Definition | Clostridium difficile CD196 chromosome, complete genome. |
---|---|
Accession | NC_013315 |
Length | 4,110,554 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 21 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(273673..273966) | putative spore coat protein; CD196_0225 | N/A | Click |
2 | complement(273972..274187) | hypothetical protein; CD196_0226 | N/A | Click |
3 | complement(274732..275244) | putative nitroreductase; CD196_0227 | N/A | Click |
4 | 275694..276170 | phosphoribosylaminoimidazole carboxylase catalytic subunit; CD196_0228 | N/A | Click |
5 | 276176..276874 | PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; CD196_0229; phage(gi326784002) | 2e-48 | Click |
6 | 276886..278253 | PHAGE_Parame_FR483: hypothetical protein FR483_N035R; CD196_0230; phage(gi155370133) | 6e-22 | Click |
7 | 278247..279323 | PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; CD196_0231; phage(gi472340860) | 3e-64 | Click |
8 | 279317..279910 | PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; CD196_0232; phage(gi134288807) | 1e-06 | Click |
9 | 279903..281435 | PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; CD196_0233; phage(gi61806062) | 5e-61 | Click |
10 | 281446..282696 | phosphoribosylamine--glycine ligase; CD196_0234 | N/A | Click |
11 | 282721..286527 | PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; CD196_0235; phage(gi149882852) | 4e-36 | Click |
12 | 286733..287605 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; CD196_0236; phage(gi448260370) | 1e-34 | Click |
13 | 287714..288595 | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; CD196_0237; phage(gi448260372) | 2e-97 | Click |
14 | 288632..289189 | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; CD196_0238; phage(gi448260371) | 3e-46 | Click |
15 | 289227..290210 | PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; CD196_0239; phage(gi448260373) | 2e-73 | Click |
16 | 290186..290917 | PHAGE_Pseudo_KPP12: putative lytic tail protein; CD196_0240; phage(gi431811119) | 6e-17 | Click |
17 | 290926..291354 | hypothetical protein; CD196_0241 | N/A | Click |
18 | 291378..291692 | flagellar motor switch protein; CD196_0242 | N/A | Click |
19 | 291844..292119 | PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; CD196_0243; phage(gi310831032) | 9e-05 | Click |
20 | 292124..292540 | putative flagellar biosynthesis protein; CD196_0244 | N/A | Click |
21 | 292558..293868 | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CD196_0245; phage(gi9631364) | 4e-08 | Click |
Region 2, total : 30 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1430383..1430583 | PHAGE_Lactoc_bIL312: Csp; CD196_1219; phage(gi13095918) | 6e-17 | Click |
2 | 1431004..1431432 | putative regulatory protein; CD196_1220 | N/A | Click |
3 | complement(1431575..1432360) | putative peptidyl-prolyl isomerase; CD196_1221 | N/A | Click |
4 | complement(1432451..1432867) | hypothetical protein; CD196_1222 | N/A | Click |
5 | complement(1433031..1433537) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CD196_1223; phage(gi209901280) | 3e-10 | Click |
6 | complement(1433619..1433939) | PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; CD196_1224; phage(gi399498895) | 9e-13 | Click |
7 | 1434108..1434305 | PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; CD196_1225; phage(gi17426238) | 6e-06 | Click |
8 | 1434410..1434850 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; CD196_1226; phage(gi90592709) | 8e-38 | Click |
9 | 1435099..1435542 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; CD196_1227; phage(gi90592649) | 2e-24 | Click |
10 | 1435547..1436611 | PHAGE_Clostr_phiMMP04: tail sheath; CD196_1228; phage(gi414090451) | 2e-69 | Click |
11 | 1436625..1437053 | PHAGE_Clostr_phiMMP04: XkdM-related protein; CD196_1229; phage(gi414090452) | 8e-08 | Click |
12 | 1437167..1437613 | PHAGE_Clostr_CD119: XkdN protein; CD196_1230; phage(gi90592652) | 4e-15 | Click |
13 | 1437640..1437807 | hypothetical protein; CD196_1231 | N/A | Click |
