Definition Aminobacterium colombiense DSM 12261 chromosome, complete genome.
Accession NC_014011
Length 1,980,592
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 43 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1131055..1131077  attL    TGGTGGGCCTACCTGGACTCGAA  N/A  Click
2 complement(1132495..1132872)  PHAGE_Entero_SP6: gp46; Amico_1100; phage(gi31711688)  3e-20  Click
3 complement(1132947..1133543)  PHAGE_Pectob_ZF40: putative tail-fiber protein; Amico_1101; phage(gi422936706)  3e-09  Click
4 complement(1133677..1135362)  PHAGE_Clostr_phiMMP02: tail fiber; Amico_1102; phage(gi414090390)  3e-45  Click
5 complement(1135374..1136030)  PROPHAGE_Salmon_Ty2: putative phage tail protein; Amico_1103; phage(gi29143753)  2e-14  Click
6 complement(1136023..1137132)  PHAGE_Burkho_BcepMu: gp50; Amico_1104; phage(gi48696960)  1e-51  Click
7 complement(1137119..1137439)  GPW/gp25 family protein; Amico_1105  N/A  Click
8 complement(1137443..1137832)  PHAGE_Burkho_BcepMu: gp45; Amico_1106; phage(gi48696955)  2e-05  Click
9 complement(1137839..1138132)  PHAGE_Campyl_CPX: hypothetical protein; Amico_1107; phage(gi371671041)  5e-22  Click
10 complement(1138145..1138597)  PHAGE_Burkho_BcepMu: gp48; Amico_1108; phage(gi48696958)  1e-13  Click
11 complement(1138597..1139610)  PHAGE_Burkho_BcepMu: gp47; Amico_1109; phage(gi48696957)  7e-36  Click
12 complement(1139607..1139825)  PHAGE_Burkho_BcepMu: gp46; Amico_1110; phage(gi48696956)  3e-05  Click
13 complement(1139818..1142250)  PHAGE_Vibrio_vB_VpaM_MAR: tail length tape-measure protein; Amico_1111; phage(gi428782750)  2e-107  Click
14 complement(1142401..1142682)  hypothetical protein; Amico_1112  N/A  Click
15 complement(1142696..1143220)  PHAGE_Burkho_ST79: phage major tail tube protein; Amico_1113; phage(gi509141647)  7e-09  Click
16 complement(1143233..1144681)  PHAGE_Burkho_BcepMu: gp39; Amico_1114; phage(gi48696949)  5e-38  Click
17 complement(1144671..1144955)  hypothetical protein; Amico_1115  N/A  Click
18 complement(1144956..1145399)  hypothetical protein; Amico_1116  N/A  Click
19 complement(1145400..1145954)  hypothetical protein; Amico_1117  N/A  Click
20 complement(1145951..1146277)  hypothetical protein; Amico_1118  N/A  Click
21 complement(1146281..1146616)  PHAGE_Stenot_S1: putative recombinase; Amico_1119; phage(gi213163907)  3e-11  Click
22 complement(1146632..1148557)  PHAGE_Stenot_S1: putative major head protein; Amico_1120; phage(gi213163906)  1e-61  Click
23 complement(1148538..1150022)  PHAGE_Synech_S_CBS1: lambda-like phage portal protein; Amico_1121; phage(gi356870797)  5e-63  Click
24 complement(1150016..1150204)  hypothetical protein; Amico_1122  N/A  Click
25 complement(1150223..1152088)  PHAGE_Synech_S_CBS3: large terminase subunit; Amico_1123; phage(gi331028008)  3e-52  Click
26 complement(1152081..1152605)  hypothetical protein; Amico_1124  N/A  Click
27 complement(1152964..1153572)  PHAGE_Clostr_phiCD6356: putative site-specific recombinase; Amico_1125; phage(gi326536904)  5e-30  Click
28 complement(1153569..1153772)  hypothetical protein; Amico_1126  N/A  Click
29 complement(1154151..1154645)  hypothetical protein; Amico_1127  N/A  Click
30 complement(1154743..1154844)  hypothetical protein; Amico_1128  N/A  Click
31 complement(1154837..1155028)  hypothetical protein; Amico_1129  N/A  Click
32 complement(1155245..1156177)  PHAGE_Bacill_IEBH: DNA replication protein DnaC; Amico_1131; phage(gi197261519)  1e-21  Click
33 complement(1156174..1157043)  PHAGE_Clostr_phiCD6356: putative phage replication protein; Amico_1132; phage(gi326536888)  6e-09  Click
34 complement(1157073..1157510)  PHAGE_Bovine_adenovirus_A: E4 ORFA; Amico_1133; phage(gi52801706)  1e-26  Click
