Definition Staphylococcus lugdunensis HKU09-01 chromosome, complete genome.
Accession NC_013893
Length 2,658,366
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 315330..315341  attL    GTATCTTTTTTA  N/A  Click
2 315897..317876  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; SLGD_00301; phage(gi9631364)  4e-08  Click
3 complement(318382..320388)  PHAGE_Staphy_vB_SauM_Romulus: tail lysin; SLGD_00302; phage(gi472437801)  2e-13  Click
4 320697..323534  PHAGE_Lactob_1: putative tail fibre protein; SLGD_00303; phage(gi226377752)  1e-06  Click
5 complement(323597..324085)  PHAGE_Helico_2: hypothetical protein; SLGD_00304; phage(gi370703021)  5e-06  Click
6 324426..324578  hypothetical protein; SLGD_00305  N/A  Click
7 complement(324648..324932)  hypothetical protein; SLGD_00306  N/A  Click
8 325117..326220  PHAGE_Clostr_phiC2: putative integrase; SLGD_00307; phage(gi134287379)  2e-16  Click
9 326231..328303  PHAGE_Staphy_phi5967PVL: integrase; SLGD_00308; phage(gi431810245)  3e-06  Click
10 329886..329897  attR    GTATCTTTTTTA  N/A  Click
Region 2, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2064407..2064419  attL    TGTTAATTTAGAA  N/A  Click
2 complement(2077277..2077849)  PHAGE_Staphy_PT1028: ORF009; SLGD_01995; phage(gi66395173)  7e-88  Click
3 complement(2078075..2078596)  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; SLGD_01996; phage(gi9631364)  6e-07  Click
4 complement(2078607..2078840)  hypothetical protein; SLGD_01997  N/A  Click
5 complement(2078854..2079195)  PHAGE_Staphy_PT1028: ORF015; SLGD_01998; phage(gi66395179)  2e-60  Click
6 complement(2079542..2080183)  PHAGE_Staphy_PT1028: ORF008; SLGD_01999; phage(gi66395172)  3e-108  Click
7 complement(2080180..2080464)  PHAGE_Staphy_StB27: hypothetical protein; SLGD_02000; phage(gi431809698)  3e-10  Click
8 complement(2080466..2080828)  PHAGE_Staphy_PT1028: ORF013; SLGD_02001; phage(gi66395177)  2e-12  Click
9 complement(2081114..2082583)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp39; SLGD_02002; phage(gi156603988)  3e-80  Click
10 complement(2082600..2083469)  PHAGE_Staphy_PT1028: ORF003; SLGD_02003; phage(gi66395167)  5e-138  Click
11 complement(2083536..2083862)  PHAGE_Staphy_PT1028: ORF016; SLGD_02004; phage(gi66395180)  2e-44  Click
12 complement(2083865..2084074)  PHAGE_Staphy_PT1028: ORF021; SLGD_02005; phage(gi66395185)  5e-33  Click
13 complement(2084067..2084213)  hypothetical protein; SLGD_02006  N/A  Click
14 complement(2084225..2084497)  PHAGE_Staphy_PT1028: ORF019; SLGD_02007; phage(gi66395183)  2e-42  Click
15 complement(2084498..2084710)  PHAGE_Staphy_PT1028: ORF020; SLGD_02008; phage(gi66395184)  2e-18  Click
16 2084854..2085555  PHAGE_Staphy_PT1028: ORF006; SLGD_02009; phage(gi66395170)  1e-17  Click
17 2085261..2085273  attR    TGTTAATTTAGAA  N/A  Click
18 2085570..2086790  PHAGE_Staphy_PT1028: ORF002; SLGD_02010; phage(gi66395166)  1e-103  Click
19 complement(2086933..2087745)  Methionine ABC transporter substrate-binding protein; SLGD_02011  N/A  Click
20 complement(2087767..2088462)  Methionine ABC transporter permease protein; SLGD_02012  N/A  Click
21 complement(2088455..2089480)  PHAGE_Plankt_PaV_LD: ABC transporter; SLGD_02013; phage(gi371496158)  1e-29  Click
Region 3, total : 58 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2312214..2312810)  PHAGE_Staphy_P954: hypothetical protein; SLGD_02233; phage(gi257136425)  5e-41  Click
