Definition Rhodobacter capsulatus SB 1003 chromosome, complete genome.
Accession NC_014034
Length 3,738,958
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 56 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1040378..1040389  attL    CAGCGCCGCCCG  N/A  Click
2 1053810..1054994  PROPHAGE_Escher_CFT073: transposase; RCAP_rcc00960; phage(gi26248352)  8e-10  Click
3 complement(1055082..1056062)  PHAGE_Rhodob_RcapMu: putative tail fiber protein; RCAP_rcc00961; phage(gi356870896)  0.0  Click
4 complement(1056062..1056328)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00962; phage(gi356870895)  1e-47  Click
5 complement(1056359..1057690)  PHAGE_Rhodob_RcapMu: putative tail spike protein; RCAP_rcc00963; phage(gi356870894)  0.0  Click
6 complement(1057717..1061145)  PHAGE_Rhodob_RcapMu: putative tail fiber protein; RCAP_rcc00964; phage(gi356870893)  0.0  Click
7 complement(1061142..1061582)  PHAGE_Rhodob_RcapMu: putative tail assembly protein; RCAP_rcc00965; phage(gi356870891)  3e-85  Click
8 complement(1061585..1062112)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00966; phage(gi356870890)  2e-95  Click
9 complement(1062109..1062531)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00967; phage(gi356870889)  7e-81  Click
10 complement(1062528..1065611)  PHAGE_Rhodob_RcapMu: tape measure protein; RCAP_rcc00968; phage(gi356870888)  0.0  Click
11 complement(1065613..1065828)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00969; phage(gi356870887)  2e-36  Click
12 complement(1065962..1066339)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00970; phage(gi356870886)  6e-71  Click
13 complement(1066472..1067398)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00971; phage(gi356870885)  1e-173  Click
14 complement(1067401..1067598)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00972; phage(gi356870884)  5e-32  Click
15 complement(1067601..1068032)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00973; phage(gi356870883)  9e-79  Click
16 complement(1068032..1068457)  PHAGE_Rhodob_RcapMu: conserved phage protein; RCAP_rcc00974; phage(gi356870882)  9e-76  Click
17 complement(1068457..1068747)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00975; phage(gi356870881)  1e-49  Click
18 complement(1068818..1069306)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00976; phage(gi356870892)  9e-87  Click
19 complement(1069371..1070324)  PHAGE_Rhodob_RcapMu: major capsid protein; RCAP_rcc00977; phage(gi356870880)  0.0  Click
20 complement(1070335..1070679)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00978; phage(gi356870879)  2e-57  Click
21 complement(1070692..1071804)  PHAGE_Rhodob_RcapMu: putative protease; RCAP_rcc00979; phage(gi356870877)  0.0  Click
22 complement(1072072..1072626)  PHAGE_Rhodob_RcapMu: virion morphogenesis protein; RCAP_rcc00980; phage(gi356870876)  1e-100  Click
23 complement(1072719..1074200)  PHAGE_Rhodob_RcapMu: head morphogenesis protein; RCAP_rcc00981; phage(gi356870875)  0.0  Click
24 complement(1074296..1075672)  PHAGE_Rhodob_RcapMu: putative portal protein; RCAP_rcc00982; phage(gi356870874)  0.0  Click
25 complement(1075669..1075893)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00983; phage(gi356870873)  1e-40  Click
26 complement(1075890..1076180)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00984; phage(gi356870872)  4e-57  Click
27 complement(1076377..1078035)  PHAGE_Rhodob_RcapMu: large terminase; RCAP_rcc00985; phage(gi356870870)  0.0  Click
28 complement(1078032..1078535)  PHAGE_Rhodob_RcapMu: putative DNA-binding protein; RCAP_rcc00986; phage(gi356870869)  2e-89  Click
