST_C1678; phage(gi418489807)  6e-50  Click
17 complement(1817975..1819207)  PHAGE_Lactob_Sha1: HK97 family phage major capsid protein; LPST_C1679; phage(gi418489806)  0.0  Click
18 complement(1819207..1819962)  PHAGE_Lactob_Sha1: protease subunit of ATP-dependent Clp protease; LPST_C1680; phage(gi418489805)  1e-132  Click
19 complement(1819940..1821133)  PHAGE_Lactob_Sha1: phage portal protein; LPST_C1681; phage(gi418489804)  0.0  Click
20 complement(1821136..1821330)  PHAGE_Lactob_Sha1: phage head-tail joining protein; LPST_C1682; phage(gi418489803)  6e-31  Click
21 complement(1821320..1823218)  PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; LPST_C1683; phage(gi418489802)  0.0  Click
22 complement(1823228..1823686)  PHAGE_Lactob_Sha1: P27 family phage terminase small subunit; LPST_C1684; phage(gi418489801)  9e-81  Click
23 complement(1823873..1824124)  hypothetical protein; LPST_C1685  N/A  Click
24 complement(1824142..1824411)  hypothetical protein; LPST_C1686  N/A  Click
25 complement(1824417..1824887)  PHAGE_Lactob_Sha1: restriction endonuclease; LPST_C1687; phage(gi418489800)  1e-84  Click
26 complement(1824898..1825068)  PHAGE_Lactob_Sha1: HNH nuclease; LPST_C1688; phage(gi418489799)  4e-26  Click
27 complement(1825228..1826016)  hypothetical protein; LPST_C1689  N/A  Click
28 complement(1826710..1827138)  PHAGE_Lactob_Sha1: phage transcriptional activator RinA; LPST_C1690; phage(gi418489798)  5e-66  Click
29 complement(1827413..1827721)  PHAGE_Lactob_Sha1: hypothetical protein; LPST_C1691; phage(gi418489790)  7e-51  Click
30 complement(1827857..1828642)  PHAGE_Lactob_Sha1: DNA replication protein; LPST_C1692; phage(gi418489789)  2e-146  Click
31 complement(1828642..1829439)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1448; LPST_C1693; phage(gi41179305)  4e-58  Click
32 complement(1829798..1829968)  hypothetical protein; LPST_C1694  N/A  Click
33 complement(1830090..1830242)  PHAGE_Lactob_Sha1: hypothetical protein; LPST_C1695; phage(gi418489841)  8e-09  Click
34 complement(1830254..1830454)  PHAGE_Lactob_Sha1: hypothetical protein; LPST_C1696; phage(gi418489840)  2e-28  Click
35 complement(1830718..1830921)  PHAGE_Lactob_Sha1: prophage Lp3 protein 4-like protein; LPST_C1697; phage(gi418489838)  1e-05  Click
36 complement(1831971..1832231)  hypothetical protein; LPST_C1698  N/A  Click
37 1832289..1832645  PHAGE_Staphy_phi7401PVL: hypothetical protein; LPST_C1699; phage(gi448244650)  4e-10  Click
38 complement(1832642..1832845)  hypothetical protein; LPST_C1700  N/A  Click
39 complement(1832856..1833608)  PHAGE_Lactob_Sha1: phage-related antirepressor; LPST_C1701; phage(gi418489833)  6e-60  Click
40 complement(1833621..1833836)  hypothetical protein; LPST_C1702  N/A  Click
41 1834093..1834419  PHAGE_Entero_phiFL3A: CI phage repressor protein; LPST_C1703; phage(gi281416216)  2e-18  Click
42 1834591..1834839  PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; LPST_C1704; phage(gi418489418)  3e-08  Click
43 1834902..1835780  PHAGE_Staphy_P954: hypothetical protein; LPST_C1705; phage(gi257136360)  1e-07  Click
44 1835795..1835995  PHAGE_Lactob_Sha1: hypothetical protein; LPST_C1706; phage(gi418489829)  4e-31  Click
45 1836031..1836150  hypothetical protein; LPST_C1707  N/A  Click
46 1836185..1836275  tRNA  N/A  Click
47 1836316..1836546  hypothetical protein; LPST_C1708  N/A  Click
48 1837035..1837211  hypothetical protein; LPST_C1709  N/A  Click
