Definition Clostridium difficile R20291 chromosome, complete genome.
Accession NC_013316
Length 4,191,339
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(271099..271392)  putative spore coat protein; CDR20291_0212  N/A  Click
2 complement(271398..271613)  hypothetical protein; CDR20291_0213  N/A  Click
3 complement(272158..272670)  putative nitroreductase; CDR20291_0214  N/A  Click
4 273120..273596  phosphoribosylaminoimidazole carboxylase catalytic subunit; CDR20291_0215  N/A  Click
5 273602..274300  PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; CDR20291_0216; phage(gi326784002)  2e-48  Click
6 274312..275679  PHAGE_Parame_FR483: hypothetical protein FR483_N035R; CDR20291_0217; phage(gi155370133)  6e-22  Click
7 275673..276749  PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; CDR20291_0218; phage(gi472340860)  3e-64  Click
8 276743..277336  PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; CDR20291_0219; phage(gi134288807)  1e-06  Click
9 277329..278861  PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; CDR20291_0220; phage(gi61806062)  5e-61  Click
10 278872..280122  phosphoribosylamine--glycine ligase; CDR20291_0221  N/A  Click
11 280147..283953  PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; CDR20291_0222; phage(gi149882852)  4e-36  Click
12 284159..285031  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; CDR20291_0223; phage(gi448260370)  1e-34  Click
13 285140..286021  PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; CDR20291_0224; phage(gi448260372)  2e-97  Click
14 286058..286615  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; CDR20291_0225; phage(gi448260371)  3e-46  Click
15 286653..287636  PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; CDR20291_0226; phage(gi448260373)  2e-73  Click
16 287612..288343  PHAGE_Pseudo_KPP12: putative lytic tail protein; CDR20291_0227; phage(gi431811119)  6e-17  Click
17 288352..288780  hypothetical protein; CDR20291_0228  N/A  Click
18 288804..289118  flagellar motor switch protein; CDR20291_0229  N/A  Click
19 289270..289545  PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; CDR20291_0230; phage(gi310831032)  9e-05  Click
20 289550..289966  putative flagellar biosynthesis protein; CDR20291_0231  N/A  Click
21 289984..291294  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CDR20291_0232; phage(gi9631364)  4e-08  Click
Region 2, total : 30 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1428004..1428204  PHAGE_Lactoc_bIL312: Csp; CDR20291_1197; phage(gi13095918)  6e-17  Click
2 1428625..1429053  putative regulatory protein; CDR20291_1198  N/A  Click
3 complement(1429196..1429981)  putative peptidyl-prolyl isomerase; CDR20291_1199  N/A  Click
4 complement(1430072..1430488)  hypothetical protein; CDR20291_1200  N/A  Click
5 complement(1430652..1431158)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CDR20291_1201; phage(gi209901280)  3e-10  Click
6 complement(1431240..1431560)  PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; CDR20291_1202; phage(gi399498895)  9e-13  Click
7 1431729..1431926  PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; CDR20291_1203; phage(gi17426238)  6e-06  Click
8 1432031..1432471  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; CDR20291_1204; phage(gi90592709)  8e-38  Click
9 1432720..1433163  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; CDR20291_1205; phage(gi90592649)  2e-24  Click
10 1433168..1434232  PHAGE_Clostr_phiMMP04: tail sheath; CDR20291_1206; phage(gi414090451)  2e-69  Click
11 1434246..1434674  PHAGE_Clostr_phiMMP04: XkdM-related protein; CDR20291_1207; phage(gi414090452)  8e-08  Click
12 1434788..1435234  PHAGE_Clostr_CD119: XkdN protein; CDR20291_1208; phage(gi90592652)  4e-15  Click
13 1435261..1435428  hypothetical protein; CDR20291_1209  N/A  Click
