| Definition | Dickeya dadantii 3937 chromosome, complete genome. |
|---|---|
| Accession | NC_014500 |
| Length | 4,922,802 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 17 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(182150..183523) | PHAGE_Ectoca_1: EsV-1-65; Dda3937_03052; phage(gi13242537) | 4e-08 | Click |
| 2 | complement(183540..184238) | PHAGE_Feldma_virus: putative sensor histidine kinase; Dda3937_03053; phage(gi197322366) | 2e-08 | Click |
| 3 | 184449..185009 | hypothetical protein; Dda3937_03054 | N/A | Click |
| 4 | complement(185220..185459) | hypothetical protein; Dda3937_03055 | N/A | Click |
| 5 | 185989..187344 | PHAGE_Entero_2: P2 gpH-like protein; Dda3937_03056; phage(gi169936030) | 6e-54 | Click |
| 6 | 187676..188968 | PHAGE_Entero_2: P2 gpH-like protein; Dda3937_03057; phage(gi169936030) | 6e-69 | Click |
| 7 | 188977..189354 | PHAGE_Synech_S_CBS4: tail fiber protein; Dda3937_03058; phage(gi374531791) | 4e-11 | Click |
| 8 | 189330..190790 | PHAGE_Entero_2: P2 gpH-like protein; Dda3937_04432; phage(gi169936030) | 3e-70 | Click |
| 9 | 190787..191410 | PHAGE_Entero_HK630: tail fiber assembly protein; Dda3937_04433; phage(gi428782810) | 8e-30 | Click |
| 10 | 191655..193073 | PHAGE_Entero_2: P2 gpH-like protein; Dda3937_04434; phage(gi169936030) | 1e-68 | Click |
| 11 | 193070..193465 | PHAGE_Entero_2: P2 gpG-like protein; Dda3937_03863; phage(gi169936029) | 1e-09 | Click |
| 12 | complement(193462..193971) | putative MutT/nudix-family hydrolase; Dda3937_03864 | N/A | Click |
| 13 | 194129..194599 | PHAGE_Strept_R4: putative DNA binding protein, XRE family; Dda3937_03865; phage(gi414090036) | 3e-05 | Click |
| 14 | 194729..195631 | zinc transporter; Dda3937_03866 | N/A | Click |
| 15 | 195878..196840 | PHAGE_Ostreo_OlV5: 6-phosphofructokinase; Dda3937_03867; phage(gi472341206) | 4e-17 | Click |
| 16 | 197176..198060 | PHAGE_Parame_NY2A: hypothetical protein NY2A_B116R; Dda3937_03868; phage(gi157952420) | 7e-81 | Click |
| 17 | 198061..199164 | PHAGE_Acanth_1: hypothetical protein ATCV1_Z806R; Dda3937_03869; phage(gi155371753) | 4e-97 | Click |
Region 2, total : 36 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 915372..915402 | attL GGGAGTTGAACCCGCGTCCGAAATTCCTACA | N/A | Click |
| 2 | complement(915452..916543) | PHAGE_Salmon_RE_2010: integrase; Dda3937_01762; phage(gi418489683) | 2e-150 | Click |
| 3 | complement(916651..917031) | PHAGE_Lactob_Lj965: hypothetical protein Ljo_0305; Dda3937_01763; phage(gi41179237) | 1e-31 | Click |
| 4 | complement(917000..918097) | PHAGE_Lactob_Lj965: hypothetical protein Ljo_0304; Dda3937_01764; phage(gi41179236) | 7e-66 | Click |
| 5 | complement(918861..920054) | PHAGE_Entero_PsP3: CI; Dda3937_01765; phage(gi41057393) | 3e-37 | Click |
| 6 | 920173..920394 | hypothetical protein; Dda3937_01766 | N/A | Click |
| 7 | 920427..920936 | PHAGE_Salmon_RE_2010: regulatory protein; Dda3937_01767; phage(gi418489686) | 4e-51 | Click |
| 8 | 920967..921188 | hypothetical protein; Dda3937_01768 | N/A | Click |