29 complement(1078522..1078788)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00987; phage(gi356870868)  5e-45  Click
30 complement(1078785..1079297)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00988; phage(gi356870867)  1e-91  Click
31 complement(1079297..1080226)  PHAGE_Rhodob_RcapMu: lysozyme; RCAP_rcc00989; phage(gi356870866)  1e-175  Click
32 complement(1080298..1080666)  PHAGE_Rhodob_RcapMu: putative transcriptional regulator; RCAP_rcc00990; phage(gi356870865)  1e-65  Click
33 complement(1080715..1081392)  PHAGE_Rhodob_RcapMu: conserved transposable phage protein; RCAP_rcc00991; phage(gi356870864)  1e-123  Click
34 complement(1081392..1081499)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00992; phage(gi356870862)  1e-14  Click
35 complement(1081496..1081942)  PHAGE_Rhodob_RcapMu: GemA-like protein; RCAP_rcc00993; phage(gi356870863)  4e-82  Click
36 complement(1081939..1082154)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00994; phage(gi356870861)  3e-36  Click
37 complement(1082151..1083035)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00995; phage(gi356870860)  6e-165  Click
38 complement(1083112..1083387)  PHAGE_Rhodob_RcapMu: DNA-binding protein HU; RCAP_rcc00996; phage(gi356870859)  1e-45  Click
39 complement(1083480..1083686)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc00997; phage(gi356870858)  1e-33  Click
40 complement(1083713..1084255)  PHAGE_Rhodob_RcapMu: host-nuclease inhibitor Gam; RCAP_rcc00998; phage(gi356870857)  5e-96  Click
41 complement(1084242..1084607)  PHAGE_Rhodob_RcapMu: LacI-like regulatory protein; RCAP_rcc00999; phage(gi356870856)  3e-67  Click
42 complement(1084598..1085185)  PHAGE_Rhodob_RcapMu: TroR domain transcriptional regulator; RCAP_rcc01000; phage(gi356870855)  1e-102  Click
43 complement(1085185..1085958)  PHAGE_Rhodob_RcapMu: transposition protein B; RCAP_rcc01001; phage(gi356870854)  4e-144  Click
44 1085638..1085649  attR    CAGCGCCGCCCG  N/A  Click
45 complement(1085991..1088291)  PHAGE_Rhodob_RcapMu: transposase A; RCAP_rcc01002; phage(gi356870853)  0.0  Click
46 complement(1088288..1088755)  PHAGE_Rhodob_RcapMu: conserved transposable prophage protein; RCAP_rcc01003; phage(gi356870852)  4e-84  Click
47 complement(1088757..1089608)  PHAGE_Rhodob_RcapMu: ParB-like nuclease; RCAP_rcc01004; phage(gi356870851)  4e-157  Click
48 complement(1089618..1089809)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01005; phage(gi356870850)  6e-28  Click
49 complement(1089809..1090099)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01006; phage(gi356870849)  4e-54  Click
50 complement(1090096..1090221)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01007; phage(gi356870848)  4e-16  Click
51 complement(1090221..1090355)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01008; phage(gi356870847)  2e-19  Click
52 complement(1090345..1090662)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01009; phage(gi356870846)  2e-53  Click
53 complement(1090659..1090952)  PHAGE_Rhodob_RcapMu: ner-like transcriptional regulator; RCAP_rcc01010; phage(gi356870845)  3e-50  Click
54 1091202..1091813  PHAGE_Rhodob_RcapMu: c-repressor; RCAP_rcc01011; phage(gi356870844)  1e-116  Click
55 1091975..1092355  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01012; phage(gi356870843)  3e-69  Click
56 1092367..1092843  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01013; phage(gi356870842)  2e-89  Click
57 1092846..1093535  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01014; phage(gi356870841)  3e-138  Click
58 1093532..1093732  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc01015; phage(gi356870840)  6e-33  Click
