Definition Staphylococcus aureus subsp. aureus ED98, complete genome.
Accession NC_013450
Length 2,824,404
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 828015..829040  PHAGE_Plankt_PaV_LD: ABC transporter; SAAV_0784; phage(gi371496158)  2e-30  Click
2 829033..829728  ABC transporter, permease protein; SAAV_0785  N/A  Click
3 829746..830567  ABC transporter, substrate-binding protein; SAAV_0786  N/A  Click
4 830549..830567  attL    AGTTATTCCTGCTAAATAA  N/A  Click
5 complement(830711..831931)  PHAGE_Staphy_PT1028: ORF002; SAAV_0787; phage(gi66395166)  2e-105  Click
6 complement(831945..833333)  PHAGE_Melano_entomopoxvirus: ORF MSV261 leucine rich repeat gene family protein, similar to Amsacta moorei entomopoxvirus Q3 ORF SW:P28854; SAAV_0788; phage(gi9631422)  2e-09  Click
7 complement(833360..833932)  PHAGE_Staphy_PT1028: ORF006; SAAV_0789; phage(gi66395170)  1e-14  Click
8 834104..834325  PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; SAAV_0790; phage(gi397912660)  3e-05  Click
9 834326..834598  PHAGE_Staphy_PT1028: ORF019; SAAV_0791; phage(gi66395183)  7e-40  Click
10 834610..834756  pathogenicity island protein; SAAV_0792  N/A  Click
11 834749..834961  PHAGE_Staphy_phiMR25: hypothetical protein; SAAV_0793; phage(gi189427130)  6e-09  Click
12 834963..835322  pathogenicity island protein; SAAV_0794  N/A  Click
13 835323..835640  PHAGE_Staphy_PT1028: ORF016; SAAV_0795; phage(gi66395180)  9e-21  Click
14 835704..836573  PHAGE_Staphy_PT1028: ORF003; SAAV_0796; phage(gi66395167)  3e-161  Click
15 836587..838296  PHAGE_Staphy_PT1028: ORF001; SAAV_0797; phage(gi66395165)  0.0  Click
16 838626..839006  PHAGE_Staphy_PT1028: ORF013; SAAV_0798; phage(gi66395177)  5e-70  Click
17 839003..839644  PHAGE_Staphy_PT1028: ORF008; SAAV_0799; phage(gi66395172)  6e-112  Click
18 839991..840332  PHAGE_Staphy_PT1028: ORF015; SAAV_0800; phage(gi66395179)  2e-60  Click
19 840344..840922  PHAGE_Campyl_CP30A: recombination endonuclease; SAAV_0801; phage(gi410493113)  3e-05  Click
20 840940..841158  pathogenicity island protein ORF8; SAAV_0802  N/A  Click
21 841209..841736  PHAGE_Staphy_PT1028: ORF010; SAAV_0803; phage(gi66395174)  1e-92  Click
22 841739..842080  PHAGE_Staphy_PT1028: ORF014; SAAV_0804; phage(gi66395178)  3e-53  Click
23 842077..842646  PHAGE_Staphy_PT1028: ORF009; phage; phage terminase family protein; SAAV_0805(gi66395173)  7e-104  Click
24 846109..846127  attR    AGTTATTCCTGCTAAATAA  N/A  Click
Region 2, total : 61 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 853657..853676  attL    TATTGATACCATTTTGATAC  N/A  Click
2 complement(853680..854729)  PHAGE_Staphy_phiETA2: integrase; SAAV_0818; phage(gi122891715)  0.0  Click
3 complement(854790..855758)  DNA adenine methylase; SAAV_0819  N/A  Click
4 complement(855889..856452)  PHAGE_Microm_12T: site-specific DNA-methyltransferase CviBI; SAAV_0820; phage(gi472342749)  3e-22  Click
5 complement(856541..856870)  PHAGE_Staphy_phiETA: hypothetical protein phiETA_04; SAAV_0821; phage(gi17426232)  2e-27  Click