| 9 | 921201..921530 | hypothetical protein; Dda3937_01769 | N/A | Click |
| 10 | 921601..921828 | PHAGE_Erwini_ENT90: putative prophage protein; Dda3937_04480; phage(gi431810987) | 4e-10 | Click |
| 11 | 921828..922151 | hypothetical protein; Dda3937_01770 | N/A | Click |
| 12 | 922148..924190 | PHAGE_Vibrio_kappa: putative replication protein; Dda3937_01771; phage(gi165970249) | 6e-106 | Click |
| 13 | complement(924557..925132) | cell filamentation protein Fic; Dda3937_01772 | N/A | Click |
| 14 | complement(926246..926566) | PHAGE_Vibrio_kappa: hypothetical zinc-finger protein; Dda3937_02576; phage(gi165970253) | 3e-20 | Click |
| 15 | complement(926566..927615) | PHAGE_Vibrio_kappa: hypothetical pbsx family phage portal protein; Dda3937_02575; phage(gi165970255) | 4e-82 | Click |
| 16 | complement(927591..929366) | PHAGE_Vibrio_kappa: putative terminase ATPase subunit; Dda3937_02574; phage(gi165970256) | 0.0 | Click |
| 17 | 929517..930359 | PHAGE_Vibrio_kappa: putative capsid scaffolding protein; Dda3937_02573; phage(gi165970257) | 6e-32 | Click |
| 18 | 930369..931445 | PHAGE_Vibrio_kappa: putative major capsid protein; Dda3937_02572; phage(gi165970258) | 9e-87 | Click |
| 19 | 931449..932150 | PHAGE_Vibrio_kappa: putative terminase endonuclease subunit; Dda3937_02571; phage(gi165970259) | 5e-42 | Click |
| 20 | 932196..932699 | PHAGE_Vibrio_kappa: putative head completion protein; Dda3937_02570; phage(gi165970260) | 3e-26 | Click |
| 21 | 932696..933193 | PHAGE_Vibrio_kappa: hypothetical protein KP27; Dda3937_02569; phage(gi165970261) | 8e-09 | Click |
| 22 | 933190..933894 | PHAGE_Vibrio_kappa: putative tail completion protein; Dda3937_02568; phage(gi165970262) | 2e-05 | Click |
| 23 | 933897..935012 | PHAGE_Vibrio_kappa: putative tail sheath protein; Dda3937_02567; phage(gi165970264) | 2e-75 | Click |
| 24 | 935009..935464 | PHAGE_Vibrio_kappa: putative tail tube protein; Dda3937_02566; phage(gi165970265) | 4e-31 | Click |
| 25 | 935473..935778 | PHAGE_Burkho_KS9: holin gp22; Dda3937_02565; phage(gi255033753) | 3e-20 | Click |
| 26 | 935753..936106 | PHAGE_Pseudo_PaP2: hypothetical protein PaP2_gp17; Dda3937_02564; phage(gi48697087) | 2e-27 | Click |
| 27 | 936103..936462 | PHAGE_Erwini_phiEa104: hypothetical protein; Dda3937_02563; phage(gi327198401) | 4e-09 | Click |
| 28 | 936631..936852 | PHAGE_Vibrio_kappa: hypothetical protein KP36; Dda3937_02562; phage(gi165970270) | 7e-05 | Click |
| 29 | 937040..939004 | PHAGE_Vibrio_kappa: putative tail length determinator; Dda3937_02561; phage(gi165970271) | 1e-75 | Click |
| 30 | 938986..939333 | PHAGE_Vibrio_kappa: hypothetical protein KP38; Dda3937_02560; phage(gi165970272) | 8e-20 | Click |
| 31 | 939330..940514 | PHAGE_Vibrio_kappa: hypothetical protein KP39; Dda3937_02559; phage(gi165970273) | 2e-82 | Click |
| 32 | 940507..941139 | PHAGE_Vibrio_kappa: hypothetical protein KP40; Dda3937_02558; phage(gi165970274) | 4e-39 | Click |