Region 2, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1818942..1820309  PHAGE_Strept_6: terminase large subunit; RCAP_rcc01683; phage(gi93007440)  1e-64  Click
2 1820495..1821685  PHAGE_Strept_6: portal protein; RCAP_rcc01684; phage(gi93007441)  3e-18  Click
3 1821689..1821922  hypothetical protein; RCAP_rcc01685  N/A  Click
4 1821933..1822487  PHAGE_Tetras_SI1: phage prohead protease; RCAP_rcc01686; phage(gi472342256)  1e-26  Click
5 1822519..1823715  PHAGE_Azospi_Cd: Phage major capsid protein; RCAP_rcc01687; phage(gi168495136)  3e-68  Click
6 1823888..1824481  hypothetical protein; RCAP_rcc01688  N/A  Click
7 1824478..1824816  hypothetical protein; RCAP_rcc01689  N/A  Click
8 1824813..1825220  PHAGE_Strept_phiSASD1: gp33; RCAP_rcc01690; phage(gi298103498)  5e-06  Click
9 1825261..1825674  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; RCAP_rcc01691; phage(gi461474972)  6e-18  Click
10 1825682..1826008  hypothetical protein; RCAP_rcc01692  N/A  Click
11 1826005..1826232  hypothetical protein; RCAP_rcc01693  N/A  Click
12 1826219..1826878  PHAGE_Shigel_EP23: phage tail length tape-measure protein 1; RCAP_rcc01694; phage(gi371496286)  3e-14  Click
13 1826889..1827521  PHAGE_Roseob_1: putative glycoside hydrolase; RCAP_rcc01695; phage(gi331028135)  1e-45  Click
14 1827521..1828411  PHAGE_Tetras_SI1: hypothetical protein; RCAP_rcc01696; phage(gi472342235)  3e-32  Click
15 1828408..1828860  PHAGE_Roseob_1: phage cell wall peptidase; RCAP_rcc01697; phage(gi331028137)  2e-34  Click
16 1828861..1832775  PHAGE_Tetras_SI1: hypothetical protein; RCAP_rcc01698; phage(gi472342233)  8e-37  Click
17 1832779..1833195  hypothetical protein; RCAP_rcc01699  N/A  Click
18 1833137..1833955  serine O-acetyltransferase; RCAP_rcc01700  N/A  Click
19 1833964..1834623  phospholipid/glycerol acyltransferase; RCAP_rcc01701  N/A  Click
20 1834620..1835558  phosphatidate cytidylyltransferase; RCAP_rcc01702  N/A  Click
21 complement(1835612..1836868)  PHAGE_Macaci_1: large tegument protein; RCAP_rcc01703; phage(gi30984464)  1e-06  Click
Region 3, total : 27 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2134380..2134395  attL    GATGACGCGCCGCAGC  N/A  Click
2 2139077..2139988  PHAGE_Rhodob_RcapNL: hypothetical protein; RCAP_rcc01981; phage(gi461474958)  3e-36  Click
3 2140111..2140485  PHAGE_Bacill_phi105: hypothetical protein phi105_50; RCAP_rcc01982; phage(gi22855043)  6e-20  Click
4 2140608..2141048  PHAGE_Mycoba_Porky: gp5; RCAP_rcc01983; phage(gi194303301)  5e-06  Click
5 2141032..2142705  PHAGE_Burkho_KS9: terminase gp2; RCAP_rcc01984; phage(gi255033734)  2e-89  Click
6 2142702..2143982  PHAGE_Rhodob_RcapNL: HK97 family portal protein; RCAP_rcc01985; phage(gi461474962)  7e-26  Click
7 2143986..2144897  PHAGE_Rhodob_RcapNL: peptidase S49; RCAP_rcc01986; phage(gi461474963)  5e-24  Click
8 2145033..2146376  PHAGE_Rhodob_RcapNL: HK97 family major capsid protein; RCAP_rcc01987; phage(gi461474964)  3e-61  Click
9 2146431..2146991  PHAGE_Ralsto_RSL1: unnamed protein product; RCAP_rcc01988; phage(gi189427106)  3e-08  Click
10 2146991..2147923  PHAGE_Rhodob_RcapNL: phage head-tail adapter protein; RCAP_rcc01989; phage(gi461474968)  3e-13  Click
11 2147920..2148423  PHAGE_Tetras_SI1: hypothetical protein; RCAP_rcc01990; phage(gi472342243)  5e-16  Click
12 2148423..2148572  hypothetical protein; RCAP_rcc01991  N/A  Click
13 2148576..2148944  hypothetical protein; RCAP_rcc01992  N/A  Click
14 2148955..2149395  PHAGE_Strept_phiSASD1: gp14; RCAP_rcc01993; phage(gi298103499)  6e-06  Click
15 2149401..2149757  hypothetical protein; RCAP_rcc01994  N/A  Click
