Definition Clostridium saccharolyticum WM1 chromosome, complete genome.
Accession NC_014376
Length 4,662,871
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 622063..622989  PHAGE_Salmon_ST160: GtrB; Closa_0551; phage(gi318065903)  2e-40  Click
2 623003..623542  PHAGE_Lactoc_bIL311: Orf17; Closa_0552; phage(gi13095675)  2e-06  Click
3 623577..624680  PHAGE_Bathyc_BpV1: hypothetical protein; Closa_0553; phage(gi313768026)  3e-51  Click
4 624677..625165  PHAGE_Entero_SfV: putative flippase; Closa_0554; phage(gi19549013)  1e-08  Click
5 complement(627064..627420)  PHAGE_Stx2_c_1717: transposase; Closa_0557; phage(gi209447152)  2e-11  Click
6 complement(627413..627757)  hypothetical protein; Closa_0558  N/A  Click
7 complement(627949..629490)  PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; Closa_0559; phage(gi26989833)  1e-90  Click
Region 2, total : 34 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 780271..781002  PHAGE_Bacill_36: baseplate hub protein; Closa_0688; phage(gi156564128)  1e-08  Click
2 781313..781576  PHAGE_Megavi_chiliensis: hypothetical protein; Closa_0689; phage(gi363540151)  2e-14  Click
3 781728..782036  PHAGE_Ostreo_OlV1: hypothetical protein; Closa_0690; phage(gi313844185)  1e-05  Click
4 782109..782657  phosphodiesterase, MJ0936 family; Closa_0691  N/A  Click
5 782659..783828  rRNA (guanine-N(2)-)-methyltransferase; Closa_0692  N/A  Click
6 783818..785203  PHAGE_Choris_MNPV: cathepsin; Closa_0693; phage(gi37651368)  4e-11  Click
7 785228..785863  PHAGE_Uganda_virus: polyprotein; Closa_0694; phage(gi314998982)  2e-10  Click
8 785841..786332  phosphodiesterase, MJ0936 family; Closa_0695  N/A  Click
9 786570..787112  PHAGE_Strept_1: lysozyme; Closa_0696; phage(gi9629549)  2e-18  Click
10 complement(789222..789404)  hypothetical protein; Closa_0698  N/A  Click
11 complement(789536..791206)  peptidase S8 and S53 subtilisin kexin sedolisin; Closa_0699  N/A  Click
12 791507..792127  NUDIX hydrolase; Closa_0700  N/A  Click
13 complement(792335..792499)  hypothetical protein; Closa_0701  N/A  Click
14 792598..792613  attL    ATATTGATAGTTGGTA  N/A  Click
15 793293..793805  transcriptional regulator, CarD family; Closa_0702  N/A  Click
16 complement(793927..794006)  tRNA  N/A  Click
17 795393..795404  attL    GGGAGGCAGCAG  N/A  Click
18 796918..796990  tRNA  N/A  Click
19 800352..800424  tRNA  N/A  Click
20 complement(800539..801738)  PHAGE_Strept_6: putative integrase; Closa_0703; phage(gi28876488)  6e-07  Click
21 802005..802127  hypothetical protein; Closa_0704  N/A  Click
22 complement(802135..802659)  PHAGE_Clostr_phiSM101: Helix-turn-helix domain protein; Closa_0705; phage(gi110804036)  4e-12  Click
23 802790..802972  hypothetical protein; Closa_0706  N/A  Click
24 803021..803182  hypothetical protein; Closa_0707  N/A  Click
25 803223..803390  hypothetical protein; Closa_0708  N/A  Click
26 803424..803591  hypothetical protein; Closa_0709  N/A  Click
27 complement(803604..803822)  hypothetical protein; Closa_0710  N/A  Click
28 803924..804277  hypothetical protein; Closa_0711  N/A  Click
29 804280..804591  hypothetical protein; Closa_0712  N/A  Click