14 | 1437780..1440260 | PHAGE_Clostr_phiMMP04: tail tape measure; CD196_1232; phage(gi414090455) | 2e-22 | Click |
15 | 1440260..1440682 | PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; CD196_1233; phage(gi414090456) | 2e-47 | Click |
16 | 1440964..1442493 | PHAGE_Clostr_phiMMP04: cell wall hydrolase; CD196_1234; phage(gi414090458) | 2e-121 | Click |
17 | 1442509..1442835 | PHAGE_Clostr_phiMMP04: hypothetical protein; CD196_1235; phage(gi414090459) | 3e-55 | Click |
18 | 1442835..1443263 | PHAGE_Clostr_phiMMP04: XkdS-related protein; CD196_1236; phage(gi414090460) | 1e-63 | Click |
19 | 1443256..1444308 | PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; CD196_1237; phage(gi414090461) | 1e-140 | Click |
20 | 1444305..1445003 | PHAGE_Clostr_phiMMP04: hypothetical protein; CD196_1238; phage(gi414090462) | 2e-52 | Click |
21 | 1445004..1445990 | PHAGE_Clostr_phiMMP04: tail fiber; CD196_1239; phage(gi414090463) | 1e-49 | Click |
22 | 1446012..1451189 | PHAGE_Bathyc_BpV1: hypothetical protein; CD196_1240; phage(gi313768166) | 3e-20 | Click |
23 | 1451440..1451559 | hypothetical protein; CD196_1241 | N/A | Click |
24 | 1451822..1452082 | PHAGE_Clostr_phiCD38_2: putative holin; CD196_1242; phage(gi333798129) | 4e-37 | Click |
25 | complement(1452307..1452762) | hypothetical protein; CD196_1243 | N/A | Click |
26 | complement(1452990..1453409) | PHAGE_Strept_3: putative cI-like repressor; CD196_1244; phage(gi28876313) | 6e-08 | Click |
27 | 1453708..1453917 | PHAGE_Bacill_BCJA1c: cro; CD196_1245; phage(gi56694875) | 4e-08 | Click |
28 | 1453937..1454158 | hypothetical protein; CD196_1246 | N/A | Click |
29 | complement(1454375..1454782) | PHAGE_Lister_A118: putative repressor protein; CD196_1247; phage(gi16798819) | 1e-08 | Click |
30 | complement(1455194..1457698) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CD196_1248; phage(gi9631364) | 2e-12 | Click |
Region 3, total : 52 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1673218..1673237 | attL TATTACAACTTAAGTAAATA | N/A | Click |
2 | complement(1673422..1674552) | PHAGE_Clostr_phiC2: putative integrase; CD196_1438; phage(gi134287379) | 3e-137 | Click |
3 | complement(1674631..1675338) | hiran domain family; CD196_1439 | N/A | Click |
4 | complement(1675351..1676220) | HipA-like protein; CD196_1440 | N/A | Click |
5 | complement(1676840..1677346) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CD196_1441; phage(gi209901280) | 4e-09 | Click |
6 | 1679555..1680328 | PHAGE_Lactob_Lj965: putative antirepressor; CD196_1442; phage(gi41179234) | 5e-29 | Click |
7 | 1680334..1681137 | PHAGE_Brocho_BL3: gp34; CD196_1443; phage(gi327409426) | 2e-53 | Click |
8 | 1681109..1681786 | hypothetical protein; CD196_1444 | N/A | Click |
9 | 1682859..1683296 | PHAGE_Entero_phiFL4A: hypothetical protein; CD196_1445; phage(gi281416448) | 1e-08 | Click |
10 | 1683308..1684474 | PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; CD196_1446; phage(gi209363569) | 8e-100 | Click |
11 | 1684877..1685449 | hypothetical protein; CD196_1447 | N/A | Click |
12 | 1685472..1686044 | PHAGE_Bacill_PBC1: hypothetical protein; CD196_1448; phage(gi389060352) | 3e-52 | Click |
13 | 1686044..1688002 | PHAGE_Bacill_PBC1: DNA polymerase; CD196_1449; phage(gi389060355) | 0.0 | Click |
14 | 1688014..1690431 | PHAGE_Entero_phiFL4A: VirE domain protein; CD196_1450; phage(gi281416460) | 0.0 | Click |
15 | 1690988..1692358 | PHAGE_Entero_phiFL4A: DNA helicase; CD196_1451; phage(gi281416462) | 4e-154 | Click |
16 | 1692512..1692991 | PHAGE_Clostr_PhiS63: gp40; CD196_1452; phage(gi388570666) | 1e-40 | Click |
17 | 1693274..1693726 | PHAGE_Clostr_phiMMP02: phage repressor; CD196_1453; phage(gi414090441) | 2e-71 | Click |
18 | 1694018..1694992 | hypothetical protein; CD196_1454 | N/A | Click |
19 | 1695013..1695522 | hypothetical protein; CD196_1455 | N/A | Click |
20 | 1695592..1696284 | PHAGE_Clostr_phiC2: putative terminase small subunit; CD196_1456; phage(gi134287336) | 4e-127 | Click |
