| Definition | Comamonas testosteroni CNB-2, complete genome. |
|---|---|
| Accession | NC_013446 |
| Length | 5,373,643 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 64 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1625391..1625403 | attL CAATCATTTCAAC | N/A | Click |
| 2 | complement(1628092..1629276) | PHAGE_Cronob_phiES15: putative integrase; CtCNB1_1435; phage(gi401817566) | 1e-72 | Click |
| 3 | complement(1629234..1629488) | hypothetical protein; CtCNB1_1436 | N/A | Click |
| 4 | complement(1629834..1630094) | hypothetical protein; CtCNB1_1437 | N/A | Click |
| 5 | complement(1630091..1630837) | PHAGE_Salmon_SPN3UB: hypothetical protein; CtCNB1_1438; phage(gi423262431) | 9e-69 | Click |
| 6 | complement(1630996..1631433) | hypothetical protein; CtCNB1_1439 | N/A | Click |
| 7 | 1631519..1631809 | hypothetical protein; CtCNB1_1440 | N/A | Click |
| 8 | complement(1631857..1632114) | hypothetical protein; CtCNB1_1441 | N/A | Click |
| 9 | complement(1632238..1633458) | PHAGE_Pseudo_MP1412: diguanylate-cyclase GGDEF domain; CtCNB1_1442; phage(gi399529005) | 5e-05 | Click |
| 10 | 1633486..1633498 | attR CAATCATTTCAAC | N/A | Click |
| 11 | complement(1633729..1634127) | hypothetical protein; CtCNB1_1443 | N/A | Click |
| 12 | 1634302..1634313 | attL AGCACGGGCTGT | N/A | Click |
| 13 | 1634377..1634388 | attL GCTATTTGTGGC | N/A | Click |
| 14 | complement(1634475..1635434) | PHAGE_Pseudo_F116: RdgC exonuclease; CtCNB1_1444; phage(gi56692914) | 9e-38 | Click |
| 15 | complement(1635541..1635948) | sensors of blue-light using FAD; CtCNB1_1445 | N/A | Click |
| 16 | complement(1636015..1636212) | hypothetical protein; CtCNB1_1446 | N/A | Click |
| 17 | complement(1637255..1637569) | hypothetical protein; CtCNB1_1447 | N/A | Click |
| 18 | complement(1638742..1639290) | PHAGE_Escher_TL_2011c: repressor protein CI; CtCNB1_1448; phage(gi418487062) | 2e-10 | Click |
| 19 | 1639376..1639630 | PHAGE_Salmon_vB_SosS_Oslo: Cro repressor protein; CtCNB1_1449; phage(gi399528814) | 6e-09 | Click |
| 20 | 1639623..1640066 | hypothetical protein; CtCNB1_1450 | N/A | Click |
| 21 | 1640063..1640332 | PHAGE_Salmon_vB_SenS_Ent1: putative DNA-binding protein; CtCNB1_1451; phage(gi423261866) | 3e-08 | Click |
| 22 | complement(1640417..1641196) | PHAGE_Pseudo_F116: hypothetical protein F116p33; CtCNB1_1452; phage(gi56692949) | 2e-32 | Click |
| 23 | complement(1641186..1641413) | PHAGE_Pseudo_F116: hypothetical protein F116p32; CtCNB1_1453; phage(gi56692948) | 7e-05 | Click |
| 24 | complement(1641443..1641904) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_1454; phage(gi401723060) | 1e-15 | Click |
| 25 | complement(1642272..1643255) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_1455; phage(gi401723056) | 5e-18 | Click |
| 26 | complement(1643266..1644897) | PHAGE_Burkho_DC1: portal protein; CtCNB1_1456; phage(gi401723055) | 3e-93 | Click |
| 27 | 1644937..1645572 | hypothetical protein; CtCNB1_1457 | N/A | Click |
| 28 | 1645576..1646307 | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_1458; phage(gi401723063) | 3e-34 | Click |
