Definition | Clostridium difficile R20291 chromosome, complete genome. |
---|---|
Accession | NC_013316 |
Length | 4,191,339 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 21 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(271099..271392) | putative spore coat protein; CDR20291_0212 | N/A | Click |
2 | complement(271398..271613) | hypothetical protein; CDR20291_0213 | N/A | Click |
3 | complement(272158..272670) | putative nitroreductase; CDR20291_0214 | N/A | Click |
4 | 273120..273596 | phosphoribosylaminoimidazole carboxylase catalytic subunit; CDR20291_0215 | N/A | Click |
5 | 273602..274300 | PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; CDR20291_0216; phage(gi326784002) | 2e-48 | Click |
6 | 274312..275679 | PHAGE_Parame_FR483: hypothetical protein FR483_N035R; CDR20291_0217; phage(gi155370133) | 6e-22 | Click |
7 | 275673..276749 | PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; CDR20291_0218; phage(gi472340860) | 3e-64 | Click |
8 | 276743..277336 | PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; CDR20291_0219; phage(gi134288807) | 1e-06 | Click |
9 | 277329..278861 | PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; CDR20291_0220; phage(gi61806062) | 5e-61 | Click |
10 | 278872..280122 | phosphoribosylamine--glycine ligase; CDR20291_0221 | N/A | Click |
11 | 280147..283953 | PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; CDR20291_0222; phage(gi149882852) | 4e-36 | Click |
12 | 284159..285031 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; CDR20291_0223; phage(gi448260370) | 1e-34 | Click |
13 | 285140..286021 | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; CDR20291_0224; phage(gi448260372) | 2e-97 | Click |
14 | 286058..286615 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; CDR20291_0225; phage(gi448260371) | 3e-46 | Click |
15 | 286653..287636 | PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; CDR20291_0226; phage(gi448260373) | 2e-73 | Click |
16 | 287612..288343 | PHAGE_Pseudo_KPP12: putative lytic tail protein; CDR20291_0227; phage(gi431811119) | 6e-17 | Click |
17 | 288352..288780 | hypothetical protein; CDR20291_0228 | N/A | Click |
18 | 288804..289118 | flagellar motor switch protein; CDR20291_0229 | N/A | Click |
19 | 289270..289545 | PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; CDR20291_0230; phage(gi310831032) | 9e-05 | Click |
20 | 289550..289966 | putative flagellar biosynthesis protein; CDR20291_0231 | N/A | Click |
21 | 289984..291294 | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CDR20291_0232; phage(gi9631364) | 4e-08 | Click |
Region 2, total : 30 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1428004..1428204 | PHAGE_Lactoc_bIL312: Csp; CDR20291_1197; phage(gi13095918) | 6e-17 | Click |
2 | 1428625..1429053 | putative regulatory protein; CDR20291_1198 | N/A | Click |
3 | complement(1429196..1429981) | putative peptidyl-prolyl isomerase; CDR20291_1199 | N/A | Click |
4 | complement(1430072..1430488) | hypothetical protein; CDR20291_1200 | N/A | Click |
5 | complement(1430652..1431158) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CDR20291_1201; phage(gi209901280) | 3e-10 | Click |
6 | complement(1431240..1431560) | PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; CDR20291_1202; phage(gi399498895) | 9e-13 | Click |
7 | 1431729..1431926 | PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; CDR20291_1203; phage(gi17426238) | 6e-06 | Click |
8 | 1432031..1432471 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; CDR20291_1204; phage(gi90592709) | 8e-38 | Click |
9 | 1432720..1433163 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; CDR20291_1205; phage(gi90592649) | 2e-24 | Click |
10 | 1433168..1434232 | PHAGE_Clostr_phiMMP04: tail sheath; CDR20291_1206; phage(gi414090451) | 2e-69 | Click |
11 | 1434246..1434674 | PHAGE_Clostr_phiMMP04: XkdM-related protein; CDR20291_1207; phage(gi414090452) | 8e-08 | Click |
12 | 1434788..1435234 | PHAGE_Clostr_CD119: XkdN protein; CDR20291_1208; phage(gi90592652) | 4e-15 | Click |