| 33 | 941148..942569 | PHAGE_Vibrio_kappa: putative tail fiber protein; Dda3937_02557; phage(gi165970275) | 5e-44 | Click |
| 34 | 942569..943189 | PHAGE_Entero_HK106: tail fiber assembly protein; Dda3937_02556; phage(gi428783304) | 4e-37 | Click |
| 35 | 943186..943911 | PHAGE_Vibrio_kappa: hypothetical protein KP43; Dda3937_02555; phage(gi165970277) | 1e-12 | Click |
| 36 | 943883..944410 | PHAGE_Vibrio_kappa: hypothetical protein KP44; Dda3937_02554; phage(gi165970278) | 3e-22 | Click |
| 37 | 944414..946066 | PHAGE_Vibrio_kappa: hypothetical protein KP45; Dda3937_02553; phage(gi165970279) | 1e-95 | Click |
| 38 | 947293..947323 | attR GGGAGTTGAACCCGCGTCCGAAATTCCTACA | N/A | Click |
Region 3, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 976922..977803 | PHAGE_Lactoc_P087: putative cysteine synthase; Dda3937_01414; phage(gi229605000) | 1e-49 | Click |
| 2 | 977970..977981 | attL AACAGATTAAGC | N/A | Click |
| 3 | 978021..978164 | PROPHAGE_Escher_CFT073: prophage P4 integrase; Dda3937_01415; phage(gi26251024) | 2e-07 | Click |
| 4 | 978492..978971 | secreted protein Hcp; Dda3937_01416 | N/A | Click |
| 5 | 978973..979806 | hypothetical protein; Dda3937_01417 | N/A | Click |
| 6 | complement(979845..980234) | hypothetical protein; Dda3937_01418 | N/A | Click |
| 7 | complement(980802..982748) | PHAGE_Plankt_PaV_LD: ABC transporter; Dda3937_01419; phage(gi371496158) | 1e-39 | Click |
| 8 | complement(982752..984017) | PHAGE_Lactob_Nu: putative tape measure protein; Dda3937_01420; phage(gi78000025) | 3e-06 | Click |
| 9 | 984197..984877 | PHAGE_Feldma_virus: putative sensor histidine kinase; Dda3937_01421; phage(gi197322366) | 1e-04 | Click |
| 10 | 984880..986283 | PHAGE_Ectoca_1: EsV-1-65; Dda3937_01422; phage(gi13242537) | 6e-09 | Click |
| 11 | 992959..992970 | attR AACAGATTAAGC | N/A | Click |
Region 4, total : 12 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(1901087..1902190) | PHAGE_Amsact_: similar to translation elongation factor eEF-3; Dda3937_03605; phage(gi9964552) | 8e-06 | Click |
| 2 | 1902426..1902707 | hypothetical protein; Dda3937_04537 | N/A | Click |
| 3 | complement(1902804..1903211) | DNA-binding protein H-NS; Dda3937_00054 | N/A | Click |
| 4 | complement(1903271..1903516) | hypothetical protein; Dda3937_00053 | N/A | Click |
| 5 | complement(1903506..1903814) | PHAGE_Bacill_phi105: immunity repressor; Dda3937_00052; phage(gi22855027) | 5e-06 | Click |
| 6 | complement(1903913..1904722) | PROPHAGE_Escher_CFT073: transposase insF; Dda3937_00051; phage(gi26250329) | 3e-82 | Click |
| 7 | complement(1904764..1905048) | PROPHAGE_Xantho_33913: ISxac3 transposase; Dda3937_00050; phage(gi21231087) | 4e-21 | Click |
| 8 | complement(1905443..1905658) | PROPHAGE_Shewan_MR-1: ISSod4, transposase; Dda3937_00049; phage(gi24373869) | 1e-19 | Click |
| 9 | complement(1905537..1905716) | hcp; Dda3937_00048 | N/A | Click |
| 10 | complement(1906252..1906327) | tRNA | N/A | Click |
| 11 | complement(1906437..1907228) | hypothetical protein; Dda3937_04538 | N/A | Click |
