Definition Hyphomicrobium denitrificans ATCC 51888 chromosome, complete genome.
Accession NC_014313
Length 3,638,969
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 157496..158368  PHAGE_Burkho_Bcep22: Bcep22gp75; Hden_0159; phage(gi38640380)  8e-05  Click
2 158425..159537  PHAGE_Erwini_PEp14: hypothetical protein; Hden_0160; phage(gi374531858)  1e-05  Click
3 159552..160007  hypothetical protein; Hden_0161  N/A  Click
4 160058..160273  hypothetical protein; Hden_0162  N/A  Click
5 160254..160625  hypothetical protein; Hden_0163  N/A  Click
6 160625..162046  PHAGE_Xylell_Xfas53: head completion protein; Hden_0164; phage(gi273810455)  4e-22  Click
7 162043..162495  outer membrane autotransporter; Hden_0165  N/A  Click
8 162492..163184  PHAGE_Equid__4: envelope glycoprotein J; Hden_0166; phage(gi9629801)  8e-05  Click
9 163216..163821  hypothetical protein; Hden_0167  N/A  Click
10 163821..164309  PHAGE_Xantho_phiL7: P07; Hden_0168; phage(gi238695594)  3e-24  Click
11 164309..165490  PHAGE_Entero_IME10: gp20; Hden_0169; phage(gi422934289)  9e-09  Click
12 165490..167589  PHAGE_Sulfit_pCB2047_C: hypothetical protein; Hden_0170; phage(gi472341754)  1e-13  Click
13 167812..169161  PHAGE_Aeromo_CC2: short tail fibers; Hden_0172; phage(gi423261697)  2e-05  Click
14 169158..169601  hypothetical protein; Hden_0173  N/A  Click
15 169588..169935  hypothetical protein; Hden_0174  N/A  Click
16 169932..170729  PHAGE_Serrat_phiMAM1: baseplate hub subunit and tail lysozyme; Hden_0175; phage(gi440789403)  7e-13  Click
Region 2, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1155302..1157329  PHAGE_Xantho_OP1: putative head portal protein; Hden_1106; phage(gi84662598)  3e-22  Click
2 1157351..1157740  hypothetical protein; Hden_1107  N/A  Click
3 1157992..1158312  hypothetical protein; Hden_1108  N/A  Click
4 1158560..1158979  hypothetical protein; Hden_1109  N/A  Click
5 1159144..1159848  PHAGE_Azospi_Cd: phage head maturation protease; Hden_1110; phage(gi168495135)  2e-33  Click
6 1160022..1161263  PHAGE_Salmon_ST64B: Major capsid protein precursor; Hden_1111; phage(gi23505451)  3e-77  Click
7 1161520..1162095  PHAGE_Rhodob_RcapNL: hypothetical protein; Hden_1112; phage(gi461474967)  2e-18  Click
8 1162092..1162424  PHAGE_Geobac_E2: putative head-tail adaptor; Hden_1113; phage(gi148747735)  1e-07  Click
9 1162421..1162591  ExbD/TolR-like translocation protein; Hden_1114  N/A  Click
10 1162591..1163004  PHAGE_Rhizob_3: p012; Hden_1115; phage(gi195546543)  9e-14  Click
11 1163163..1163576  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Hden_1116; phage(gi461474972)  5e-21  Click
12 1163738..1164118  hypothetical protein; Hden_1117  N/A  Click
13 1164118..1164291  hypothetical protein; Hden_1118  N/A  Click
14 1164296..1164889  PHAGE_Shigel_EP23: phage tail length tape-measure protein 1; Hden_1119; phage(gi371496286)  2e-14  Click
15 1164902..1165540  PHAGE_Roseob_1: putative glycoside hydrolase; Hden_1120; phage(gi331028135)  4e-44  Click
16 1165537..1166397  PHAGE_Roseob_1: gene transfer agent; Hden_1121; phage(gi331028136)  6e-75  Click
17 1166401..1166850  PHAGE_Roseob_1: phage cell wall peptidase; Hden_1122; phage(gi331028137)  2e-32  Click
18 1166854..1170801  PHAGE_Roseob_1: gene transfer agent; Hden_1123; phage(gi331028138)  0.0  Click
19 1171172..1172485  PHAGE_Serrat_phiMAM1: baseplate hub subunit and tail lysozyme; Hden_1124; phage(gi440789403)  3e-26  Click
20 1172580..1172870  hypothetical protein; Hden_1125  N/A  Click
21 1172952..1173623  PHAGE_Feldma_virus: putative sensor histidine kinase; Hden_1126; phage(gi197322366)  1e-04  Click
Region 3, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1251145..1251354  phage-like protein; Hden_1226  N/A  Click
2 1251389..1252924  PHAGE_Escher_D108: tail sheath protein; Hden_1227; phage(gi281199683)  5e-53  Click
3 1252975..1253340  hypothetical protein; Hden_1228  N/A  Click
4 1253379..1253783  hypothetical protein; Hden_1229  N/A  Click
5 1253948..1255957  PHAGE_Geobac_E2: putative tail tape measure protein; Hden_1230; phage(gi148747742)  7e-09  Click
6 1255957..1257216  PHAGE_Escher_D108: DNA circularization protein; Hden_1231; phage(gi281199688)  1e-09  Click
7 1257225..1258271  PHAGE_Escher_D108: baseplate assembly protein; Hden_1232; phage(gi281199689)  8e-29  Click
8 1258271..1258630  PHAGE_Haemop_SuMu: phage-related baseplate assembly protein gp45; Hden_1233; phage(gi418489069)  2e-05  Click