30 804785..805567  PHAGE_Clostr_PhiS63: gp31; Closa_0713; phage(gi388570658)  1e-12  Click
31 805581..805811  hypothetical protein; Closa_0714  N/A  Click
32 805808..806023  hypothetical protein; Closa_0715  N/A  Click
33 806084..806530  PHAGE_Entero_P1: pmgM; Closa_0716; phage(gi46401706)  2e-14  Click
34 806527..807309  PHAGE_Entero_EF62phi: chromosome partitioning ATPase; Closa_0717; phage(gi384519759)  2e-08  Click
35 807310..808368  PHAGE_Saimir_2: unnamed protein product; Closa_0718; phage(gi9626029)  2e-06  Click
36 808378..808389  attR    GGGAGGCAGCAG  N/A  Click
37 808497..809504  PHAGE_Thermu_45: XerD-like integrase; Closa_0719; phage(gi157265299)  3e-10  Click
38 809689..809841  hypothetical protein; Closa_0720  N/A  Click
39 809834..810796  PHAGE_Staphy_K: hypothetical protein KgORF28; Closa_0721; phage(gi48696419)  7e-27  Click
40 811000..811677  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp66; Closa_0722; phage(gi90592702)  6e-05  Click
41 815340..815355  attR    ATATTGATAGTTGGTA  N/A  Click
Region 3, total : 35 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 810662..810675  attL    GCAGAAGCAGAGGC  N/A  Click
2 815901..816695  PHAGE_Lister_2389: methylase; Closa_0735; phage(gi17488539)  2e-48  Click
3 816751..817101  hypothetical protein; Closa_0736  N/A  Click
4 817325..817552  hypothetical protein; Closa_0737  N/A  Click
5 817597..817998  hypothetical protein; Closa_0738  N/A  Click
6 818192..818533  PHAGE_Lister_2389: Gp54 protein; Closa_0739; phage(gi17488559)  5e-17  Click
7 818717..819040  PHAGE_Clostr_phiCD6356: putative terminase small subunit; Closa_0740; phage(gi326536848)  4e-10  Click
8 819030..820712  PHAGE_Lister_2389: terminase large subunit; Closa_0741; phage(gi17488505)  9e-82  Click
9 820731..821909  PHAGE_Lister_2389: hypothetical protein 2389gp03; Closa_0742; phage(gi17488506)  3e-57  Click
10 821926..822684  PHAGE_Lactob_JCL1032: putative ClpP protease; Closa_0743; phage(gi418489116)  2e-29  Click
11 822689..823867  PHAGE_Lister_2389: major capsid protein a; Closa_0744; phage(gi17488508)  5e-78  Click
12 823969..824262  PHAGE_Lister_2389: Gp6 protein; Closa_0745; phage(gi17488509)  5e-06  Click
13 824237..824584  hypothetical protein; Closa_0746  N/A  Click
14 824588..824965  PHAGE_Lactoc_bIL285: Orf48; Closa_0747; phage(gi13095728)  3e-19  Click
15 824962..825294  PHAGE_Geobac_E2: hypothetical protein GBVE2_gp011; Closa_0748; phage(gi148747738)  7e-16  Click
16 825284..825853  PHAGE_Geobac_GBSV1: major tail protein; Closa_0749; phage(gi115334636)  9e-43  Click
17 825857..826231  PHAGE_Geobac_GBSV1: hypothetical protein GPGV1_gp27; Closa_0750; phage(gi115334637)  5e-14  Click
18 826228..826392  phage-like protein; Closa_0751  N/A  Click
19 826404..829040  PHAGE_Staphy_P954: tail length tape measure protein; Closa_0752; phage(gi257136415)  8e-91  Click
20 829040..829750  PHAGE_Clostr_phi8074_B1: putative phage tail protein; Closa_0753; phage(gi431810373)  2e-15  Click
21 829750..831684  PHAGE_Clostr_phi8074_B1: putative phage tail protein; Closa_0754; phage(gi431810378)  9e-20  Click
22 831754..832128  PHAGE_Strept_SM1: gp56; Closa_0755; phage(gi32469431)  2e-05  Click