| 12 | 1907323..1907412 | tRNA | N/A | Click |
| 13 | 1907878..1908189 | PHAGE_Entero_2008: putative prophage structural protein; Dda3937_03733; phage(gi209427781) | 7e-11 | Click |
| 14 | 1908280..1910478 | PHAGE_Salmon_SSU5: putative phage tail fiber protein; Dda3937_03734; phage(gi410491431) | 2e-14 | Click |
Region 5, total : 10 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(1988302..1989999) | PHAGE_Bacill_36: virion structural protein; Dda3937_02888; phage(gi156564144) | 8e-06 | Click |
| 2 | complement(1990238..1990960) | PHAGE_Plankt_PaV_LD: ABC transporter; Dda3937_02887; phage(gi371496158) | 7e-38 | Click |
| 3 | complement(1990957..1991616) | glutamine ABC transporter membrane protein; Dda3937_02886 | N/A | Click |
| 4 | complement(1991718..1992464) | PHAGE_Cafete_BV_PW1: putative ABC-type amino acid transporter; Dda3937_02885; phage(gi310831221) | 8e-08 | Click |
| 5 | 1992455..1992706 | hypothetical protein; Dda3937_04541 | N/A | Click |
| 6 | complement(1992962..1993465) | PHAGE_Campyl_CP21: putative non-specific DNA-binding protein Dps; Dda3937_02884; phage(gi422935345) | 1e-05 | Click |
| 7 | complement(1993631..1993864) | hypothetical protein; Dda3937_02883 | N/A | Click |
| 8 | complement(1993932..1994816) | threonine and homoserine efflux system; Dda3937_02882 | N/A | Click |
| 9 | 1995187..1995702 | PHAGE_Salmon_1: putative Lom-like outer membrane protein; Dda3937_02881; phage(gi169257198) | 2e-23 | Click |
| 10 | 1995837..1997171 | PROPHAGE_Shewan_MR-1: ISSod7, transposase; Dda3937_02880; phage(gi24375048) | 3e-72 | Click |
Region 6, total : 11 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2024025..2024036 | attL GGTTTATTTTTT | N/A | Click |
| 2 | complement(2037269..2038963) | PHAGE_Pectob_ZF40: putative tail-fiber/lysozyme protein; Dda3937_02200; phage(gi422936697) | 4e-153 | Click |
| 3 | complement(2039288..2039524) | hypothetical protein; Dda3937_02199 | N/A | Click |
| 4 | complement(2039592..2042360) | PHAGE_Entero_P4: DNA primase; Dda3937_02198; phage(gi9627512) | 3e-42 | Click |
| 5 | complement(2042299..2042928) | PHAGE_Entero_phiP27: hypothetical protein P27p06; Dda3937_02197; phage(gi18249870) | 5e-15 | Click |
| 6 | complement(2042925..2043143) | PHAGE_Salmon_1: hypothetical protein STM0898.2n.Fels1; Dda3937_02196; phage(gi169257165) | 3e-12 | Click |
| 7 | complement(2043302..2044042) | PHAGE_Entero_P4: putative CI repressor; Dda3937_02195; phage(gi9627516) | 1e-05 | Click |
| 8 | complement(2044035..2044832) | PHAGE_Stx2_c_II: putative antirepressor protein AntB; Dda3937_02194; phage(gi302393111) | 2e-22 | Click |
| 9 | complement(2044847..2045149) | hypothetical protein; Dda3937_02193 | N/A | Click |
| 10 | complement(2045295..2045513) | hypothetical protein; Dda3937_02192 | N/A | Click |
| 11 | complement(2045613..2046425) | hypothetical protein; Dda3937_02191 | N/A | Click |
| 12 | 2046409..2046420 | attR GGTTTATTTTTT | N/A | Click |
| 13 | complement(2046545..2047795) | PHAGE_Entero_P4: integrase; Dda3937_02190; phage(gi9627511) | 5e-71 | Click |