14 1435401..1437881  PHAGE_Clostr_phiMMP04: tail tape measure; CDR20291_1210; phage(gi414090455)  2e-22  Click
15 1437881..1438303  PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; CDR20291_1211; phage(gi414090456)  2e-47  Click
16 1438585..1440114  PHAGE_Clostr_phiMMP04: cell wall hydrolase; CDR20291_1212; phage(gi414090458)  2e-121  Click
17 1440130..1440456  PHAGE_Clostr_phiMMP04: hypothetical protein; CDR20291_1213; phage(gi414090459)  3e-55  Click
18 1440456..1440884  PHAGE_Clostr_phiMMP04: XkdS-related protein; CDR20291_1214; phage(gi414090460)  1e-63  Click
19 1440877..1441929  PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; CDR20291_1215; phage(gi414090461)  1e-140  Click
20 1441926..1442624  PHAGE_Clostr_phiMMP04: hypothetical protein; CDR20291_1216; phage(gi414090462)  2e-52  Click
21 1442625..1443611  PHAGE_Clostr_phiMMP04: tail fiber; CDR20291_1217; phage(gi414090463)  1e-49  Click
22 1443633..1448810  PHAGE_Bathyc_BpV1: hypothetical protein; CDR20291_1218; phage(gi313768166)  3e-20  Click
23 1449061..1449180  putative phage-related protein; CDR20291_1219  N/A  Click
24 1449443..1449703  PHAGE_Clostr_phiCD38_2: putative holin; CDR20291_1220; phage(gi333798129)  4e-37  Click
25 complement(1449928..1450383)  hypothetical protein; CDR20291_1221  N/A  Click
26 complement(1450611..1451030)  PHAGE_Strept_3: putative cI-like repressor; CDR20291_1222; phage(gi28876313)  6e-08  Click
27 1451329..1451538  PHAGE_Bacill_BCJA1c: cro; CDR20291_1223; phage(gi56694875)  4e-08  Click
28 1451558..1451779  hypothetical protein; CDR20291_1224  N/A  Click
29 complement(1451996..1452403)  PHAGE_Lister_A118: putative repressor protein; CDR20291_1225; phage(gi16798819)  1e-08  Click
30 complement(1452815..1455319)  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CDR20291_1226; phage(gi9631364)  2e-12  Click
Region 3, total : 50 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1670843..1670862  attL    TATTACAACTTAAGTAAATA  N/A  Click
2 complement(1671047..1672177)  PHAGE_Clostr_phiC2: putative integrase; CDR20291_1415; phage(gi134287379)  3e-137  Click
3 complement(1672256..1672963)  hypothetical protein; CDR20291_1416  N/A  Click
4 complement(1672976..1673845)  HipA-like protein; CDR20291_1417  N/A  Click
5 complement(1674465..1674971)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CDR20291_1418; phage(gi209901280)  4e-09  Click
6 1676376..1677185  PHAGE_Staphy_88: ORF019; CDR20291_1419; phage(gi66396351)  2e-57  Click
7 1678722..1679159  PHAGE_Entero_phiFL4A: hypothetical protein; CDR20291_1420; phage(gi281416448)  1e-08  Click
8 1679171..1680337  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; CDR20291_1421; phage(gi209363569)  3e-100  Click
9 1680740..1681312  hypothetical protein; CDR20291_1422  N/A  Click
10 1681335..1681907  PHAGE_Bacill_PBC1: hypothetical protein; CDR20291_1423; phage(gi389060352)  2e-52  Click
11 1681907..1683865  PHAGE_Bacill_PBC1: DNA polymerase; CDR20291_1424; phage(gi389060355)  0.0  Click
12 1683877..1686294  PHAGE_Entero_phiFL4A: VirE domain protein; CDR20291_1425; phage(gi281416460)  0.0  Click
13 1686851..1688221  PHAGE_Entero_phiFL4A: DNA helicase; CDR20291_1426; phage(gi281416462)  4e-154  Click
14 1688375..1688854  PHAGE_Clostr_PhiS63: gp40; CDR20291_1427; phage(gi388570666)  1e-40  Click
15 1689137..1689589  PHAGE_Clostr_phiMMP02: phage repressor; CDR20291_1428; phage(gi414090441)  2e-71  Click
16 1689881..1690855  hypothetical protein; CDR20291_1429  N/A  Click
17 1690876..1691385  hypothetical protein; CDR20291_1430  N/A  Click
18 1691455..1692147  PHAGE_Clostr_phiC2: putative terminase small subunit; CDR20291_1431; phage(gi134287336)  4e-127  Click
19 1692125..1693378  PHAGE_Clostr_phiC2: putative terminase large subunit; CDR20291_1432; phage(gi134287337)  0.0  Click