6 complement(856882..857598)  PHAGE_Staphy_phiETA: similar to phage phi PVL repressor; SAAV_0822; phage(gi17426234)  1e-123  Click
7 857762..858004  PHAGE_Staphy_phiPVL108: putative cro-like repressor; SAAV_0823; phage(gi119443659)  6e-41  Click
8 858017..858460  PHAGE_Staphy_CN125: hypothetical protein CUR005; SAAV_0824; phage(gi239507366)  2e-74  Click
9 858475..858618  PHAGE_Staphy_71: ORF132; SAAV_0825; phage(gi66396109)  1e-19  Click
10 complement(858628..859230)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp06; SAAV_0826; phage(gi215401176)  6e-106  Click
11 859860..860612  PHAGE_Staphy_CN125: anti-repressor; SAAV_0827; phage(gi239507368)  5e-141  Click
12 860653..860943  PHAGE_Bacill_Finn: hypothetical protein; SAAV_0828; phage(gi460042246)  4e-10  Click
13 complement(860955..861125)  hypothetical protein; SAAV_0829  N/A  Click
14 861196..861417  PHAGE_Staphy_88: ORF071; SAAV_0830; phage(gi66396392)  1e-34  Click
15 861665..861925  PHAGE_Staphy_26: hypothetical protein SAP26_gp39; SAAV_0831; phage(gi304443277)  8e-46  Click
16 861933..862169  PHAGE_Staphy_StB27: hypothetical protein; SAAV_0832; phage(gi431809688)  7e-19  Click
17 862162..862641  PHAGE_Staphy_phiPVL108: hypothetical protein SABPV108_gp17; SAAV_0833; phage(gi119443669)  8e-85  Click
18 862641..863279  PHAGE_Staphy_phiPV83: hypothetical protein phiPV83p17; SAAV_0834; phage(gi9635694)  6e-118  Click
19 863279..863704  PHAGE_Staphy_IPLA88: putative ssDNA binding protein; SAAV_0835; phage(gi215401185)  1e-74  Click
20 864389..864508  PHAGE_Staphy_26: hypothetical protein SAP26_gp44; SAAV_0836; phage(gi304443282)  3e-16  Click
21 complement(864502..865152)  PHAGE_Staphy_26: hypothetical protein SAP26_gp45; SAAV_0837; phage(gi304443283)  2e-121  Click
22 865207..865977  PHAGE_Staphy_26: hypothetical protein SAP26_gp46; SAAV_0838; phage(gi304443284)  2e-150  Click
23 865987..866760  PHAGE_Staphy_CN125: hypothetical protein CUR020; SAAV_0839; phage(gi239507381)  1e-147  Click
24 866754..866912  PHAGE_Staphy_CN125: hypothetical protein CUR021; SAAV_0840; phage(gi239507382)  2e-23  Click
25 867156..867473  PHAGE_Staphy_phiMR11: putative resolvase; SAAV_0841; phage(gi162290129)  2e-56  Click
26 867563..867748  PHAGE_Staphy_phiETA: hypothetical protein phiETA_26; SAAV_0842; phage(gi17426254)  2e-29  Click
27 867749..868108  PHAGE_Staphy_42E: ORF039; SAAV_0843; phage(gi66395547)  6e-63  Click
28 868369..868620  PHAGE_Staphy_69: ORF060; SAAV_0844; phage(gi66395341)  1e-38  Click
29 868613..869146  PHAGE_Staphy_3A: ORF020; SAAV_0845; phage(gi66395608)  4e-92  Click
30 869183..869428  PHAGE_Staphy_CN125: hypothetical protein CUR029; SAAV_0846; phage(gi239507390)  2e-38  Click
31 869425..869631  PHAGE_Staphy_phiMR11: hypothetical protein; SAAV_0847; phage(gi162290141)  1e-31  Click
32 869628..870014  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp36; SAAV_0848; phage(gi156603985)  3e-68  Click