Region 7, total : 56 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2698473..2699531) | PHAGE_Salmon_ST160: regulatory protein; Dda3937_04336; phage(gi318065923) | 6e-19 | Click |
| 2 | complement(2699974..2700351) | PHAGE_Entero_P1: Doc; Dda3937_03800; phage(gi46401725) | 5e-28 | Click |
| 3 | complement(2700348..2700596) | PHAGE_Entero_P1: Phd; Dda3937_03799; phage(gi46401724) | 1e-08 | Click |
| 4 | complement(2700708..2701493) | PROPHAGE_Escher_MG1655: IS150 transposase B; Dda3937_03798; phage(gi16131429) | 1e-97 | Click |
| 5 | complement(2701547..2702068) | PROPHAGE_Escher_MG1655: IS150 transposase A; Dda3937_03797; phage(gi16131428) | 1e-25 | Click |
| 6 | complement(2702157..2703305) | alcohol dehydrogenase; Dda3937_03796 | N/A | Click |
| 7 | 2703586..2704146 | PHAGE_Entero_vB_KleM_RaK2: putative MutT/NUDIX hydrolase family protein; Dda3937_03795; phage(gi422936956) | 3e-05 | Click |
| 8 | complement(2704218..2704895) | nitrate reductase 1, gamma (cytochrome b(NR)) subunit; Dda3937_03794 | N/A | Click |
| 9 | complement(2704895..2705614) | molybdenum-cofactor-assembly chaperone subunit (subunit delta) of nitrate reductase 1; Dda3937_03793 | N/A | Click |
| 10 | complement(2705611..2707173) | nitrate reductase 1, beta (Fe-S) subunit; Dda3937_03792 | N/A | Click |
| 11 | complement(2707173..2710943) | nitrate reductase 1, subunit alpha; Dda3937_03791 | N/A | Click |
| 12 | complement(2711272..2712162) | PHAGE_Burkho_phi1026b: gp58; Dda3937_03790; phage(gi38707948) | 1e-08 | Click |
| 13 | 2712267..2713286 | metallo-beta-lactamase superfamily protein; Dda3937_03789 | N/A | Click |
| 14 | complement(2713378..2714769) | nitrate/nitrite transporter; Dda3937_03788 | N/A | Click |
| 15 | 2715190..2717001 | sensory histidine kinase in two-component regulatory system with NarL; Dda3937_03787 | N/A | Click |
| 16 | 2716994..2717641 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ); Dda3937_03786 | N/A | Click |
| 17 | 2717901..2719169 | PHAGE_Escher_TL_2011b: hypothetical protein; Dda3937_03785; phage(gi418487678) | 7e-07 | Click |
| 18 | 2719391..2720446 | peptide chain release factor RF-3; Dda3937_03784 | N/A | Click |
| 19 | complement(2720596..2722617) | PROPHAGE_Escher_MG1655: carboxy-terminal protease for penicillin-binding protein 3; Dda3937_03783; phage(gi16129784) | 0.0 | Click |
| 20 | complement(2722637..2723368) | PHAGE_Sodali_phiSG1: ProP protein; Dda3937_03782; phage(gi89886011) | 2e-09 | Click |
| 21 | complement(2723453..2723959) | hypothetical protein; Dda3937_03781 | N/A | Click |
| 22 | 2724177..2725508 | hypothetical protein; Dda3937_04337 | N/A | Click |
| 23 | 2725525..2728155 | hypothetical protein; Dda3937_04338 | N/A | Click |
| 24 | 2728265..2729713 | Ribosomal RNA small subunit methyltransferase F; Dda3937_03780 | N/A | Click |
| 25 | 2730021..2730272 | hypothetical protein; Dda3937_03779 | N/A | Click |
| 26 | complement(2730482..2732503) | PHAGE_Strept_Sfi11: putative minor tail protein; Dda3937_03778; phage(gi9635024) | 1e-05 | Click |