| 29 | 1646307..1646867 | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_1459; phage(gi401723064) | 6e-06 | Click |
| 30 | 1646877..1648556 | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_1460; phage(gi401723073) | 9e-69 | Click |
| 31 | 1648556..1655131 | PHAGE_Cyanop_NATL2A_133: hypothetical protein; CtCNB1_1461; phage(gi372217849) | 8e-47 | Click |
| 32 | 1655109..1656224 | PHAGE_Xantho_CP1: hypothetical protein; CtCNB1_1462; phage(gi431811021) | 5e-09 | Click |
| 33 | 1656377..1657072 | hypothetical protein; CtCNB1_1463 | N/A | Click |
| 34 | 1657421..1658038 | GCN5-related N-acetyltransferase; CtCNB1_1464 | N/A | Click |
| 35 | 1658042..1658863 | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_1465; phage(gi401723076) | 1e-30 | Click |
| 36 | 1659317..1660882 | Integrase, catalytic region; CtCNB1_1466 | N/A | Click |
| 37 | complement(1660929..1661183) | hypothetical protein; CtCNB1_1467 | N/A | Click |
| 38 | 1661560..1662309 | phage transcriptional regulator, AlpA; CtCNB1_1468 | N/A | Click |
| 39 | complement(1662442..1663029) | two component transcriptional regulator, LuxR; CtCNB1_1469 | N/A | Click |
| 40 | 1663893..1664417 | PHAGE_Human__2: EBNA-1; CtCNB1_1470; phage(gi139424506) | 4e-18 | Click |
| 41 | 1664490..1665230 | PHAGE_Ralsto_RSL1: unnamed protein product; CtCNB1_1471; phage(gi189426847) | 2e-08 | Click |
| 42 | 1665261..1665593 | hypothetical protein; CtCNB1_1472 | N/A | Click |
| 43 | 1665868..1665879 | attR GCTATTTGTGGC | N/A | Click |
| 44 | 1666326..1667576 | PHAGE_Stenot_S1: putative integrase; CtCNB1_1473; phage(gi213163927) | 5e-92 | Click |
| 45 | complement(1668208..1669182) | hypothetical protein; CtCNB1_1474 | N/A | Click |
| 46 | complement(1670059..1670709) | oxidoreductase; CtCNB1_1476 | N/A | Click |
| 47 | 1670665..1670967 | hypothetical protein; CtCNB1_1475 | N/A | Click |
| 48 | 1670994..1671005 | attL TTGTTGCGCCTA | N/A | Click |
| 49 | complement(1671015..1672139) | gram-negative type outer membrane porin protein; CtCNB1_1477 | N/A | Click |
| 50 | complement(1672263..1672499) | hypothetical protein; CtCNB1_1478 | N/A | Click |
| 51 | complement(1672590..1673564) | TctC; CtCNB1_1479 | N/A | Click |
| 52 | complement(1673907..1674587) | PROPHAGE_Shewan_MR-1: ISSod6, transposase; CtCNB1_1480; phage(gi24374783) | 6e-42 | Click |
| 53 | complement(1674704..1675168) | PHAGE_Spirop_C74: putative transposase; CtCNB1_1481; phage(gi20514680) | 4e-05 | Click |
| 54 | 1675463..1675475 | attL CGGCCCTGTTGGT | N/A | Click |
| 55 | complement(1675769..1676263) | hemerythrin-like metal-binding protein; CtCNB1_1482 | N/A | Click |
| 56 | complement(1676329..1677291) | ferredoxin; CtCNB1_1483 | N/A | Click |
| 57 | 1677569..1678912 | major facilitator superfamily MFS_1; CtCNB1_1484 | N/A | Click |
| 58 | 1678956..1679948 | 4,5-dihydroxyphthalate decarboxylase; CtCNB1_1485 | N/A | Click |
| 59 | 1680239..1680832 | MarR family transcriptional regulator; CtCNB1_1486 | N/A | Click |