33 870319..870969  PHAGE_Staphy_CN125: hypothetical protein CUR031; SAAV_0849; phage(gi239507392)  1e-121  Click
34 870966..871169  PHAGE_Staphy_CN125: hypothetical protein CUR032; SAAV_0850; phage(gi239507393)  4e-32  Click
35 871192..871662  PHAGE_Staphy_CN125: hypothetical protein CUR033; SAAV_0851; phage(gi239507394)  1e-79  Click
36 871777..872229  PHAGE_Staphy_CN125: hypothetical protein CUR034; SAAV_0852; phage(gi239507395)  2e-82  Click
37 872236..872589  PHAGE_Staphy_CN125: hypothetical protein CUR035; SAAV_0853; phage(gi239507396)  6e-68  Click
38 872717..873187  PHAGE_Staphy_CN125: terminase small subunit; SAAV_0854; phage(gi239507397)  9e-81  Click
39 873187..874881  PHAGE_Staphy_phiPV83: phi PVL ORF 2 homologue; SAAV_0855; phage(gi9635715)  0.0  Click
40 874895..875095  PHAGE_Staphy_CN125: hypothetical protein CUR038; SAAV_0856; phage(gi239507399)  8e-28  Click
41 875161..876351  PHAGE_Staphy_CN125: portal protein; SAAV_0857; phage(gi239507400)  0.0  Click
42 876344..876928  PHAGE_Staphy_CN125: prohead protease; SAAV_0858; phage(gi239507401)  4e-109  Click
43 877016..878263  PHAGE_Staphy_CN125: putative capsid protein; SAAV_0859; phage(gi239507402)  0.0  Click
44 878299..878457  PHAGE_Staphy_phiPV83: phi PVL ORF 8 homologue; SAAV_0860; phage(gi9635720)  2e-23  Click
45 878466..878798  PHAGE_Staphy_CN125: DNA packaging protein; SAAV_0861; phage(gi239507403)  3e-59  Click
46 879120..879497  PHAGE_Staphy_CN125: hypothetical protein CUR044; SAAV_0862; phage(gi239507405)  4e-66  Click
47 879494..879874  PHAGE_Staphy_CN125: hypothetical protein CUR045; SAAV_0863; phage(gi239507406)  7e-71  Click
48 879875..880828  PHAGE_Staphy_CN125: hypothetical protein CUR046; SAAV_0864; phage(gi239507407)  1e-180  Click
49 880893..881339  PHAGE_Staphy_CN125: hypothetical protein CUR047; SAAV_0865; phage(gi239507408)  4e-80  Click
50 881399..881521  PHAGE_Staphy_CN125: hypothetical protein CUR048; SAAV_0866; phage(gi239507409)  1e-13  Click
51 881577..886226  PHAGE_Staphy_CN125: tail length tape measure protein; SAAV_0867; phage(gi239507410)  0.0  Click
52 886226..887716  PHAGE_Staphy_3: hypothetical protein SPTP3103_gp49; SAAV_0868; phage(gi156604066)  0.0  Click
53 887732..891514  PHAGE_Staphy_phiN315: hypothetical protein SA1764; SAAV_0869; phage(gi30043941)  0.0  Click
54 891507..891659  PHAGE_Staphy_phiN315: hypothetical protein SAS061; SAAV_0870; phage(gi30043940)  2e-22  Click
55 891705..891992  PHAGE_Staphy_CN125: hypothetical protein CUR057; SAAV_0871; phage(gi239507418)  2e-46  Click
56 892048..892422  PHAGE_Staphy_phi5967PVL: hypothetical protein; SAAV_0872; phage(gi431810282)  6e-65  Click
57 892952..893227  PHAGE_Staphy_phiETA: similar to phage phi PVL holin; SAAV_0873; phage(gi17426292)  1e-48  Click
58 893214..894626  PHAGE_Staphy_phiETA: similar to phage phi PVL amidase; SAAV_0874; phage(gi17426293)  0.0  Click
59 complement(894686..895243)  PHAGE_Staphy_71: ORF024; SAAV_0875; phage(gi66396064)  5e-99  Click