| 27 | complement(2733074..2733943) | PHAGE_Entero_PsP3: CI; Dda3937_03777; phage(gi41057393) | 3e-86 | Click |
| 28 | 2734041..2734511 | hypothetical protein; Dda3937_04604 | N/A | Click |
| 29 | 2734655..2735056 | PHAGE_Yersin_413C: gpB; Dda3937_03776; phage(gi30065737) | 9e-27 | Click |
| 30 | 2735053..2735391 | hypothetical protein; Dda3937_03775 | N/A | Click |
| 31 | 2735391..2735615 | PHAGE_Yersin_413C: hypothetical protein L-413Cp36; Dda3937_03774; phage(gi30065740) | 6e-15 | Click |
| 32 | 2735712..2737838 | PHAGE_Yersin_413C: gpA; Dda3937_04339; phage(gi30065742) | 2e-177 | Click |
| 33 | 2737902..2738123 | hypothetical protein; Dda3937_03773 | N/A | Click |
| 34 | 2738717..2738920 | PHAGE_Yersin_413C: gpX; Dda3937_03772; phage(gi30065711) | 2e-20 | Click |
| 35 | 2738996..2739457 | PHAGE_Yersin_413C: gpR; Dda3937_03771; phage(gi30065716) | 7e-30 | Click |
| 36 | 2739786..2740547 | Clavaminate synthase 1; Dda3937_03770 | N/A | Click |
| 37 | 2740613..2741335 | PHAGE_Yersin_413C: gpV; Dda3937_04605; phage(gi30065718) | 1e-79 | Click |
| 38 | 2741332..2741682 | PHAGE_Yersin_413C: gpW; Dda3937_00029; phage(gi30065719) | 7e-35 | Click |
| 39 | 2741687..2742595 | PHAGE_Yersin_413C: gpJ; Dda3937_00030; phage(gi30065720) | 2e-123 | Click |
| 40 | 2742588..2743199 | PHAGE_Entero_2: P2 gpI-like baseplate assembly protein; Dda3937_00031; phage(gi169936031) | 2e-73 | Click |
| 41 | 2743555..2744760 | PHAGE_Erwini_ENT90: phage tail collar domain protein; Dda3937_04606; phage(gi431810938) | 6e-88 | Click |
| 42 | 2744946..2746301 | hypothetical protein; Dda3937_03806 | N/A | Click |
| 43 | 2746268..2746498 | hypothetical protein; Dda3937_03805 | N/A | Click |
| 44 | 2746476..2747822 | 4-hydroxybenzoate transporter; Dda3937_03804 | N/A | Click |
| 45 | 2747899..2748198 | hypothetical protein; Dda3937_04607 | N/A | Click |
| 46 | complement(2748257..2748823) | hypothetical protein; Dda3937_03803 | N/A | Click |
| 47 | 2749532..2750101 | PHAGE_Entero_P1: Cin; Dda3937_03807; phage(gi46401653) | 4e-64 | Click |
| 48 | 2750273..2750965 | PROPHAGE_Salmon_Ty2: variable tail fiber protein; Dda3937_03808; phage(gi29143754) | 3e-29 | Click |
| 49 | 2750965..2751579 | PHAGE_Entero_HK106: tail fiber assembly protein; Dda3937_03809; phage(gi428783304) | 1e-34 | Click |
| 50 | 2751803..2752972 | PHAGE_Yersin_413C: gpFI; Dda3937_03810; phage(gi30065725) | 0.0 | Click |
| 51 | 2752987..2753505 | PHAGE_Yersin_413C: FII; Dda3937_03811; phage(gi30065726) | 4e-69 | Click |
| 52 | 2753566..2753856 | PHAGE_Yersin_413C: gpE; Dda3937_03812; phage(gi30065727) | 2e-25 | Click |
| 53 | 2753889..2754008 | PHAGE_Yersin_413C: gpE+E'; Dda3937_03813; phage(gi30065728) | 4e-11 | Click |
| 54 | 2753989..2755092 | hypothetical protein; Dda3937_03814 | N/A | Click |
| 55 | 2755104..2755598 | PHAGE_Yersin_413C: gpU; Dda3937_03815; phage(gi30065730) | 3e-41 | Click |
| 56 | 2755595..2756773 | PHAGE_Yersin_413C: gpD; Dda3937_03816; phage(gi30065731) | 2e-84 | Click |