Definition Lactobacillus johnsonii FI9785 chromosome, complete genome.
Accession NC_013504
Length 1,755,993
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 53 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(726891..729158)  PHAGE_Parame_AR158: hypothetical protein AR158_C785L; FI9785_799; phage(gi157953975)  4e-43  Click
2 729280..730128  transcriptional regulator, LysR family; FI9785_800  N/A  Click
3 730408..730495  tRNA  N/A  Click
4 730483..730496  attL    CCTGTACTCTCCTT  N/A  Click
5 complement(730586..731758)  PHAGE_Lactob_Lj928: putative integrase; FI9785_801; phage(gi41179288)  0.0  Click
6 complement(731921..732493)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1459; FI9785_802; phage(gi41179294)  2e-91  Click
7 complement(732545..733348)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1460; FI9785_803; phage(gi41179293)  9e-16  Click
8 complement(733361..733765)  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1458; FI9785_804; phage(gi41179295)  4e-76  Click
9 complement(733755..734084)  PHAGE_Lactob_Lj928: putative cI repressor; FI9785_805; phage(gi41179296)  3e-18  Click
10 734370..734579  hypothetical protein; FI9785_806  N/A  Click
11 734585..734794  PHAGE_Lactob_Lj965: hypothetical protein Ljo_1452b; FI9785_807; phage(gi41179256)  1e-32  Click
12 734950..735078  hypothetical protein; FI9785_808  N/A  Click
13 735080..735556  PHAGE_Entero_HK140: hypothetical protein; FI9785_809; phage(gi428781979)  1e-16  Click
14 735572..735793  hypothetical protein; FI9785_810  N/A  Click
15 735911..737179  PHAGE_Strept_5: putative helicase; FI9785_812; phage(gi28876425)  2e-93  Click
16 737176..737514  hypothetical protein; FI9785_813  N/A  Click
17 737518..738285  PHAGE_Strept_PH15: putative NTP-binding protein; FI9785_814; phage(gi190151434)  8e-59  Click
18 738285..738872  PHAGE_Strept_PH15: hypothetical protein phiPH15_gp20; FI9785_815; phage(gi190151435)  3e-13  Click
19 738887..739195  hypothetical protein; FI9785_816  N/A  Click
20 739198..739998  PHAGE_Strept_O1205: hypothetical protein O1205p12; FI9785_817; phage(gi23455860)  3e-57  Click
21 739995..741314  PHAGE_Strept_PH15: hypothetical protein phiPH15_gp22; FI9785_818; phage(gi190151437)  4e-69  Click
22 741773..742012  hypothetical protein; FI9785_819  N/A  Click
23 742014..742211  hypothetical protein; FI9785_820  N/A  Click
24 742212..742463  hypothetical protein; FI9785_821  N/A  Click
25 742474..742644  hypothetical protein; FI9785_822  N/A  Click
26 742645..742980  PHAGE_Lactob_AQ113: phage protein-Restriction nuclease superfamily; FI9785_823; phage(gi446730281)  1e-50  Click
27 742992..743486  PHAGE_Lactob_phiadh: hypothetical protein phiadhp36; FI9785_824; phage(gi9633036)  6e-58  Click
28 743502..743951  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1443; FI9785_825; phage(gi41179310)  2e-54  Click
29 744143..744213  tRNA  N/A  Click
30 744343..744771  PHAGE_Strept_6: putative terminase small subunit; FI9785_826; phage(gi28876466)  8e-35  Click
31 744900..746171  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1439; FI9785_827; phage(gi41179314)  0.0  Click
32 746184..747590  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1438; FI9785_828; phage(gi41179315)  6e-97  Click
33 747574..748986  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1437; FI9785_829; phage(gi41179316)  1e-46  Click
34 748988..749221  hypothetical protein; FI9785_830  N/A  Click
35 749368..749928  PHAGE_Staphy_StB27: scaffold protein; FI9785_831; phage(gi431809709)  1e-29  Click
36 749946..750812  PHAGE_Staphy_StB27: major head protein; FI9785_832; phage(gi431809710)  5e-43  Click
37 750970..751326  PHAGE_Lactob_Lj928: hypothetical protein Ljo_1432; FI9785_834; phage(gi41179321)  4e-22  Click
38 751323..751640  PHAGE_Lactoc_1: ORF39; FI9785_835; phage(gi13786570)  5e-06  Click
39 751627..752025  PHAGE_Entero_phiEf11: phage protein HK97; FI9785_836; phage(gi282598738)  3e-18  Click
40 752018..752404  PHAGE_Strept_2972: hypothetical protein SPV2972_gp14; FI9785_837; phage(gi66391773)  2e-08  Click
41 752418..752993  PHAGE_Lactoc_ul36: major tail protein; FI9785_838; phage(gi21716118)  6e-17  Click
42 753039..753368  PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_44; FI9785_839; phage(gi13487845)  2e-14  Click
43 753467..753814  PHAGE_Lactoc_ul36: hypothetical protein ul36_49; FI9785_840; phage(gi21716120)  5e-09  Click