60 895618..895770  hypothetical protein; SAAV_0876  N/A  Click
61 895841..895951  PHAGE_Staphy_55: ORF187; SAAV_0877; phage(gi66396189)  6e-15  Click
62 895938..896138  PHAGE_Staphy_55: ORF073; SAAV_0878; phage(gi66396175)  3e-28  Click
63 896681..896700  attR    TATTGATACCATTTTGATAC  N/A  Click
Region 3, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1745082..1746050)  PHAGE_Ostreo_OsV5: hypothetical protein OsV5_197f; SAAV_1688; phage(gi163955169)  2e-12  Click
2 complement(1746451..1746771)  PHAGE_Spirop_R8A2B: putative transposase; SAAV_1689; phage(gi9626114)  5e-12  Click
3 complement(1746902..1747414)  PHAGE_Spirop_R8A2B: putative transposase; SAAV_1690; phage(gi9626114)  2e-05  Click
4 complement(1747525..1747887)  putative lipoprotein; SAAV_1691  N/A  Click
5 complement(1747934..1748527)  transposon-related protein; SAAV_1692  N/A  Click
6 complement(1748533..1749561)  PHAGE_Staphy_vB_SauM_Romulus: tail lysin; SAAV_1693; phage(gi472437801)  1e-12  Click
7 complement(1749551..1751482)  PHAGE_Microm_12T: hypothetical protein; SAAV_1694; phage(gi472342674)  2e-07  Click
8 complement(1751505..1751738)  hypothetical protein; SAAV_1695  N/A  Click
9 complement(1751757..1751924)  hypothetical protein; SAAV_1696  N/A  Click
10 complement(1751928..1753289)  PHAGE_Bacill_B4: cell division FtsK/SpoIIIE-like protein; SAAV_1697; phage(gi410493290)  1e-13  Click
Region 4, total : 64 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2044774..2046228)  PHAGE_Staphy_SMSAP5: putative amidase; SAAV_2010; phage(gi422935803)  0.0  Click
2 complement(2046239..2046541)  PHAGE_Staphy_SMSAP5: holin; SAAV_2011; phage(gi422935838)  1e-49  Click
3 complement(2047080..2047379)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2012; phage(gi448244681)  3e-52  Click
4 complement(2047425..2047589)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp63; SAAV_2013; phage(gi156604012)  3e-26  Click
5 complement(2047582..2047971)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2014; phage(gi448244680)  5e-61  Click
6 complement(2047971..2049437)  PHAGE_Staphy_42E: ORF005; SAAV_2015; phage(gi66395513)  0.0  Click
7 2048691..2048703  attL    TTTTTGCCAATTT  N/A  Click
8 complement(2049437..2051347)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2016; phage(gi448244678)  0.0  Click
9 complement(2051363..2051653)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2017; phage(gi448244677)  7e-51  Click
10 complement(2051653..2053236)  PHAGE_Staphy_SMSAP5: prophage endopeptidase tail family protein; SAAV_2018; phage(gi422935801)  0.0  Click
11 complement(2053245..2054069)  PHAGE_Staphy_2: phage tail tape measure protein like; SAAV_2019; phage(gi156604006)  1e-160  Click
12 complement(2054069..2060245)  PHAGE_Staphy_phi7401PVL: phage tail tape measure protein; SAAV_2020; phage(gi448244674)  0.0  Click
13 complement(2060259..2060417)  PHAGE_Staphy_IPLA35: hypothetical protein SauSIPLA35_gp49; SAAV_2021; phage(gi215401157)  4e-21  Click