16 2149835..2150071  hypothetical protein; RCAP_rcc01995  N/A  Click
17 2150122..2153001  PHAGE_Pseudo_vB_PaeS_PMG1: tail tape measure protein; RCAP_rcc01996; phage(gi374531664)  2e-56  Click
18 2152998..2153936  PHAGE_Salico_CGphi29: hypothetical protein; RCAP_rcc01997; phage(gi472340191)  3e-15  Click
19 2153936..2154880  PHAGE_Cronob_ESP2949_1: tail fiber; RCAP_rcc01998; phage(gi422935481)  7e-05  Click
20 2154880..2155374  PHAGE_Pectob_ZF40: putative tail-fiber protein; RCAP_rcc01999; phage(gi422936706)  2e-10  Click
21 2155436..2155756  PHAGE_Rhodob_RcapNL: hypothetical protein; RCAP_rcc02000; phage(gi461474983)  1e-43  Click
22 2155758..2156432  PHAGE_Rhodob_RcapNL: peptidoglycan-binding protein; RCAP_rcc02001; phage(gi461474984)  9e-16  Click
23 2156451..2156798  hypothetical protein; RCAP_rcc02002  N/A  Click
24 2156979..2157368  PHAGE_Pseudo_B3: Dam modification methylase; RCAP_rcc02003; phage(gi56692617)  7e-18  Click
25 complement(2157353..2157628)  hypothetical protein; RCAP_rcc02004  N/A  Click
26 2158410..2162267  hypothetical protein; RCAP_rcc02005  N/A  Click
27 2162724..2164274  hypothetical protein; RCAP_rcc02006  N/A  Click
28 2164250..2164265  attR    GATGACGCGCCGCAGC  N/A  Click
29 complement(2164487..2165695)  PHAGE_Sulfit_pCB2047_C: integrase; RCAP_rcc02007; phage(gi472341771)  1e-93  Click
Region 4, total : 17 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2499136..2499152  attL    TGGTCGGGGCGGCGAGA  N/A  Click
2 2499272..2501080  PROPHAGE_Escher_Sakai: putative integrase; RCAP_rcc02326; phage(gi15834496)  2e-25  Click
3 2501158..2502363  PHAGE_Salmon_ST64B: Portal Protein; RCAP_rcc02327; phage(gi23505449)  2e-42  Click
4 2502356..2502676  hypothetical protein; RCAP_rcc02328  N/A  Click
5 2502673..2504184  PHAGE_Salmon_ST64B: Major capsid protein precursor; RCAP_rcc02329; phage(gi23505451)  8e-34  Click
6 2504188..2504826  hypothetical protein; RCAP_rcc02330  N/A  Click
7 2504829..2505173  PHAGE_Xantho_phiL7: P58; RCAP_rcc02331; phage(gi238695645)  1e-18  Click
8 2505166..2505432  hypothetical protein; RCAP_rcc02332  N/A  Click
9 2505815..2506408  hypothetical protein; RCAP_rcc02333  N/A  Click
10 2506600..2506884  PHAGE_Entero_mEp235: head-tail connector II; RCAP_rcc02334; phage(gi428781817)  2e-06  Click
11 2506886..2507365  PHAGE_Strept_6: tail component protein; RCAP_rcc02335; phage(gi93007447)  3e-06  Click
12 2507358..2507780  hypothetical protein; RCAP_rcc02336  N/A  Click
13 2507783..2508094  PHAGE_Rhodob_RcapNL: phage head-tail adapter protein; RCAP_rcc02337; phage(gi461474968)  4e-08  Click
14 2508091..2508732  PHAGE_Azospi_Cd: hypothetical protein APCd_gp13; RCAP_rcc02338; phage(gi168495116)  2e-35  Click
15 complement(2508738..2509142)  hypothetical protein; RCAP_rcc02339  N/A  Click
16 2509205..2509600  PHAGE_Burkho_phiE125: putative terminase (small subunit); RCAP_rcc02340; phage(gi17975162)  5e-08  Click
17 2509604..2511217  PHAGE_Burkho_KS9: terminase gp2; RCAP_rcc02341; phage(gi255033734)  1e-47  Click
18 2511231..2513597  PHAGE_Rhodob_RcapNL: phage tail-related protein; RCAP_rcc02342; phage(gi461474975)  6e-31  Click
19 2516819..2516835  attR    TGGTCGGGGCGGCGAGA  N/A  Click
Region 5, total : 37 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3091373..3091384  attL    GCCCTTGCCGCA  N/A  Click
2 3095260..3095958  PHAGE_Feldma_virus: putative sensor histidine kinase; RCAP_rcc02896; phage(gi197322366)  6e-08  Click
3 3095948..3097042  PHAGE_Ectoca_1: EsV-1-65; RCAP_rcc02897; phage(gi13242537)  8e-09  Click
4 3097032..3098813  PHAGE_Bacill_SPBc2: ABC transporter; RCAP_rcc02898; phage(gi9630145)  1e-27  Click