2 complement(2312837..2313013)  PHAGE_Staphy_P954: hypothetical protein; SLGD_02234; phage(gi257136424)  6e-09  Click
3 complement(2313306..2314772)  PHAGE_Staphy_JD007: autolysin (n-acetylmuramoyl-l-alanine amidase); SLGD_02235; phage(gi428783048)  5e-158  Click
4 complement(2314775..2315224)  PHAGE_Staphy_StB20: holin; SLGD_02236; phage(gi431809792)  4e-41  Click
5 complement(2315281..2317842)  PHAGE_Staphy_vB_SepiS_phiIPLA5: tail fiber protein; SLGD_02237; phage(gi399528920)  2e-76  Click
6 2316362..2316374  attL    ATAAATTTACTAG  N/A  Click
7 complement(2317990..2318286)  PHAGE_Staphy_PH15: hypothetical protein ph23; SLGD_02238; phage(gi119967855)  5e-41  Click
8 complement(2318319..2318465)  hypothetical protein; SLGD_02239  N/A  Click
9 complement(2318462..2320645)  PHAGE_Staphy_PH15: conserved phage protein; SLGD_02240; phage(gi119967850)  3e-69  Click
10 complement(2320664..2321761)  PHAGE_Clostr_phiCD38_2: tail fiber protein; SLGD_02241; phage(gi333798127)  8e-06  Click
11 complement(2321778..2322731)  PHAGE_Staphy_phiMR25: putative minor tail protein; SLGD_02242; phage(gi189427179)  6e-45  Click
12 complement(2322752..2326414)  PHAGE_Staphy_69: ORF001; SLGD_02243; phage(gi66395294)  0.0  Click
13 complement(2326421..2326786)  PHAGE_Staphy_TEM123: hypothetical protein; SLGD_02244; phage(gi388570339)  5e-25  Click
14 complement(2326831..2327196)  PHAGE_Staphy_TEM123: hypothetical protein; SLGD_02245; phage(gi388570340)  2e-21  Click
15 complement(2327271..2327834)  PHAGE_Staphy_TEM123: major tail protein; SLGD_02246; phage(gi388570341)  2e-37  Click
16 complement(2327852..2328238)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp46; SLGD_02247; phage(gi215401216)  1e-24  Click
17 complement(2328249..2328590)  PHAGE_Staphy_TEM123: hypothetical protein; SLGD_02248; phage(gi388570343)  2e-31  Click
18 complement(2328590..2328766)  PHAGE_Staphy_phiNM: hypothetical protein SAPPV1_gp46; SLGD_02249; phage(gi118430770)  2e-09  Click
19 complement(2328889..2329218)  PHAGE_Staphy_TEM123: head-tail connector proteins; SLGD_02250; phage(gi388570344)  4e-28  Click
20 complement(2329228..2329467)  PHAGE_Staphy_69: ORF055; SLGD_02251; phage(gi66395339)  2e-07  Click
21 complement(2329482..2330387)  PHAGE_Staphy_StB27: major head protein; SLGD_02252; phage(gi431809710)  2e-119  Click
22 complement(2330407..2330997)  PHAGE_Staphy_StB27: scaffold protein; SLGD_02253; phage(gi431809709)  1e-61  Click
23 complement(2331100..2331234)  hypothetical protein; SLGD_02254  N/A  Click
24 complement(2331197..2331319)  hypothetical protein; SLGD_02255  N/A  Click
25 complement(2331316..2332281)  PHAGE_Staphy_StB27: minor head protein; SLGD_02256; phage(gi431809708)  4e-85  Click
26 complement(2332268..2333719)  PHAGE_Staphy_StB27: portal protein; SLGD_02257; phage(gi431809707)  0.0  Click
27 complement(2333731..2335005)  PHAGE_Staphy_187: ORF005; SLGD_02258; phage(gi66395220)  0.0  Click
28 complement(2334992..2335420)  PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_28; SLGD_02259; phage(gi13487829)  9e-26  Click
29 complement(2335722..2336138)  PHAGE_Staphy_PH15: putative regulator RinA; SLGD_02260; phage(gi119967900)  3e-65  Click
30 complement(2336135..2336284)  PHAGE_Staphy_PH15: hypothetical protein ph66; SLGD_02261; phage(gi119967898)  1e-12  Click
31 complement(2336281..2336463)  PHAGE_Staphy_PH15: putative regulator RinB; SLGD_02262; phage(gi119967897)  1e-13  Click