13 | 1435261..1435428 | hypothetical protein; CDR20291_1209 | N/A | Click |
14 | 1435401..1437881 | PHAGE_Clostr_phiMMP04: tail tape measure; CDR20291_1210; phage(gi414090455) | 2e-22 | Click |
15 | 1437881..1438303 | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; CDR20291_1211; phage(gi414090456) | 2e-47 | Click |
16 | 1438585..1440114 | PHAGE_Clostr_phiMMP04: cell wall hydrolase; CDR20291_1212; phage(gi414090458) | 2e-121 | Click |
17 | 1440130..1440456 | PHAGE_Clostr_phiMMP04: hypothetical protein; CDR20291_1213; phage(gi414090459) | 3e-55 | Click |
18 | 1440456..1440884 | PHAGE_Clostr_phiMMP04: XkdS-related protein; CDR20291_1214; phage(gi414090460) | 1e-63 | Click |
19 | 1440877..1441929 | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; CDR20291_1215; phage(gi414090461) | 1e-140 | Click |
20 | 1441926..1442624 | PHAGE_Clostr_phiMMP04: hypothetical protein; CDR20291_1216; phage(gi414090462) | 2e-52 | Click |
21 | 1442625..1443611 | PHAGE_Clostr_phiMMP04: tail fiber; CDR20291_1217; phage(gi414090463) | 1e-49 | Click |
22 | 1443633..1448810 | PHAGE_Bathyc_BpV1: hypothetical protein; CDR20291_1218; phage(gi313768166) | 3e-20 | Click |
23 | 1449061..1449180 | putative phage-related protein; CDR20291_1219 | N/A | Click |
24 | 1449443..1449703 | PHAGE_Clostr_phiCD38_2: putative holin; CDR20291_1220; phage(gi333798129) | 4e-37 | Click |
25 | complement(1449928..1450383) | hypothetical protein; CDR20291_1221 | N/A | Click |
26 | complement(1450611..1451030) | PHAGE_Strept_3: putative cI-like repressor; CDR20291_1222; phage(gi28876313) | 6e-08 | Click |
27 | 1451329..1451538 | PHAGE_Bacill_BCJA1c: cro; CDR20291_1223; phage(gi56694875) | 4e-08 | Click |
28 | 1451558..1451779 | hypothetical protein; CDR20291_1224 | N/A | Click |
29 | complement(1451996..1452403) | PHAGE_Lister_A118: putative repressor protein; CDR20291_1225; phage(gi16798819) | 1e-08 | Click |
30 | complement(1452815..1455319) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CDR20291_1226; phage(gi9631364) | 2e-12 | Click |
Region 3, total : 50 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1670843..1670862 | attL TATTACAACTTAAGTAAATA | N/A | Click |
2 | complement(1671047..1672177) | PHAGE_Clostr_phiC2: putative integrase; CDR20291_1415; phage(gi134287379) | 3e-137 | Click |
3 | complement(1672256..1672963) | hypothetical protein; CDR20291_1416 | N/A | Click |
4 | complement(1672976..1673845) | HipA-like protein; CDR20291_1417 | N/A | Click |
5 | complement(1674465..1674971) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CDR20291_1418; phage(gi209901280) | 4e-09 | Click |
6 | 1676376..1677185 | PHAGE_Staphy_88: ORF019; CDR20291_1419; phage(gi66396351) | 2e-57 | Click |
7 | 1678722..1679159 | PHAGE_Entero_phiFL4A: hypothetical protein; CDR20291_1420; phage(gi281416448) | 1e-08 | Click |
8 | 1679171..1680337 | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; CDR20291_1421; phage(gi209363569) | 3e-100 | Click |
9 | 1680740..1681312 | hypothetical protein; CDR20291_1422 | N/A | Click |
10 | 1681335..1681907 | PHAGE_Bacill_PBC1: hypothetical protein; CDR20291_1423; phage(gi389060352) | 2e-52 | Click |
11 | 1681907..1683865 | PHAGE_Bacill_PBC1: DNA polymerase; CDR20291_1424; phage(gi389060355) | 0.0 | Click |
12 | 1683877..1686294 | PHAGE_Entero_phiFL4A: VirE domain protein; CDR20291_1425; phage(gi281416460) | 0.0 | Click |
13 | 1686851..1688221 | PHAGE_Entero_phiFL4A: DNA helicase; CDR20291_1426; phage(gi281416462) | 4e-154 | Click |
14 | 1688375..1688854 | PHAGE_Clostr_PhiS63: gp40; CDR20291_1427; phage(gi388570666) | 1e-40 | Click |
15 | 1689137..1689589 | PHAGE_Clostr_phiMMP02: phage repressor; CDR20291_1428; phage(gi414090441) | 2e-71 | Click |
16 | 1689881..1690855 | hypothetical protein; CDR20291_1429 | N/A | Click |
17 | 1690876..1691385 | hypothetical protein; CDR20291_1430 | N/A | Click |
18 | 1691455..1692147 | PHAGE_Clostr_phiC2: putative terminase small subunit; CDR20291_1431; phage(gi134287336) | 4e-127 | Click |
19 | 1692125..1693378 | PHAGE_Clostr_phiC2: putative terminase large subunit; CDR20291_1432; phage(gi134287337) | 0.0 | Click |