23 832243..832389  hypothetical protein; Closa_0756  N/A  Click
24 832386..832988  PHAGE_Clostr_st: hypothetical protein CST121; Closa_0757; phage(gi80159807)  2e-15  Click
25 833050..833622  PHAGE_Escher_bV_EcoS_AKFV33: putative tail fiber protein; Closa_0758; phage(gi388570497)  9e-06  Click
26 833638..835095  hypothetical protein; Closa_0759  N/A  Click
27 835186..835566  hypothetical protein; Closa_0760  N/A  Click
28 835566..835670  hypothetical protein; Closa_0761  N/A  Click
29 835693..836034  hypothetical protein; Closa_0762  N/A  Click
30 836038..836358  hypothetical protein; Closa_0763  N/A  Click
31 836438..837277  PHAGE_Strept_1: lysozyme; Closa_0764; phage(gi9629549)  5e-13  Click
32 837522..837749  hypothetical protein; Closa_0765  N/A  Click
33 837736..838200  hypothetical protein; Closa_0766  N/A  Click
34 838472..838570  hypothetical protein; Closa_0767  N/A  Click
35 complement(838608..838892)  hypothetical protein; Closa_0768  N/A  Click
36 complement(839242..840573)  PHAGE_Staphy_2: integrase; Closa_0769; phage(gi156603950)  2e-13  Click
37 849821..849834  attR    GCAGAAGCAGAGGC  N/A  Click
Region 4, total : 36 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1489787..1490602  PHAGE_Lister_A006: gp21; Closa_1387; phage(gi157325436)  4e-28  Click
2 1491189..1491374  hypothetical protein; Closa_1388  N/A  Click
3 1491445..1492146  PHAGE_Clostr_phiC2: putative terminase small subunit; Closa_1389; phage(gi134287336)  8e-55  Click
4 1492139..1493425  PHAGE_Bacill_PM1: hypothetical protein; Closa_1390; phage(gi472438300)  6e-134  Click
5 1493436..1494842  PHAGE_Strept_1: portal protein; Closa_1391; phage(gi39653714)  3e-110  Click
6 1494842..1496416  PHAGE_Strept_1: minor head protein; Closa_1392; phage(gi39653715)  2e-35  Click
7 1496413..1496688  hypothetical protein; Closa_1393  N/A  Click
8 1496972..1497565  PHAGE_Staphy_CNPH82: putative phage minor capsid protein; Closa_1394; phage(gi119953685)  3e-13  Click
9 1497596..1498594  PHAGE_Strept_1: major head protein; Closa_1395; phage(gi39653721)  2e-60  Click
10 1498604..1498957  hypothetical protein; Closa_1396  N/A  Click
11 1498950..1499288  hypothetical protein; Closa_1397  N/A  Click
12 1499285..1499791  PHAGE_Strept_1: hypothetical protein EJ-1p50; Closa_1398; phage(gi39653724)  4e-05  Click
13 1499781..1500200  PHAGE_Strept_1: hypothetical protein EJ-1p51; Closa_1399; phage(gi39653725)  3e-11  Click
14 1500202..1501242  PHAGE_Strept_1: sheath tail protein; Closa_1400; phage(gi39653727)  2e-40  Click
15 1501254..1501727  PHAGE_Strept_1: core tail protein; Closa_1401; phage(gi39653728)  3e-23  Click
16 1501776..1502186  PHAGE_Strept_1: hypothetical protein EJ-1p55; Closa_1402; phage(gi39653729)  6e-15  Click
17 1502207..1502356  hypothetical protein; Closa_1403  N/A  Click
18 1502368..1504332  PHAGE_Strept_1: tail length tape measure protein; Closa_1404; phage(gi39653730)  9e-57  Click
19 1504332..1504994  PHAGE_Strept_1: hypothetical protein EJ-1p57; Closa_1405; phage(gi39653731)  6e-13  Click
20 1505007..1505972  PHAGE_Strept_1: hypothetical protein EJ-1p58; Closa_1406; phage(gi39653732)  7e-35  Click