35 complement(1157600..1157959)  hypothetical protein; Amico_1134  N/A  Click
36 complement(1157970..1158113)  hypothetical protein; Amico_1135  N/A  Click
37 complement(1158217..1158990)  PHAGE_Paenib_phiIBB_Pl23: antirepressor protein; Amico_1136; phage(gi526245052)  4e-70  Click
38 complement(1158987..1159151)  hypothetical protein; Amico_1137  N/A  Click
39 complement(1159139..1159339)  hypothetical protein; Amico_1138  N/A  Click
40 complement(1159342..1159566)  hypothetical protein; Amico_1139  N/A  Click
41 complement(1159556..1159831)  hypothetical protein; Amico_1140  N/A  Click
42 complement(1160231..1160491)  transcriptional regulator, XRE family; Amico_1141  N/A  Click
43 1160642..1161322  PHAGE_Paenib_phiIBB_Pl23: SOS-response repressor and protease LexA; Amico_1142; phage(gi526245044)  8e-08  Click
44 1161394..1162812  PHAGE_Staphy_X2: ORF015; Amico_1143; phage(gi66394685)  2e-09  Click
45 1170131..1170153  attR    TGGTGGGCCTACCTGGACTCGAA  N/A  Click
Region 2, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1162377..1162390  attL    AAGCCTACGAAAAG  N/A  Click
2 complement(1168837..1169964)  PHAGE_Stenot_S1: putative integrase; Amico_1151; phage(gi213163927)  1e-75  Click
3 complement(1170131..1170207)  tRNA  N/A  Click
4 complement(1170315..1170497)  4Fe-4S ferredoxin iron-sulfur binding domain protein; Amico_1152  N/A  Click
5 complement(1170577..1171368)  phosphoribosyltransferase; Amico_1153  N/A  Click
6 complement(1171365..1172240)  4-(cytidine 5'-diphospho)-2-C-methyl-D- erythritol kinase; Amico_1154  N/A  Click
7 complement(1172324..1172563)  hypothetical protein; Amico_1155  N/A  Click
8 complement(1172660..1174600)  PHAGE_Cafete_BV_PW1: putative eIF-2gamma; Amico_1156; phage(gi310831469)  9e-20  Click
9 complement(1174593..1175999)  L-seryl-tRNA selenium transferase; Amico_1157  N/A  Click
10 1176225..1176812  selenium metabolism protein YedF; Amico_1158  N/A  Click
11 complement(1176838..1177410)  hypothetical protein; Amico_1159  N/A  Click
12 complement(1177452..1178564)  oxygen-independent coproporphyrinogen III oxidase; Amico_1160  N/A  Click
13 complement(1178561..1180372)  PHAGE_Lausan: putative translation elongation factor 1-alpha; Amico_1161; phage(gi327409596)  4e-06  Click
14 1180723..1181442  PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; Amico_1162; phage(gi326784002)  2e-46  Click
15 1181443..1181694  PHAGE_Prochl_Syn33: 5,5-phosphoribosylformylglycinamide amidotransferase; Amico_1163; phage(gi326783296)  7e-06  Click
16 1181697..1182404  phosphoribosylformylglycinamidine synthase I; Amico_1164  N/A  Click
17 1182401..1184557  PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; Amico_1165; phage(gi149882852)  2e-137  Click
18 1184558..1185931  PHAGE_Parame_bursaria_Chlorella_virus_1: Glutamine:fructose-6-phosphate amidotransferase; Amico_1166; phage(gi340025710)  3e-21  Click
19 1185915..1186907  PHAGE_Prochl_P_SSM2: phosphoribosylaminoimidazole synthetase; Amico_1167; phage(gi61806048)  9e-65  Click
20 1186910..1187515  PHAGE_Synech_S_SKS1: cyanobacterial phosphoribosylglycinamide formyltransferase; Amico_1168; phage(gi472340960)  3e-18  Click
21 1187502..1189031  PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; Amico_1169; phage(gi61806062)  3e-49  Click
22 1188364..1188377  attR    AAGCCTACGAAAAG  N/A  Click
23 1189044..1190315  phosphoribosylamine/glycine ligase; Amico_1170  N/A  Click
24 1190327..1190872  phosphoribosylaminoimidazole carboxylase, catalytic subunit; Amico_1171  N/A  Click
25 complement(1190884..1191081)  hypothetical protein; Amico_1172  N/A  Click
26 complement(1191216..1191986)  PHAGE_Cafete_BV_PW1: putative ABC-type amino acid transporter; Amico_1173; phage(gi310831221)  9e-06  Click