14 complement(2060459..2060809)  PHAGE_Staphy_12: SLT orf 116b-like protein; SAAV_2022; phage(gi29028656)  1e-60  Click
15 complement(2060867..2061322)  PHAGE_Staphy_phi7401PVL: major tail protein2; SAAV_2023; phage(gi448244672)  6e-79  Click
16 complement(2061414..2062055)  PHAGE_Staphy_phi7401PVL: major tail protein1; SAAV_2024; phage(gi448244671)  2e-119  Click
17 complement(2062090..2062485)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2025; phage(gi448244670)  5e-69  Click
18 complement(2062486..2062887)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2026; phage(gi448244669)  6e-69  Click
19 complement(2062884..2063216)  PHAGE_Staphy_SMSAP5: hypothetical protein; SAAV_2027; phage(gi422935831)  3e-58  Click
20 complement(2063228..2063506)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp49; SAAV_2028; phage(gi156603998)  2e-48  Click
21 complement(2063575..2064738)  PHAGE_Staphy_phi7401PVL: phage major capsid protein; SAAV_2029; phage(gi448244667)  0.0  Click
22 complement(2064750..2065523)  PHAGE_Staphy_SMSAP5: protease; SAAV_2030; phage(gi422935811)  7e-143  Click
23 complement(2065507..2066745)  PHAGE_Staphy_phi7401PVL: portal protein; SAAV_2031; phage(gi448244665)  0.0  Click
24 complement(2066750..2068441)  PHAGE_Staphy_phi7401PVL: terminase large subunit; SAAV_2032; phage(gi448244664)  0.0  Click
25 complement(2068431..2068736)  PHAGE_Staphy_phi7401PVL: terminase-small subunit; SAAV_2033; phage(gi448244663)  6e-52  Click
26 complement(2068863..2069177)  PHAGE_Staphy_42E: ORF046; SAAV_2034; phage(gi66395552)  3e-59  Click
27 complement(2069332..2069748)  PHAGE_Staphy_phi5967PVL: hypothetical protein; SAAV_2035; phage(gi431810266)  9e-78  Click
28 complement(2069776..2069976)  PHAGE_Staphy_77: 77ORF071; SAAV_2036; phage(gi41189570)  3e-28  Click
29 complement(2069976..2070218)  PHAGE_Staphy_phiMR11: hypothetical protein; SAAV_2037; phage(gi162290142)  1e-05  Click
30 complement(2070215..2070421)  PHAGE_Staphy_42E: ORF081; SAAV_2038; phage(gi66395571)  4e-32  Click
31 complement(2070458..2070994)  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp25; SAAV_2039; phage(gi209363577)  1e-97  Click
32 complement(2070987..2071229)  PHAGE_Staphy_11: ETA orf 33-like protein; SAAV_2040; phage(gi29028587)  4e-38  Click
33 complement(2071219..2071470)  PHAGE_Staphy_phiETA3: hypothetical protein phiETA3_gp32; SAAV_2041; phage(gi122891816)  6e-41  Click
34 complement(2071485..2071598)  PHAGE_Staphy_phiSLT: phi PVL ORF 51 analogue; SAAV_2042; phage(gi12719418)  1e-14  Click
35 complement(2071734..2072093)  PHAGE_Staphy_42E: ORF039; SAAV_2043; phage(gi66395547)  2e-63  Click
36 complement(2072094..2072279)  PHAGE_Staphy_IPLA88: hypothetical protein SauSIPLA88_gp23; SAAV_2044; phage(gi215401193)  2e-27  Click
37 complement(2072748..2073077)  hypothetical protein; SAAV_2045  N/A  Click
38 complement(2073140..2073340)  hypothetical protein; SAAV_2046  N/A  Click
39 complement(2073337..2075193)  PHAGE_Lister_P40: gp32; SAAV_2047; phage(gi207270806)  6e-125  Click
