Definition Herbaspirillum seropedicae SmR1 chromosome, complete genome.
Accession NC_014323
Length 5,513,887
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 33 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 205685..205698  attL    CCGGCCCTGCCGCG  N/A  Click
2 complement(215551..216300)  PHAGE_Burkho_phiE255: gp25, tail fiber; Hsero_0203; phage(gi134288819)  4e-16  Click
3 complement(216307..217431)  PHAGE_Burkho_phiE255: gp24, conserved hypothetical protein; Hsero_0204; phage(gi134288837)  1e-83  Click
4 complement(217462..218649)  hypothetical protein; Hsero_0205  N/A  Click
5 complement(218672..219103)  hypothetical protein; Hsero_0206  N/A  Click
6 complement(219231..219950)  PHAGE_Equid__9: envelope glycoprotein J; Hsero_0207; phage(gi216905924)  3e-05  Click
7 complement(220005..220223)  hypothetical protein; Hsero_0208  N/A  Click
8 complement(220331..220822)  PHAGE_Halomo_1: putative tail protein; Hsero_0209; phage(gi167832358)  6e-10  Click
9 complement(220819..221499)  PHAGE_Burkho_phiE255: gp25, tail fiber; Hsero_0210; phage(gi134288819)  2e-11  Click
10 complement(221503..222669)  PHAGE_Burkho_phiE255: gp24, conserved hypothetical protein; Hsero_0211; phage(gi134288837)  2e-89  Click
11 complement(222666..223091)  PHAGE_Burkho_phiE255: gp23; Hsero_0212; phage(gi134288814)  6e-22  Click
12 complement(223160..223753)  PHAGE_Burkho_phiE255: gp22; Hsero_0213; phage(gi134288817)  2e-53  Click
13 complement(223750..224820)  PHAGE_Burkho_phiE255: gp21; Hsero_0214; phage(gi134288840)  1e-69  Click
14 complement(224808..225047)  PHAGE_Burkho_phiE255: gp20, phage Tail Protein X; Hsero_0215; phage(gi134288808)  7e-18  Click
15 complement(225044..225634)  PHAGE_Burkho_phiE255: gp19; Hsero_0216; phage(gi134288789)  3e-29  Click
16 complement(225634..227973)  PHAGE_Burkho_phiE255: gp18; Hsero_0217; phage(gi134288800)  6e-77  Click
17 227961..228395  hypothetical protein; Hsero_0218  N/A  Click
18 complement(228457..228981)  PHAGE_Burkho_phiE255: gp14, phage major tail tube protein; Hsero_0219; phage(gi134288801)  1e-49  Click
19 complement(229013..230455)  PHAGE_Burkho_phiE255: gp13, phage tail sheath protein; Hsero_0220; phage(gi134288804)  4e-144  Click
20 complement(230491..230679)  PHAGE_Burkho_phiE255: gp12; Hsero_0221; phage(gi134288824)  4e-05  Click
21 complement(230920..231726)  PHAGE_Aeromo_phiO18P: putative cI repressor; Hsero_0222; phage(gi148727133)  6e-21  Click
22 231806..231997  PHAGE_Burkho_phiE255: gp45, conserved hypothetical protein; Hsero_0223; phage(gi134288820)  2e-09  Click
23 232038..232361  PHAGE_Burkho_phiE255: gp42; Hsero_0224; phage(gi134288815)  1e-11  Click
24 232374..233258  PHAGE_Burkho_phiE255: gp41; Hsero_0225; phage(gi134288829)  3e-19  Click
25 233271..235088  PHAGE_Burkho_phiE255: gp40; Hsero_0226; phage(gi134288809)  9e-48  Click
26 235090..236010  PHAGE_Burkho_phiE255: gp39; Hsero_0227; phage(gi134288793)  1e-74  Click
27 236039..236407  PHAGE_Burkho_phiE255: gp32, DNA-binding protein RdgB; Hsero_0228; phage(gi134288805)  6e-12  Click
28 236489..236929  PHAGE_Bacill_SPO1: gp19.3; Hsero_0229; phage(gi209972932)  1e-17  Click
29 236926..237348  hypothetical protein; Hsero_0230  N/A  Click
30 237345..237767  PHAGE_Pseudo_Lu11: putative tail assembly protein; Hsero_0231; phage(gi388684690)  4e-17  Click
31 237751..238032  PHAGE_Burkho_phiE255: gp54; Hsero_0232; phage(gi134288827)  3e-12  Click
32 238051..238064  attR    CCGGCCCTGCCGCG  N/A  Click
33 238395..239696  PHAGE_Burkho_phi1026b: gp59; Hsero_0233; phage(gi38707949)  3e-139  Click
34 239705..240934  prolidase; Hsero_0234  N/A  Click
35 241053..241958  PHAGE_Burkho_phi1026b: gp58; Hsero_0235; phage(gi38707948)  5e-77  Click
Region 2, total : 45 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 967780..967802  attL    GACTCATAATCCGTTGGTGCCGT  N/A  Click
2 complement(970186..971163)  PHAGE_Pseudo_PAJU2: putative integrase; Hsero_0876; phage(gi209552450)  4e-16  Click
3 complement(971320..971703)  hypothetical protein; Hsero_0877  N/A  Click
4 complement(971843..973894)  PHAGE_Burkho_2: gp15, hypothetical replication protein; Hsero_0878; phage(gi134288692)  1e-111  Click
5 complement(974612..974872)  PHAGE_Ralsto_phiRSA1: phage transcription activator Org/Delta; Hsero_0879; phage(gi145708112)  7e-10  Click
6 complement(974863..975060)  hypothetical protein; Hsero_0880  N/A  Click
7 complement(975053..975295)  hypothetical protein; Hsero_0881  N/A  Click
8 975609..976046  PHAGE_Ralsto_phiRSA1: putative phage DNA-binding protein; Hsero_0882; phage(gi145708109)  8e-20  Click