9 1258637..1258894  PHAGE_Ralsto_phiRSA1: putative bacteriophage gp29 protein; Hden_1234; phage(gi145708075)  3e-07  Click
10 1258894..1259487  PHAGE_Escher_D108: hypothetical protein; Hden_1235; phage(gi281199691)  1e-12  Click
11 1259500..1260582  PHAGE_Escher_D108: hypothetical protein; Hden_1236; phage(gi281199692)  2e-39  Click
12 1260579..1261310  hypothetical protein; Hden_1237  N/A  Click
13 1261303..1262220  PHAGE_Synech_S_RIP1: hypothetical protein; Hden_1238; phage(gi472342939)  7e-08  Click
14 1262225..1263535  PHAGE_Cyanop_PSS2: fiber protein; Hden_1239; phage(gi254729534)  4e-20  Click
15 1263526..1264356  PHAGE_Mycoba_Solon: gp5; Hden_1240; phage(gi203463364)  3e-08  Click
16 1264399..1265277  PHAGE_Agroba_7_7_1: hypothetical protein; Hden_1241; phage(gi435844350)  6e-35  Click
Region 4, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1607211..1608083  PHAGE_Burkho_Bcep22: Bcep22gp75; Hden_1578; phage(gi38640380)  8e-05  Click
2 1608140..1609252  PHAGE_Erwini_PEp14: hypothetical protein; Hden_1579; phage(gi374531858)  1e-05  Click
3 1609267..1609722  hypothetical protein; Hden_1580  N/A  Click
4 1609773..1609988  hypothetical protein; Hden_1581  N/A  Click
5 1609969..1610340  hypothetical protein; Hden_1582  N/A  Click
6 1610340..1611761  PHAGE_Xylell_Xfas53: head completion protein; Hden_1583; phage(gi273810455)  4e-22  Click
7 1611758..1612210  outer membrane autotransporter; Hden_1584  N/A  Click
8 1612207..1612899  PHAGE_Equid__4: envelope glycoprotein J; Hden_1585; phage(gi9629801)  8e-05  Click
9 1612931..1613536  hypothetical protein; Hden_1586  N/A  Click
10 1613536..1614024  PHAGE_Xantho_phiL7: P07; Hden_1587; phage(gi238695594)  3e-24  Click
11 1614024..1615205  PHAGE_Entero_IME10: gp20; Hden_1588; phage(gi422934289)  9e-09  Click
12 1615205..1617304  PHAGE_Sulfit_pCB2047_C: hypothetical protein; Hden_1589; phage(gi472341754)  1e-13  Click
13 1617527..1618816  PHAGE_Aeromo_CC2: short tail fibers; Hden_1591; phage(gi423261697)  2e-05  Click
14 1618874..1619317  hypothetical protein; Hden_1592  N/A  Click
15 1619304..1619651  hypothetical protein; Hden_1593  N/A  Click
16 1619648..1620445  PHAGE_Serrat_phiMAM1: baseplate hub subunit and tail lysozyme; Hden_1594; phage(gi440789403)  7e-13  Click
Region 5, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3061408..3064029)  PHAGE_Rhodob_RcapMu: putative tail fiber protein; Hden_2962; phage(gi356870893)  9e-12  Click
2 3064041..3064430  hypothetical protein; Hden_2963  N/A  Click
3 complement(3064436..3064915)  hypothetical protein; Hden_2964  N/A  Click
4 complement(3064915..3065265)  hypothetical protein; Hden_2965  N/A  Click
5 complement(3065271..3067382)  PHAGE_Xantho_CP1: putative tail length tape measure protein; Hden_2966; phage(gi431811013)  5e-15  Click
6 complement(3067375..3067608)  hypothetical protein; Hden_2967  N/A  Click
7 complement(3067605..3067985)  hypothetical protein; Hden_2968  N/A  Click
8 complement(3068004..3068474)  hypothetical protein; Hden_2969  N/A  Click
9 complement(3068487..3068882)  PHAGE_Marino_P12026: hypothetical protein; Hden_2970; phage(gi399528327)  7e-10  Click
10 complement(3068969..3069484)  phage protein, HK97 gp10 family; Hden_2971  N/A  Click
11 complement(3069481..3069816)  phage head-tail adaptor; Hden_2972  N/A  Click
12 complement(3069816..3070391)  PHAGE_Rhizob_3: p008; Hden_2973; phage(gi195546539)  7e-14  Click
13 complement(3070395..3070772)  hypothetical protein; Hden_2974  N/A  Click
14 complement(3070804..3071217)  PHAGE_Rhizob_3: p009; Hden_2975; phage(gi195546540)  9e-25  Click
15 complement(3071259..3071735)  hypothetical protein; Hden_2976  N/A  Click
16 complement(3071853..3072305)  PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Hden_2977; phage(gi168495137)  6e-34  Click
17 complement(3072409..3073911)  PHAGE_Salmon_ST64B: Major capsid protein precursor; Hden_2978; phage(gi23505451)  7e-46  Click
18 complement(3073958..3074572)  PHAGE_Salmon_ST64B: Pro-head protease; Hden_2979; phage(gi23505450)  7e-18  Click
19 complement(3074608..3075441)  hypothetical protein; Hden_2980  N/A  Click
20 complement(3075464..3075742)  hypothetical protein; Hden_2981  N/A  Click
21 complement(3075724..3075996)  hypothetical protein; Hden_2982  N/A  Click
22 complement(3075993..3077339)  PHAGE_Salmon_ST64B: Portal Protein; Hden_2983; phage(gi23505449)  2e-30  Click
23 complement(3077362..3079074)  PHAGE_Salmon_ST64B: Terminase large subunit; Hden_2984; phage(gi23505447)  4e-54  Click