21 | 1696262..1697515 | PHAGE_Clostr_phiC2: putative terminase large subunit; CD196_1457; phage(gi134287337) | 0.0 | Click |
22 | 1697521..1698963 | PHAGE_Clostr_phiC2: putative portal protein; CD196_1458; phage(gi134287338) | 0.0 | Click |
23 | 1698953..1700488 | PHAGE_Clostr_phiC2: putative head morphogenesis protein; CD196_1459; phage(gi134287339) | 0.0 | Click |
24 | 1700806..1701369 | PHAGE_Clostr_phiC2: putative scaffold protein; CD196_1460; phage(gi134287341) | 4e-104 | Click |
25 | 1701381..1702271 | PHAGE_Clostr_phiC2: putative main capsid protein; CD196_1461; phage(gi134287342) | 5e-168 | Click |
26 | 1702524..1702934 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; CD196_1462; phage(gi134287344) | 2e-69 | Click |
27 | 1702928..1703275 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; CD196_1463; phage(gi134287345) | 3e-59 | Click |
28 | 1703654..1704481 | PHAGE_Clostr_O: hypothetical protein 39-O_gp07; CD196_1464; phage(gi208429862) | 5e-52 | Click |
29 | 1704830..1705267 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; CD196_1465; phage(gi134287347) | 8e-78 | Click |
30 | 1705437..1706747 | PHAGE_Clostr_phiC2: putative sheath tail protein; CD196_1466; phage(gi134287348) | 0.0 | Click |
31 | 1706764..1707234 | PHAGE_Clostr_phiC2: putative core tail; CD196_1467; phage(gi134287349) | 5e-73 | Click |
32 | 1707293..1708120 | PHAGE_Clostr_phiCP26F: hypothetical protein; CD196_1468; phage(gi422933952) | 5e-42 | Click |
33 | 1708192..1708632 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; CD196_1469; phage(gi134287351) | 2e-49 | Click |
34 | 1708973..1709134 | PHAGE_Clostr_phiCD38_2: hypothetical protein; CD196_1470; phage(gi333798140) | 1e-13 | Click |
35 | 1710778..1711644 | PHAGE_Lactob_Lj965: putative antirepressor; CD196_1471; phage(gi41179234) | 1e-07 | Click |
36 | 1712509..1713036 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; CD196_1472; phage(gi134287353) | 4e-93 | Click |
37 | 1713174..1713941 | PHAGE_Thermo_THSA_485A: hypothetical protein; CD196_1473; phage(gi397912628) | 4e-35 | Click |
38 | 1714007..1716379 | PHAGE_Clostr_phiC2: putative tail tape measure protein; CD196_1474; phage(gi134287355) | 6e-167 | Click |
39 | 1716396..1717085 | PHAGE_Clostr_phiC2: putative LysM; CD196_1475; phage(gi134287356) | 1e-109 | Click |
40 | 1717093..1718970 | PHAGE_Clostr_phiC2: putative hydrolase; CD196_1476; phage(gi134287357) | 0.0 | Click |
41 | 1718984..1719244 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; CD196_1477; phage(gi134287358) | 1e-35 | Click |
42 | 1719249..1719668 | PHAGE_Strept_1: hypothetical protein EJ-1p60; CD196_1478; phage(gi39653734) | 6e-21 | Click |
43 | 1719681..1720718 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; CD196_1479; phage(gi134287359) | 0.0 | Click |
44 | 1720711..1721328 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; CD196_1480; phage(gi134287360) | 4e-115 | Click |
45 | 1721340..1722365 | PHAGE_Clostr_phiC2: putative tail fiber protein; CD196_1481; phage(gi134287361) | 8e-167 | Click |
46 | 1722382..1723908 | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; CD196_1482; phage(gi209901263) | 1e-94 | Click |
47 | 1723923..1724216 | PHAGE_Clostr_phiCD6356: hypothetical protein; CD196_1483; phage(gi326536870) | 2e-40 | Click |
48 | 1724216..1724398 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; CD196_1484; phage(gi134287367) | 3e-26 | Click |
49 | 1724432..1724998 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; CD196_1485; phage(gi134287363) | 5e-12 | Click |
50 | 1725323..1725580 | PHAGE_Clostr_phiC2: holin; CD196_1486; phage(gi134287369) | 1e-43 | Click |
51 | 1725841..1726704 | PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; CD196_1487; phage(gi134287370) | 2e-166 | Click |
52 | 1726783..1727595 | PHAGE_Clostr_phiC2: putative amidase/endolysin; CD196_1488; phage(gi134287371) | 2e-143 | Click |
53 | 1727689..1730088 | PHAGE_Amsact_: Possible surface protein; CD196_1489; phage(gi9964577) | 1e-22 | Click |
54 | 1730955..1730974 | attR TATTACAACTTAAGTAAATA | N/A | Click |