20 | 1693384..1694826 | PHAGE_Clostr_phiC2: putative portal protein; CDR20291_1433; phage(gi134287338) | 0.0 | Click |
21 | 1694816..1696351 | PHAGE_Clostr_phiC2: putative head morphogenesis protein; CDR20291_1434; phage(gi134287339) | 0.0 | Click |
22 | 1696669..1697232 | PHAGE_Clostr_phiC2: putative scaffold protein; CDR20291_1435; phage(gi134287341) | 4e-104 | Click |
23 | 1697244..1698134 | PHAGE_Clostr_phiC2: putative main capsid protein; CDR20291_1436; phage(gi134287342) | 5e-168 | Click |
24 | 1698387..1698797 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; CDR20291_1437; phage(gi134287344) | 2e-69 | Click |
25 | 1698791..1699138 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; CDR20291_1438; phage(gi134287345) | 3e-59 | Click |
26 | 1699517..1700344 | PHAGE_Clostr_O: hypothetical protein 39-O_gp07; CDR20291_1439; phage(gi208429862) | 5e-52 | Click |
27 | 1700693..1701130 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; CDR20291_1440; phage(gi134287347) | 8e-78 | Click |
28 | 1701300..1702610 | PHAGE_Clostr_phiC2: putative sheath tail protein; CDR20291_1441; phage(gi134287348) | 0.0 | Click |
29 | 1702627..1703097 | PHAGE_Clostr_phiC2: putative core tail; CDR20291_1442; phage(gi134287349) | 5e-73 | Click |
30 | 1703156..1703983 | PHAGE_Clostr_phiCP26F: hypothetical protein; CDR20291_1443; phage(gi422933952) | 5e-42 | Click |
31 | 1704055..1704495 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; CDR20291_1444; phage(gi134287351) | 2e-49 | Click |
32 | 1704836..1704997 | PHAGE_Clostr_phiCD38_2: hypothetical protein; CDR20291_1445; phage(gi333798140) | 1e-13 | Click |
33 | 1706641..1707507 | PHAGE_Lactob_Lj965: putative antirepressor; CDR20291_1446; phage(gi41179234) | 1e-07 | Click |
34 | 1708372..1708899 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; CDR20291_1447; phage(gi134287353) | 4e-93 | Click |
35 | 1709037..1709804 | PHAGE_Thermo_THSA_485A: hypothetical protein; CDR20291_1448; phage(gi397912628) | 4e-35 | Click |
36 | 1709870..1712242 | PHAGE_Clostr_phiC2: putative tail tape measure protein; CDR20291_1449; phage(gi134287355) | 6e-167 | Click |
37 | 1712259..1712948 | PHAGE_Clostr_phiC2: putative LysM; CDR20291_1450; phage(gi134287356) | 1e-109 | Click |
38 | 1712956..1714833 | PHAGE_Clostr_phiC2: putative hydrolase; CDR20291_1451; phage(gi134287357) | 0.0 | Click |
39 | 1714847..1715107 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; CDR20291_1452; phage(gi134287358) | 1e-35 | Click |
40 | 1715112..1715531 | PHAGE_Strept_1: hypothetical protein EJ-1p60; CDR20291_1453; phage(gi39653734) | 6e-21 | Click |
41 | 1715544..1716581 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; CDR20291_1454; phage(gi134287359) | 0.0 | Click |
42 | 1716574..1717191 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; CDR20291_1455; phage(gi134287360) | 4e-115 | Click |
43 | 1717203..1718228 | PHAGE_Clostr_phiC2: putative tail fiber protein; CDR20291_1456; phage(gi134287361) | 8e-167 | Click |
44 | 1718245..1719771 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; CDR20291_1457; phage(gi209901263) | 1e-94 | Click |
45 | 1719786..1720079 | PHAGE_Clostr_phiCD6356: hypothetical protein; CDR20291_1458; phage(gi326536870) | 2e-40 | Click |
46 | 1720079..1720261 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; CDR20291_1459; phage(gi134287367) | 3e-26 | Click |
47 | 1720295..1720861 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; CDR20291_1460; phage(gi134287363) | 5e-12 | Click |
48 | 1721186..1721443 | PHAGE_Clostr_phiC2: holin; CDR20291_1461; phage(gi134287369) | 1e-43 | Click |
49 | 1721704..1722567 | PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; CDR20291_1462; phage(gi134287370) | 2e-166 | Click |
50 | 1722646..1723458 | PHAGE_Clostr_phiC2: putative amidase/endolysin; CDR20291_1463; phage(gi134287371) | 2e-143 | Click |
51 | 1723552..1725951 | PHAGE_Amsact_: Possible surface protein; CDR20291_1464; phage(gi9964577) | 1e-22 | Click |
52 | 1726818..1726837 | attR TATTACAACTTAAGTAAATA | N/A | Click |