44 753804..757409  PHAGE_Pedioc_clP1: tape measure protein; FI9785_841; phage(gi356870790)  3e-163  Click
45 757422..758213  PHAGE_Lactoc_ul36: structural protein; FI9785_842; phage(gi21716122)  1e-12  Click
46 758210..763630  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0324; FI9785_843; phage(gi41179262)  4e-145  Click
47 763623..763778  hypothetical protein; FI9785_844  N/A  Click
48 763759..764022  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0325; FI9785_845; phage(gi41179251)  6e-37  Click
49 764022..764432  PHAGE_Lactob_Nu: putative holin; FI9785_846; phage(gi77999998)  2e-10  Click
50 764442..764699  PHAGE_Lactob_Lj965: hypothetical protein Ljo_0327; FI9785_847; phage(gi41179253)  2e-38  Click
51 764692..765036  PHAGE_Lactob_Lj928: putative holin; FI9785_848; phage(gi41179336)  1e-06  Click
52 765029..765970  PHAGE_Lactob_Lj928: putative lysin; FI9785_849; phage(gi41179337)  1e-100  Click
53 766130..766143  attR    CCTGTACTCTCCTT  N/A  Click
54 766330..766914  hypothetical protein; FI9785_850  N/A  Click
55 767091..768377  hypothetical protein; FI9785_851  N/A  Click
56 768491..768772  hypothetical protein; FI9785_852  N/A  Click
57 768839..770461  PHAGE_Parame_AR158: hypothetical protein AR158_C788L; FI9785_853; phage(gi157953978)  4e-17  Click
Region 2, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1021734..1023128)  PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; FI9785_1094; phage(gi15834112)  4e-116  Click
2 complement(1023139..1023663)  PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; FI9785_1095; phage(gi15834113)  2e-40  Click
3 1023372..1023385  attL    TTACCATAGCTTGT  N/A  Click
4 complement(1023668..1024591)  PHAGE_Thermu_26: phage XerD-like integrase; FI9785_1096; phage(gi157265417)  2e-15  Click
5 complement(1024594..1025910)  tRNA:m(5)U-54 methyltransferase; FI9785_1097  N/A  Click
6 complement(1026008..1028089)  PHAGE_Acanth_mimivirus: DNA topoisomerase 1; FI9785_1098; phage(gi311977597)  2e-103  Click
7 complement(1028155..1029000)  DNA protecting protein DprA; FI9785_1099  N/A  Click
8 complement(1029053..1029805)  PHAGE_Cafete_BV_PW1: putative ribonuclease HII; FI9785_1100; phage(gi310831397)  2e-27  Click
9 complement(1029802..1030641)  hypothetical protein; FI9785_1101  N/A  Click
10 complement(1030644..1032095)  PHAGE_Thermo_THSA_485A: glycoside hydrolase family 25; FI9785_1102; phage(gi397912616)  7e-08  Click
11 1031086..1031099  attR    TTACCATAGCTTGT  N/A  Click
Region 3, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1080702..1081499  putative integrase-recombinase; FI9785_1144  N/A  Click
2 complement(1081528..1082169)  hypothetical protein; FI9785_1145  N/A  Click
3 1082486..1082497  attL    TTTTAAAAATAA  N/A  Click
4 1082721..1082897  hypothetical protein; FI9785_1146  N/A  Click
5 1082861..1083106  hypothetical protein; FI9785_1147  N/A  Click
6 1083206..1083469  hypothetical protein; FI9785_1148  N/A  Click
7 complement(1083711..1084544)  PHAGE_Equid_8: envelope glycoprotein J; FI9785_1150; phage(gi386522795)  4e-07  Click
8 complement(1084767..1085147)  hypothetical protein; FI9785_1151  N/A  Click
9 complement(1085236..1085637)  hypothetical protein; FI9785_1152  N/A  Click
10 1085841..1086500  PHAGE_Helico_2: hypothetical protein; FI9785_1153; phage(gi370703021)  7e-08  Click
11 complement(1086530..1086970)  PHAGE_Aeromo_phiAS4: hypothetical protein; FI9785_1154; phage(gi310722392)  5e-06  Click
12 1087122..1087967  PHAGE_Helico_2: hypothetical protein; FI9785_1155; phage(gi370703021)  2e-05  Click
13 complement(1088032..1088802)  PHAGE_Lactob_KC5a: hypothetical protein; FI9785_1156; phage(gi90592577)  2e-07  Click
14 complement(1089887..1090351)  PHAGE_Lactob_KC5a: lysin; FI9785_1157; phage(gi90592635)  2e-50  Click
15 complement(1090484..1090645)  PHAGE_Lactob_KC5a: lysin; FI9785_1158; phage(gi90592635)  2e-20  Click
16 complement(1090689..1091099)  PHAGE_Lactob_KC5a: putative phage minor capsid protein; FI9785_1159; phage(gi90592613)  5e-59  Click
17 complement(1091245..1091640)  hypothetical protein; FI9785_1160  N/A  Click
18 complement(1091633..1093279)  PHAGE_Lactob_KC5a: putative phage head protein; FI9785_1161; phage(gi90592612)  3e-136  Click
19 1093675..1094775  PHAGE_Lactob_KC5a: integrase; FI9785_1163; phage(gi90592576)  3e-129  Click
20 1096052..1096063  attR    TTTTAAAAATAA  N/A  Click