20 1693384..1694826  PHAGE_Clostr_phiC2: putative portal protein; CDR20291_1433; phage(gi134287338)  0.0  Click
21 1694816..1696351  PHAGE_Clostr_phiC2: putative head morphogenesis protein; CDR20291_1434; phage(gi134287339)  0.0  Click
22 1696669..1697232  PHAGE_Clostr_phiC2: putative scaffold protein; CDR20291_1435; phage(gi134287341)  4e-104  Click
23 1697244..1698134  PHAGE_Clostr_phiC2: putative main capsid protein; CDR20291_1436; phage(gi134287342)  5e-168  Click
24 1698387..1698797  PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; CDR20291_1437; phage(gi134287344)  2e-69  Click
25 1698791..1699138  PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; CDR20291_1438; phage(gi134287345)  3e-59  Click
26 1699517..1700344  PHAGE_Clostr_O: hypothetical protein 39-O_gp07; CDR20291_1439; phage(gi208429862)  5e-52  Click
27 1700693..1701130  PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; CDR20291_1440; phage(gi134287347)  8e-78  Click
28 1701300..1702610  PHAGE_Clostr_phiC2: putative sheath tail protein; CDR20291_1441; phage(gi134287348)  0.0  Click
29 1702627..1703097  PHAGE_Clostr_phiC2: putative core tail; CDR20291_1442; phage(gi134287349)  5e-73  Click
30 1703156..1703983  PHAGE_Clostr_phiCP26F: hypothetical protein; CDR20291_1443; phage(gi422933952)  5e-42  Click
31 1704055..1704495  PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; CDR20291_1444; phage(gi134287351)  2e-49  Click
32 1704836..1704997  PHAGE_Clostr_phiCD38_2: hypothetical protein; CDR20291_1445; phage(gi333798140)  1e-13  Click
33 1706641..1707507  PHAGE_Lactob_Lj965: putative antirepressor; CDR20291_1446; phage(gi41179234)  1e-07  Click
34 1708372..1708899  PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; CDR20291_1447; phage(gi134287353)  4e-93  Click
35 1709037..1709804  PHAGE_Thermo_THSA_485A: hypothetical protein; CDR20291_1448; phage(gi397912628)  4e-35  Click
36 1709870..1712242  PHAGE_Clostr_phiC2: putative tail tape measure protein; CDR20291_1449; phage(gi134287355)  6e-167  Click
37 1712259..1712948  PHAGE_Clostr_phiC2: putative LysM; CDR20291_1450; phage(gi134287356)  1e-109  Click
38 1712956..1714833  PHAGE_Clostr_phiC2: putative hydrolase; CDR20291_1451; phage(gi134287357)  0.0  Click
39 1714847..1715107  PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; CDR20291_1452; phage(gi134287358)  1e-35  Click
40 1715112..1715531  PHAGE_Strept_1: hypothetical protein EJ-1p60; CDR20291_1453; phage(gi39653734)  6e-21  Click
41 1715544..1716581  PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; CDR20291_1454; phage(gi134287359)  0.0  Click
42 1716574..1717191  PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; CDR20291_1455; phage(gi134287360)  4e-115  Click
43 1717203..1718228  PHAGE_Clostr_phiC2: putative tail fiber protein; CDR20291_1456; phage(gi134287361)  8e-167  Click
44 1718245..1719771  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; CDR20291_1457; phage(gi209901263)  1e-94  Click
45 1719786..1720079  PHAGE_Clostr_phiCD6356: hypothetical protein; CDR20291_1458; phage(gi326536870)  2e-40  Click
46 1720079..1720261  PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; CDR20291_1459; phage(gi134287367)  3e-26  Click
47 1720295..1720861  PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; CDR20291_1460; phage(gi134287363)  5e-12  Click
48 1721186..1721443  PHAGE_Clostr_phiC2: holin; CDR20291_1461; phage(gi134287369)  1e-43  Click
49 1721704..1722567  PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; CDR20291_1462; phage(gi134287370)  2e-166  Click
50 1722646..1723458  PHAGE_Clostr_phiC2: putative amidase/endolysin; CDR20291_1463; phage(gi134287371)  2e-143  Click
51 1723552..1725951  PHAGE_Amsact_: Possible surface protein; CDR20291_1464; phage(gi9964577)  1e-22  Click
52 1726818..1726837  attR    TATTACAACTTAAGTAAATA  N/A  Click