| 60 | complement(1680894..1682081) | oxidoreductase-like protein; CtCNB1_1487 | N/A | Click |
| 61 | complement(1682089..1683420) | Rieske iron-sulfur protein; CtCNB1_1488 | N/A | Click |
| 62 | complement(1684363..1685901) | PROPHAGE_Escher_MG1655: IS150 transposase B; CtCNB1_1489; phage(gi16131429) | 2e-55 | Click |
| 63 | complement(1686200..1687276) | PROPHAGE_Shewan_MR-1: IS110 family transposase; CtCNB1_1490; phage(gi24375433) | 5e-43 | Click |
| 64 | complement(1687693..1688460) | transcriptional regulator, IclR family; CtCNB1_1491 | N/A | Click |
| 65 | 1688570..1689538 | TctC; CtCNB1_1492 | N/A | Click |
| 66 | 1689554..1690795 | terephthalate 1,2-dioxygenase oxygenase large subunit; CtCNB1_1493 | N/A | Click |
| 67 | 1690792..1691256 | oxygenase small subunit of terephthalate 1,2-dioxygenase; CtCNB1_1494 | N/A | Click |
| 68 | 1691280..1692200 | terephthalate dihydrodiol dehydrogenase; CtCNB1_1495 | N/A | Click |
| 69 | 1692210..1693220 | PHAGE_Cyanop_KBS_M_1A: ferredoxin; CtCNB1_1496; phage(gi472339260) | 1e-08 | Click |
| 70 | complement(1693241..1693819) | PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; CtCNB1_1497; phage(gi17546155) | 1e-07 | Click |
| 71 | complement(1693886..1694005) | Integrase, catalytic region; CtCNB1_1498 | N/A | Click |
| 72 | 1694028..1694040 | attR CGGCCCTGTTGGT | N/A | Click |
| 73 | 1694897..1694908 | attR TTGTTGCGCCTA | N/A | Click |
| 74 | 1700728..1700739 | attR AGCACGGGCTGT | N/A | Click |
Region 2, total : 22 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(3003926..3004213) | PHAGE_Halomo_1: hypothetical protein HAPgp19; CtCNB1_2636; phage(gi167832364) | 4e-06 | Click |
| 2 | complement(3004216..3004620) | hypothetical protein; CtCNB1_2637 | N/A | Click |
| 3 | complement(3004796..3006100) | PHAGE_Azospi_Cd: hypothetical protein APCd_gp49; CtCNB1_2638; phage(gi168495152) | 1e-29 | Click |
| 4 | complement(3006107..3006850) | PHAGE_Salmon_SSU5: putative phage tail fiber protein; CtCNB1_2639; phage(gi410491431) | 2e-07 | Click |
| 5 | complement(3006895..3010038) | PHAGE_Salmon_SSU5: putative phage tail protein; CtCNB1_2640; phage(gi410491430) | 3e-16 | Click |
| 6 | complement(3010038..3011717) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_2641; phage(gi401723073) | 2e-66 | Click |
| 7 | complement(3011727..3012290) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_2642; phage(gi401723064) | 4e-06 | Click |
| 8 | complement(3012287..3013003) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_2643; phage(gi401723063) | 2e-34 | Click |
| 9 | complement(3013007..3013624) | hypothetical protein; CtCNB1_2644 | N/A | Click |
| 10 | complement(3013710..3014159) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_2645; phage(gi401723061) | 1e-05 | Click |
| 11 | complement(3014230..3015354) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_2646; phage(gi401723060) | 3e-95 | Click |
| 12 | complement(3015722..3016711) | PHAGE_Burkho_DC1: hypothetical protein; CtCNB1_2647; phage(gi401723056) | 1e-17 | Click |
| 13 | complement(3016722..3018965) | PHAGE_Burkho_DC1: portal protein; CtCNB1_2648; phage(gi401723055) | 2e-138 | Click |