40 complement(2075215..2076948)  PHAGE_Lister_P35: gp33; SAAV_2048; phage(gi157325398)  3e-112  Click
41 complement(2076968..2077603)  PHAGE_Lister_P40: gp30; SAAV_2049; phage(gi207270804)  3e-29  Click
42 complement(2077626..2078384)  PHAGE_Lister_P35: gp31; SAAV_2050; phage(gi157325396)  9e-31  Click
43 complement(2078395..2078718)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2051; phage(gi448244651)  9e-27  Click
44 complement(2078731..2079342)  PHAGE_Lister_P40: gp28; SAAV_2052; phage(gi207270802)  1e-49  Click
45 complement(2079365..2079601)  PHAGE_Staphy_StB27: hypothetical protein; SAAV_2053; phage(gi431809688)  5e-17  Click
46 complement(2079609..2079869)  PHAGE_Staphy_187: ORF060; SAAV_2054; phage(gi66395264)  2e-18  Click
47 complement(2079968..2080129)  PHAGE_Staphy_3: hypothetical protein SPTP3103_gp11; SAAV_2055; phage(gi156604028)  2e-24  Click
48 complement(2080126..2080446)  PHAGE_Staphy_1: hypothetical protein SPTP3101_gp10; SAAV_2056; phage(gi156603899)  1e-58  Click
49 complement(2080597..2080740)  PHAGE_Staphy_71: ORF132; SAAV_2057; phage(gi66396109)  1e-19  Click
50 2081282..2081494  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp09; SAAV_2058; phage(gi156603958)  4e-34  Click
51 complement(2081535..2081684)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp08; SAAV_2059; phage(gi156603957)  3e-23  Click
52 complement(2081699..2082142)  PHAGE_Staphy_2: hypothetical protein SPTP3102_gp07; SAAV_2060; phage(gi156603956)  2e-77  Click
53 complement(2082155..2082403)  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2061; phage(gi448244649)  1e-38  Click
54 2082567..2082890  PHAGE_Staphy_phi7401PVL: phage repressor; SAAV_2062; phage(gi448244648)  3e-55  Click
55 2082903..2083364  PHAGE_Staphy_phi7401PVL: hypothetical protein; SAAV_2063; phage(gi448244647)  2e-85  Click
56 2083381..2083827  PHAGE_Staphy_phi7401PVL: putative lipoprotein; SAAV_2064; phage(gi448244646)  3e-37  Click
57 2083896..2084780  PHAGE_Staphy_phiNM: hypothetical protein SAPPV1_gp03; SAAV_2065; phage(gi118430727)  6e-32  Click
58 2085101..2085454  PHAGE_Staphy_42E: ORF026; SAAV_2066; phage(gi66395534)  1e-59  Click
59 2085553..2085720  hypothetical protein; SAAV_2067  N/A  Click
60 2086060..2086425  PHAGE_Staphy_phiMR25: hypothetical protein; SAAV_2068; phage(gi189427124)  6e-25  Click
61 2086438..2086764  PHAGE_Staphy_phiMR25: hypothetical protein; SAAV_2069; phage(gi189427124)  9e-13  Click
62 2086899..2086911  attR    TTTTTGCCAATTT  N/A  Click
63 2086926..2087963  PHAGE_Staphy_phiN315: integrase; SAAV_2070; phage(gi30043990)  0.0  Click
64 2088020..2088844  truncated beta hemolysin; SAAV_2071  N/A  Click
65 complement(2089082..2090098)  PHAGE_Staphy_phi7401PVL: Panton-Valentine leukocidin chain F precursor; SAAV_2072; phage(gi448244685)  2e-56  Click
66 complement(2090120..2091175)  PHAGE_Staphy_phi7401PVL: Panton-Valentine leukocidin chain S precursor; SAAV_2073; phage(gi448244684)  4e-41  Click