49 1837778..1838113  hypothetical protein; LPST_C1710  N/A  Click
50 1838281..1839444  PHAGE_Lactob_Sha1: phage integrase; LPST_C1711; phage(gi418489824)  1e-56  Click
51 1839527..1839540  attR    CTGTACTCTCCTTA  N/A  Click
Region 2, total : 58 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2139385..2139396  attL    TCACCCGCACGG  N/A  Click
2 2140547..2141449  PHAGE_Lactob_A2: hypothetical protein A2p19; LPST_C1993; phage(gi22296541)  4e-63  Click
3 complement(2142373..2142756)  PHAGE_Staphy_IPLA88: putative holin; LPST_C1994; phage(gi215401230)  4e-05  Click
4 complement(2142743..2143039)  prophage Lp1 protein 59; LPST_C1995  N/A  Click
5 complement(2143040..2144155)  PHAGE_Lactob_Lj965: putative lysin; LPST_C1996; phage(gi41179263)  2e-24  Click
6 complement(2144334..2144768)  hypothetical protein; LPST_C1997  N/A  Click
7 complement(2144771..2145220)  PHAGE_Strept_6: hypothetical protein SpyM3_1416; LPST_C1998; phage(gi28876446)  3e-07  Click
8 complement(2145227..2150392)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0324; LPST_C1999; phage(gi41179262)  6e-168  Click
9 complement(2150407..2150769)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0323; LPST_C2000; phage(gi41179261)  1e-32  Click
10 complement(2150783..2156614)  PHAGE_Lactob_Lj965: putative putative minor tail protein; LPST_C2001; phage(gi41179260)  0.0  Click
11 complement(2156630..2156833)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0321; LPST_C2002; phage(gi41179259)  1e-16  Click
12 complement(2157001..2157399)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0320; LPST_C2003; phage(gi41179250)  2e-39  Click
13 complement(2157499..2157969)  PHAGE_Lactob_Lj965: putative major tail protein; LPST_C2004; phage(gi41179249)  6e-49  Click
14 complement(2157984..2158349)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0318; LPST_C2005; phage(gi41179248)  2e-32  Click
15 complement(2158349..2158900)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0317; LPST_C2006; phage(gi41179258)  4e-55  Click
16 complement(2158902..2159249)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0316; LPST_C2007; phage(gi41179247)  1e-33  Click
17 complement(2159249..2159581)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0315; LPST_C2008; phage(gi41179246)  1e-12  Click
18 complement(2159593..2159769)  conjugal transfer protein; LPST_C2009  N/A  Click
19 complement(2159782..2160804)  PHAGE_Lactob_Lj965: putative major head protein; LPST_C2010; phage(gi41179245)  4e-95  Click
20 complement(2160824..2161171)  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0313; LPST_C2011; phage(gi41179244)  2e-22  Click
21 complement(2161186..2161863)  PHAGE_Lactob_Lj965: putative scaffold protein; LPST_C2012; phage(gi41179243)  9e-27  Click
22 complement(2162036..2162242)  hypothetical protein; LPST_C2013  N/A  Click
23 complement(2162294..2162494)  hypothetical protein; LPST_C2014  N/A  Click
24 complement(2162547..2164232)  PHAGE_Lactob_Lj965: putative minor head protein; LPST_C2015; phage(gi41179242)  2e-92  Click
25 complement(2164249..2164371)  hypothetical protein; LPST_C2016  N/A  Click
26 complement(2164379..2164636)  PHAGE_Entero_phiFL3A: ribosomal protein; LPST_C2017; phage(gi281416258)  3e-10  Click
27 complement(2164605..2166113)  PHAGE_Lactob_Lj965: putative portal protein; LPST_C2018; phage(gi41179240)  2e-123  Click