32 complement(2336456..2336605)  PHAGE_Staphy_phiN315: hypothetical protein SA1782; SLGD_02263; phage(gi30043960)  7e-05  Click
33 complement(2336645..2337172)  PHAGE_Staphy_TEM123: dUTPase; SLGD_02264; phage(gi388570353)  4e-84  Click
34 complement(2337172..2337324)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp30; SLGD_02265; phage(gi156603979)  4e-10  Click
35 complement(2337328..2337750)  PHAGE_Staphy_PH15: hypothetical protein ph57; SLGD_02266; phage(gi119967889)  2e-29  Click
36 complement(2337756..2338007)  hypothetical protein; SLGD_02267  N/A  Click
37 complement(2338010..2338324)  hypothetical protein; SLGD_02268  N/A  Click
38 complement(2338324..2338728)  PHAGE_Staphy_PH15: putative endodeoxyribonuclease; SLGD_02269; phage(gi119967886)  6e-53  Click
39 complement(2338737..2338979)  PHAGE_Staphy_StB20: hypothetical protein; SLGD_02270; phage(gi431809749)  6e-21  Click
40 complement(2338969..2339106)  PHAGE_Staphy_P954: hypothetical protein; SLGD_02271; phage(gi257136379)  1e-05  Click
41 complement(2339193..2340428)  PHAGE_Staphy_PH15: putative helicase; SLGD_02272; phage(gi119967883)  0.0  Click
42 complement(2340421..2340780)  PHAGE_Staphy_PH15: conserved phage protein; SLGD_02273; phage(gi119967882)  3e-55  Click
43 complement(2340780..2341172)  PHAGE_Staphy_PH15: hypothetical protein ph49; SLGD_02274; phage(gi119967881)  2e-58  Click
44 complement(2341272..2341571)  PHAGE_Staphy_StB20: replication initiation protein; SLGD_02275; phage(gi431809745)  2e-49  Click
45 complement(2341649..2342089)  PHAGE_Staphy_phi5967PVL: ssDNA-binding protein; SLGD_02276; phage(gi431810257)  4e-58  Click
46 complement(2342086..2342760)  PHAGE_Staphy_vB_SepiS_phiIPLA7: erf superfamily protein; SLGD_02277; phage(gi399529156)  6e-114  Click
47 complement(2342761..2343246)  PHAGE_Deep_s_D6E: gp157-like protein; SLGD_02278; phage(gi423262358)  6e-30  Click
48 complement(2343558..2343671)  PHAGE_Staphy_PH15: hypothetical protein ph42; SLGD_02279; phage(gi119967874)  2e-08  Click
49 2343722..2344324  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp06; SLGD_02280; phage(gi215401176)  4e-102  Click
50 complement(2344370..2345122)  PHAGE_Staphy_phi5967PVL: putative antirepressor; SLGD_02281; phage(gi431810250)  4e-140  Click
51 2345187..2345423  PHAGE_Staphy_phiNM: hypothetical protein SAPPV1_gp07; SLGD_02282; phage(gi118430731)  2e-36  Click
52 complement(2345416..2345577)  PHAGE_Staphy_phiNM: hypothetical protein SAPPV1_gp06; SLGD_02283; phage(gi118430730)  1e-22  Click
53 complement(2345593..2345829)  PHAGE_Staphy_phiMR11: putative transcriptional regulator protein; SLGD_02284; phage(gi162290112)  3e-35  Click
54 2345981..2346295  PHAGE_Staphy_phiSLT: repressor; SLGD_02285; phage(gi12719398)  1e-52  Click
55 2346307..2346771  PHAGE_Staphy_PH15: conserved phage protein; SLGD_02286; phage(gi119967866)  8e-72  Click
56 2346819..2346962  PHAGE_Staphy_37: ORF133; SLGD_02287; phage(gi66395802)  3e-09  Click
57 2347095..2347277  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp04; SLGD_02288; phage(gi156603953)  3e-10  Click
58 2347431..2348471  PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; SLGD_02289; phage(gi134287370)  6e-09  Click
59 2348394..2348406  attR    ATAAATTTACTAG  N/A  Click
60 2348540..2349922  PHAGE_Staphy_PH15: putative site-specific recombinase; SLGD_02290; phage(gi119967863)  1e-178  Click