| 14 | complement(3018965..3020269) | PHAGE_Cronob_vB_CsaP_GAP52: terminase large subunit; CtCNB1_2649; phage(gi414087466) | 3e-42 | Click |
| 15 | complement(3020329..3020898) | PHAGE_Pseudo_UFV_P2: terminase large subunit; CtCNB1_2650; phage(gi410491823) | 4e-25 | Click |
| 16 | complement(3020888..3021316) | PHAGE_Entero_Sf6: gene 1 protein; CtCNB1_2651; phage(gi41057279) | 5e-08 | Click |
| 17 | complement(3021681..3022142) | PHAGE_Bacill_SP10: hypothetical protein; CtCNB1_2652; phage(gi418489486) | 5e-12 | Click |
| 18 | complement(3022139..3022633) | hypothetical protein; CtCNB1_2653 | N/A | Click |
| 19 | complement(3022630..3023235) | PHAGE_Entero_vB_EcoS_ACG_M12: putative endolysin; CtCNB1_2654; phage(gi414087701) | 9e-14 | Click |
| 20 | complement(3023238..3023540) | PHAGE_Pseudo_F116: holin; CtCNB1_2655; phage(gi56692925) | 6e-07 | Click |
| 21 | complement(3023691..3034475) | PHAGE_Pseudo_F116: hypothetical protein F116p60; CtCNB1_2656; phage(gi56692971) | 0.0 | Click |
| 22 | complement(3034486..3036063) | PHAGE_Helico_2: hypothetical protein; CtCNB1_2657; phage(gi370703038) | 4e-06 | Click |
Region 3, total : 26 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4011941..4012828 | PHAGE_Sphing_PAU: gp187; CtCNB1_3544; phage(gi435844690) | 6e-11 | Click |
| 2 | complement(4012916..4013143) | SirA-like protein; CtCNB1_3545 | N/A | Click |
| 3 | complement(4013212..4013835) | NUDIX hydrolase; CtCNB1_3546 | N/A | Click |
| 4 | complement(4014033..4014938) | PHAGE_Lactoc_P087: putative cysteine synthase; CtCNB1_3547; phage(gi229605000) | 3e-55 | Click |
| 5 | 4014979..4015063 | tRNA | N/A | Click |
| 6 | 4015446..4015688 | PHAGE_Cronob_ENT39118: protein umuD; CtCNB1_3548; phage(gi431811072) | 4e-09 | Click |
| 7 | 4015695..4016993 | PHAGE_Cronob_ENT39118: DNA polymerase; CtCNB1_3549; phage(gi431811050) | 9e-84 | Click |
| 8 | complement(4017006..4018007) | hypothetical protein; CtCNB1_3550 | N/A | Click |
| 9 | complement(4018165..4018659) | hypothetical protein; CtCNB1_3551 | N/A | Click |
| 10 | complement(4018656..4019126) | PHAGE_Bacter_2: lysozyme; CtCNB1_3552; phage(gi212499717) | 3e-31 | Click |
| 11 | complement(4019123..4019419) | hypothetical protein; CtCNB1_3553 | N/A | Click |
| 12 | complement(4019480..4020226) | PHAGE_Synech_S_SKS1: hypothetical protein; CtCNB1_3554; phage(gi472340853) | 8e-32 | Click |
| 13 | complement(4020223..4020972) | PHAGE_Synech_S_CRM01: collagen triple helix repeat domain protein; CtCNB1_3555; phage(gi333798184) | 1e-25 | Click |
| 14 | complement(4020969..4023686) | PHAGE_phiJL001: gp86; CtCNB1_3556; phage(gi62327193) | 5e-37 | Click |
| 15 | complement(4023689..4024111) | PHAGE_Caulob_CcrKarma: putative NlpC/P60 family cell wall peptidase; CtCNB1_3557; phage(gi414089327) | 7e-12 | Click |
| 16 | complement(4024108..4024992) | PHAGE_Roseob_1: gene transfer agent; CtCNB1_3558; phage(gi331028136) | 7e-36 | Click |
| 17 | complement(4024989..4025594) | PHAGE_Caulob_CcrRogue: hypothetical protein; CtCNB1_3559; phage(gi414088956) | 7e-15 | Click |