5 complement(3098786..3099637)  PHAGE_Rhodob_RcapMu: putative tail fiber protein; RCAP_rcc02899; phage(gi356870896)  2e-88  Click
6 3099659..3100015  IS3 family transposase; RCAP_rcc02900  N/A  Click
7 complement(3100567..3101367)  PHAGE_Rhodob_RcapMu: putative tail fiber protein; RCAP_rcc02903; phage(gi356870896)  7e-131  Click
8 complement(3101412..3101543)  PHAGE_Rhodob_RcapMu: putative tail fiber protein; RCAP_rcc02904; phage(gi356870896)  3e-13  Click
9 complement(3101543..3101806)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc02905; phage(gi356870895)  6e-41  Click
10 complement(3101816..3103162)  PHAGE_Pectob_My1: YadA domain-containing protein; RCAP_rcc02906; phage(gi410491156)  5e-05  Click
11 complement(3103164..3106280)  PHAGE_Pseudo_vB_PaeS_PMG1: putative tail protein; RCAP_rcc02907; phage(gi374531670)  1e-44  Click
12 complement(3106277..3106663)  PHAGE_Burkho_BcepGomr: BcepGomrgp21; RCAP_rcc02908; phage(gi146329933)  8e-14  Click
13 complement(3106660..3107187)  PHAGE_Burkho_BcepGomr: BcepGomrgp20; RCAP_rcc02909; phage(gi146329932)  1e-17  Click
14 complement(3107180..3108079)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; RCAP_rcc02910; phage(gi374531665)  2e-07  Click
15 complement(3108082..3110400)  PHAGE_Cronob_ENT39118: phage tail tape measure protein; RCAP_rcc02911; phage(gi431811045)  9e-30  Click
16 complement(3110410..3110550)  hypothetical protein; RCAP_rcc02912  N/A  Click
17 complement(3110574..3111011)  hypothetical protein; RCAP_rcc02913  N/A  Click
18 complement(3111016..3111981)  PHAGE_Rhodob_RcapMu: hypothetical protein; RCAP_rcc02914; phage(gi356870885)  3e-34  Click
19 complement(3111981..3112184)  hypothetical protein; RCAP_rcc02915  N/A  Click
20 complement(3112181..3112618)  PHAGE_Rhodov_RS1: hypothetical protein; RCAP_rcc02916; phage(gi472342919)  1e-19  Click
21 complement(3112618..3113046)  PHAGE_Rhodob_RcapMu: conserved phage protein; RCAP_rcc02917; phage(gi356870882)  1e-16  Click
22 complement(3113166..3113405)  hypothetical protein; RCAP_rcc02918  N/A  Click
23 complement(3113468..3114442)  PHAGE_Pseudo_B3: capsid protein; RCAP_rcc02919; phage(gi56692607)  7e-70  Click
24 complement(3114466..3114849)  PHAGE_Pseudo_B3: hypothetical protein B3ORF37; RCAP_rcc02920; phage(gi56692606)  2e-13  Click
25 complement(3114846..3115946)  PHAGE_Rhodov_RS1: I protein; RCAP_rcc02921; phage(gi472342914)  1e-59  Click
26 complement(3116052..3116507)  PHAGE_Rhodob_RcapMu: virion morphogenesis protein; RCAP_rcc02922; phage(gi356870876)  3e-16  Click
27 complement(3116504..3116740)  hypothetical protein; RCAP_rcc02923  N/A  Click
28 complement(3116844..3117140)  hypothetical protein; RCAP_rcc02924  N/A  Click
29 complement(3116969..3117376)  hypothetical protein; RCAP_rcc02925  N/A  Click
30 complement(3117360..3117695)  hypothetical protein; RCAP_rcc02926  N/A  Click
31 complement(3117695..3117952)  hypothetical protein; RCAP_rcc02927  N/A  Click
32 3118048..3118797  PHAGE_Rhodob_RcapMu: c-repressor; RCAP_rcc02928; phage(gi356870844)  2e-18  Click
33 complement(3120394..3122220)  hypothetical protein; RCAP_rcc02929  N/A  Click
34 complement(3122350..3123186)  hypothetical protein; RCAP_rcc02930  N/A  Click
35 complement(3123527..3123787)  hypothetical protein; RCAP_rcc02931  N/A  Click
36 complement(3123824..3124375)  PHAGE_Entero_2: DNA-invertase; RCAP_rcc02932; phage(gi169936026)  3e-30  Click
37 complement(3125000..3126358)  hypothetical protein; RCAP_rcc02933  N/A  Click
38 3126240..3126251  attR    GCCCTTGCCGCA  N/A  Click
39 complement(3126440..3127831)  phage integrase; RCAP_rcc02934  N/A  Click