21 1505987..1506271  hypothetical protein; Closa_1407  N/A  Click
22 1506273..1506659  PHAGE_Strept_1: hypothetical protein EJ-1p60; Closa_1408; phage(gi39653734)  8e-20  Click
23 1506656..1507666  PHAGE_Strept_1: tail protein; Closa_1409; phage(gi39653735)  3e-39  Click
24 1507671..1508204  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp28; Closa_1410; phage(gi90592664)  5e-13  Click
25 1508205..1509440  PHAGE_Lister_A118: gp19; Closa_1411; phage(gi16798802)  2e-11  Click
26 1509453..1509899  hypothetical protein; Closa_1412  N/A  Click
27 1509911..1510048  PHAGE_Bacill_PM1: hypothetical protein; Closa_1413; phage(gi472438327)  7e-05  Click
28 1510070..1510498  PHAGE_Clostr_phiMMP04: holin; Closa_1414; phage(gi414090467)  4e-29  Click
29 1510567..1511400  PHAGE_Strept_PH10: lysA; Closa_1415; phage(gi238821368)  2e-08  Click
30 complement(1511456..1512007)  PHAGE_Strept_1: lysozyme; Closa_1416; phage(gi9629549)  7e-13  Click
31 complement(1512070..1512993)  PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p117; Closa_1417; phage(gi9630242)  7e-23  Click
32 complement(1513057..1513368)  hypothetical protein; Closa_1418  N/A  Click
33 complement(1513380..1513553)  hypothetical protein; Closa_1419  N/A  Click
34 complement(1513697..1514758)  hypothetical protein; Closa_1420  N/A  Click
35 1514906..1515049  hypothetical protein; Closa_1421  N/A  Click
36 1515159..1515938  PHAGE_Bacill_SPBc2: putative antirepressor; Closa_1422; phage(gi9630225)  3e-25  Click
Region 5, total : 15 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1861498..1861509  attL    ATACCCTAATAA  N/A  Click
2 complement(1873164..1873964)  PROPHAGE_Lactoc_Il1403: IS1077F transposase; Closa_1744; phage(gi15674057)  1e-87  Click
3 complement(1874006..1874569)  PROPHAGE_Ralsto_GMI1000: ISRSO11-transposase ORFA protein; Closa_1745; phage(gi17546156)  6e-20  Click
4 1874760..1875290  RNA polymerase, sigma-24 subunit, ECF subfamily; Closa_1746  N/A  Click
5 1875726..1876763  Rad3-related DNA helicase-like protein; Closa_1747  N/A  Click
6 1876760..1877200  hypothetical protein; Closa_1748  N/A  Click
7 1877487..1877744  hypothetical protein; Closa_1750  N/A  Click
8 1879918..1880184  prevent-host-death family protein; Closa_1754  N/A  Click
9 1880174..1880479  plasmid stabilization system; Closa_1755  N/A  Click
10 1880555..1881820  PHAGE_Burkho_phiE125: putative portal protein; Closa_1756; phage(gi17975165)  2e-72  Click
11 1881878..1882588  PHAGE_Geobac_E2: putative Clp peptidase; Closa_1757; phage(gi148747731)  4e-44  Click
12 1882602..1883810  PHAGE_Entero_phiP27: putative major capsid protein; Closa_1758; phage(gi18249904)  4e-40  Click
13 1883872..1884147  uncharacterized phage protein (putative DNA packaging); Closa_1759  N/A  Click
14 1884147..1884374  PHAGE_Geobac_E2: putative head-tail adaptor; Closa_1760; phage(gi148747735)  3e-07  Click
15 1885224..1885559  hypothetical protein; Closa_1762  N/A  Click
16 1885598..1886110  PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p012; Closa_1763; phage(gi9630137)  6e-08  Click
17 1890604..1890615  attR    ATACCCTAATAA  N/A  Click