| 18 | complement(4025598..4028315) | PHAGE_Pseudo_MP29: putative tail component protein; CtCNB1_3560; phage(gi215480016) | 1e-96 | Click |
| 19 | complement(4028325..4028642) | phage protein; CtCNB1_3561 | N/A | Click |
| 20 | complement(4028717..4029067) | hypothetical protein; CtCNB1_3562 | N/A | Click |
| 21 | complement(4029171..4029833) | PHAGE_Entero_2009a: putative major tail protein; CtCNB1_3563; phage(gi225220101) | 2e-06 | Click |
| 22 | complement(4029849..4030283) | hypothetical protein; CtCNB1_3564 | N/A | Click |
| 23 | complement(4030280..4030582) | hypothetical protein; CtCNB1_3565 | N/A | Click |
| 24 | complement(4030598..4030921) | PHAGE_Entero_mEp460: hypothetical protein; RecA/RadA; phage recombinase; CtCNB1_3566(gi428782322) | 7e-10 | Click |
| 25 | complement(4030978..4033071) | PHAGE_Entero_mEp213: head maturation protease; CtCNB1_3567; phage(gi428782594) | 1e-128 | Click |
| 26 | 4034010..4034444 | hypothetical protein; CtCNB1_3568 | N/A | Click |
| 27 | complement(4034548..4036077) | PHAGE_Pseudo_F10: Putative portal protein; CtCNB1_3569; phage(gi148912769) | 9e-107 | Click |
Region 4, total : 19 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4035380..4035392 | attL GCCATGTGCAGCA | N/A | Click |
| 2 | complement(4041791..4042363) | PHAGE_Burkho_2: gp53; CtCNB1_3578; phage(gi134288635) | 9e-08 | Click |
| 3 | 4042362..4042598 | hypothetical protein; CtCNB1_3577 | N/A | Click |
| 4 | complement(4043770..4043919) | hypothetical protein; CtCNB1_3581 | N/A | Click |
| 5 | 4044074..4044736 | PHAGE_Pseudo_F10: Repressor protein; CtCNB1_3582; phage(gi148912804) | 1e-14 | Click |
| 6 | 4045211..4045657 | PHAGE_Mycoba_U2: gp66; CtCNB1_3583; phage(gi157786460) | 8e-07 | Click |
| 7 | 4046089..4046787 | hypothetical protein; CtCNB1_3584 | N/A | Click |
| 8 | 4046815..4047156 | hypothetical protein; CtCNB1_3585 | N/A | Click |
| 9 | 4047192..4047428 | hypothetical protein; CtCNB1_3586 | N/A | Click |
| 10 | complement(4047425..4047538) | bacteriophage tail assembly protein-like protein; CtCNB1_3587 | N/A | Click |
| 11 | 4047562..4047792 | hypothetical protein; CtCNB1_3588 | N/A | Click |
| 12 | 4047746..4048003 | PHAGE_Stenot_S1: hypothetical protein StPS1_gp38; CtCNB1_3589; phage(gi213163937) | 1e-06 | Click |
| 13 | 4047996..4048193 | hypothetical protein; CtCNB1_3590 | N/A | Click |
| 14 | 4048204..4048437 | hypothetical protein; CtCNB1_3591 | N/A | Click |
| 15 | 4048501..4049547 | PHAGE_Pseudo_KPP10: hypothetical protein; CtCNB1_3592; phage(gi327198142) | 1e-13 | Click |
| 16 | 4049551..4050150 | hypothetical protein; CtCNB1_3593 | N/A | Click |
| 17 | 4050407..4050904 | hypothetical protein; CtCNB1_3594 | N/A | Click |
| 18 | 4051768..4052031 | hypothetical protein; CtCNB1_3595 | N/A | Click |
| 19 | 4052095..4052301 | phage protein; CtCNB1_3596 | N/A | Click |
| 20 | 4052228..4052240 | attR GCCATGTGCAGCA | N/A | Click |
| 21 | 4052312..4053346 | PHAGE_Pseudo_F10: Integrase; CtCNB1_3597; phage(gi148912793) | 1e-39 | Click |