28 complement(2167353..2167880)  PHAGE_Lactob_phig1e: putative terminase small subunit; LPST_C2019; phage(gi23455798)  1e-63  Click
29 complement(2168114..2168320)  PHAGE_Lactob_Sha1: HNH nuclease; LPST_C2020; phage(gi418489799)  2e-08  Click
30 2168448..2169224  hypothetical protein; LPST_C2021  N/A  Click
31 complement(2169721..2169888)  hypothetical protein; LPST_C2022  N/A  Click
32 complement(2169917..2169989)  tRNA  N/A  Click
33 complement(2170112..2170573)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep41; LPST_C2024; phage(gi23455797)  2e-22  Click
34 complement(2170784..2171164)  PHAGE_Lister_A118: gp63; LPST_C2025; phage(gi16798850)  4e-29  Click
35 complement(2171161..2171679)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep52; LPST_C2026; phage(gi23455787)  3e-56  Click
36 complement(2171676..2172206)  PHAGE_Mycoba_LeBron: gp117; LPST_C2027; phage(gi304361052)  1e-07  Click
37 complement(2172203..2172490)  prophage Lp2 protein 21; LPST_C2028  N/A  Click
38 complement(2172487..2173353)  PHAGE_Lactob_phig1e: hypothetical protein phig1ep54; LPST_C2029; phage(gi254854754)  2e-30  Click
39 complement(2173474..2174226)  PHAGE_Lactob_LF1: hypothetical protein; LPST_C2030; phage(gi418489429)  4e-59  Click
40 complement(2174258..2175157)  PHAGE_Lactob_LF1: RecT protein; LPST_C2031; phage(gi418489428)  6e-70  Click
41 complement(2175154..2175591)  prophage Lp1 protein 17; LPST_C2032  N/A  Click
42 complement(2175673..2175843)  hypothetical protein; LPST_C2033  N/A  Click
43 complement(2175911..2176423)  prophage Lp2 protein 13; LPST_C2034  N/A  Click
44 complement(2176491..2176796)  prophage Lp2 protein 12; LPST_C2035  N/A  Click
45 complement(2176808..2176978)  prophage Lp2 protein 11; LPST_C2036  N/A  Click
46 complement(2177137..2177337)  PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; LPST_C2037; phage(gi397912660)  2e-06  Click
47 2177484..2177720  prophage Lp1 protein 11; LPST_C2038  N/A  Click
48 2177758..2178072  prophage Lp1 protein 10; LPST_C2039  N/A  Click
49 2178529..2179032  PHAGE_Bacill_1: Immunity repressor protein; LPST_C2040; phage(gi155042959)  4e-18  Click
50 2179047..2179469  PHAGE_Bacill_BCJA1c: hypothetical protein BCBBV1cgp4; LPST_C2041; phage(gi56694873)  2e-13  Click
51 2179576..2180295  PHAGE_Entero_mEp460: side tail fiber protein; LPST_C2042; phage(gi428782336)  1e-10  Click
52 2180325..2180416  tRNA  N/A  Click
53 2180532..2180623  tRNA  N/A  Click
54 2181183..2182067  PHAGE_Bovine_4: glycoprotein gp80; LPST_C2043; phage(gi13095628)  8e-14  Click
55 2182094..2182657  PHAGE_Human_6B: major immediate-early protein; LPST_C2044; phage(gi9633155)  4e-08  Click
56 2182699..2182784  tRNA  N/A  Click
57 2183176..2183246  tRNA  N/A  Click
58 2183822..2184616  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0291; LPST_C2045; phage(gi41179221)  2e-33  Click
59 2184786..2185907  PHAGE_Lactoc_bIL309: integrase; LPST_C2046; phage(gi13095806)  4e-45  Click
60 complement(2186136..2186208)  tRNA  N/A  Click
61 2186136..2186147  attR    TCACCCGCACGG  N/A  Click
62 complement(2186258..2186464)  prophage Lp3 protein 24; LPST_C2047  N/A  Click
63 2186599..2186674  tRNA  N/A  Click
64 2186877..2187110  hypothetical protein; LPST_C2048  N/A  Click
65 2187135..2187407  hypothetical protein; LPST_C2049  N/A  Click
66 complement(2187456..2187941)  transcription regulator (putative); LPST_C2050  N/A  Click
67 complement(2187996..2189972)  PHAGE_Human__8: LANA; LPST_C2051; phage(gi139472804)  4e-08  Click