9 976168..976833  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp33; Hsero_0883; phage(gi145708107)  3e-15  Click
10 complement(976834..978063)  PHAGE_Entero_2: P2 gpD-like tail protein; Hsero_0884; phage(gi169936019)  4e-79  Click
11 complement(978063..978590)  PHAGE_Ralsto_phiRSA1: bacteriophage gpU; Hsero_0885; phage(gi145708105)  5e-36  Click
12 complement(978604..981228)  PHAGE_Ralsto_phiRSA1: bacteriophage tail protein gpT; Hsero_0886; phage(gi145708104)  0.0  Click
13 complement(981351..981674)  PHAGE_Ralsto_phiRSA1: bacteriophage gpE; Hsero_0887; phage(gi145708103)  8e-22  Click
14 complement(981734..982243)  PHAGE_Burkho_phiE202: gp29, phage major tail tube protein; Hsero_0888; phage(gi134288759)  1e-43  Click
15 complement(982298..983473)  PHAGE_Ralsto_phiRSA1: major tail seath protein gpFI; Hsero_0889; phage(gi145708101)  4e-139  Click
16 complement(983493..983804)  tail fiber assembly protein; Hsero_0890  N/A  Click
17 complement(983807..984481)  PHAGE_Pseudo_2: predicted phage tail fibre protein; Hsero_0891; phage(gi281306695)  5e-09  Click
18 complement(984478..985014)  PHAGE_Burkho_KL3: gp22; Hsero_0892; phage(gi327198067)  8e-13  Click
19 complement(985020..986756)  PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; Hsero_0893; phage(gi145708097)  3e-47  Click
20 complement(986762..987397)  PHAGE_Ralsto_phiRSA1: phage tail protein gpI; Hsero_0894; phage(gi145708096)  1e-61  Click
21 complement(987390..988313)  PHAGE_Ralsto_phiRSA1: baseplate J-like protein; Hsero_0895; phage(gi145708095)  3e-77  Click
22 complement(988310..988654)  PHAGE_Ralsto_phiRSA1: gpW/gp25 family protein; Hsero_0896; phage(gi145708094)  2e-20  Click
23 complement(988651..989295)  PHAGE_Burkho_phi52237: phage baseplate assembly protein; Hsero_0897; phage(gi72537705)  3e-29  Click
24 complement(989443..989748)  hypothetical protein; Hsero_0898  N/A  Click
25 complement(989779..990204)  PHAGE_Burkho_phiE202: gp39, phage virion morphogenesis protein; Hsero_0899; phage(gi134288746)  3e-27  Click
26 complement(990243..990728)  PHAGE_Ralsto_phiRSA1: tail completion protein-like protein; Hsero_0900; phage(gi145708090)  4e-29  Click
27 complement(990682..991251)  PHAGE_Burkho_DC1: Rz; Hsero_0901; phage(gi401723083)  5e-12  Click
28 complement(991248..991778)  PHAGE_Salmon_epsilon34: Endolysin; Hsero_0902; phage(gi221328683)  9e-41  Click
29 complement(991775..992185)  PHAGE_Pseudo_JBD24: hypothetical protein; Hsero_0903; phage(gi448245067)  7e-08  Click
30 complement(992190..992399)  PHAGE_Burkho_phiE202: gp46, phage Tail Protein X; Hsero_0904; phage(gi134288782)  9e-11  Click
31 complement(992399..992890)  PHAGE_Burkho_phiE202: gp48, phage head completion protein (GPL); Hsero_0905; phage(gi134288751)  2e-33  Click
32 complement(992978..993697)  PHAGE_Ralsto_phiRSA1: terminase; Hsero_0906; phage(gi145708083)  4e-43  Click
33 complement(993697..994740)  PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; Hsero_0907; phage(gi145708082)  5e-117  Click
34 complement(994790..995632)  PHAGE_Ralsto_phiRSA1: phage capsid scaffolding protein; Hsero_0908; phage(gi145708081)  5e-58  Click
35 995776..997557  PHAGE_Burkho_phiE202: gp4, phage terminase, ATPase subunit; Hsero_0909; phage(gi134288784)  0.0  Click
36 997557..998609  PHAGE_Ralsto_phiRSA1: bacteriophage gpQ; Hsero_0910; phage(gi145708079)  9e-121  Click
37 998612..998824  hypothetical protein; Hsero_0911  N/A  Click
38 999019..999396  receiver domain-containing protein; Hsero_0912  N/A  Click
39 complement(999413..999790)  hypothetical protein; Hsero_0913  N/A  Click
40 complement(999952..1000674)  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp04; Hsero_0914; phage(gi145708078)  6e-37  Click
41 complement(1000679..1001266)  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp03; Hsero_0915; phage(gi145708077)  2e-21  Click
42 complement(1001269..1001628)  hypothetical protein; Hsero_0916  N/A  Click
43 complement(1001612..1002118)  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp02; Hsero_0917; phage(gi145708076)  2e-32  Click
44 complement(1002118..1002531)  PHAGE_Ralsto_phiRSA1: putative bacteriophage gp29 protein; Hsero_0918; phage(gi145708075)  2e-25  Click
45 1002690..1002863  hypothetical protein; Hsero_0919  N/A  Click
46 1002956..1004071  PHAGE_Entero_RB43: hypothetical protein RB43ORF182c; Hsero_0920; phage(gi66391633)  6e-06  Click
47 1005193..1005215  attR    GACTCATAATCCGTTGGTGCCGT  N/A  Click