Definition Clostridium difficile CD196 chromosome, complete genome.
Accession NC_013315
Length 4,110,554
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 21 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(273673..273966)  putative spore coat protein; CD196_0225  N/A  Click
2 complement(273972..274187)  hypothetical protein; CD196_0226  N/A  Click
3 complement(274732..275244)  putative nitroreductase; CD196_0227  N/A  Click
4 275694..276170  phosphoribosylaminoimidazole carboxylase catalytic subunit; CD196_0228  N/A  Click
5 276176..276874  PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; CD196_0229; phage(gi326784002)  2e-48  Click
6 276886..278253  PHAGE_Parame_FR483: hypothetical protein FR483_N035R; CD196_0230; phage(gi155370133)  6e-22  Click
7 278247..279323  PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; CD196_0231; phage(gi472340860)  3e-64  Click
8 279317..279910  PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; CD196_0232; phage(gi134288807)  1e-06  Click
9 279903..281435  PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; CD196_0233; phage(gi61806062)  5e-61  Click
10 281446..282696  phosphoribosylamine--glycine ligase; CD196_0234  N/A  Click
11 282721..286527  PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; CD196_0235; phage(gi149882852)  4e-36  Click
12 286733..287605  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; CD196_0236; phage(gi448260370)  1e-34  Click
13 287714..288595  PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; CD196_0237; phage(gi448260372)  2e-97  Click
14 288632..289189  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; CD196_0238; phage(gi448260371)  3e-46  Click
15 289227..290210  PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; CD196_0239; phage(gi448260373)  2e-73  Click
16 290186..290917  PHAGE_Pseudo_KPP12: putative lytic tail protein; CD196_0240; phage(gi431811119)  6e-17  Click
17 290926..291354  hypothetical protein; CD196_0241  N/A  Click
18 291378..291692  flagellar motor switch protein; CD196_0242  N/A  Click
19 291844..292119  PHAGE_Cafete_BV_PW1: putative RecQ-like ATP-dependent DNA helicase; CD196_0243; phage(gi310831032)  9e-05  Click
20 292124..292540  putative flagellar biosynthesis protein; CD196_0244  N/A  Click
21 292558..293868  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CD196_0245; phage(gi9631364)  4e-08  Click
Region 2, total : 30 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1430383..1430583  PHAGE_Lactoc_bIL312: Csp; CD196_1219; phage(gi13095918)  6e-17  Click
2 1431004..1431432  putative regulatory protein; CD196_1220  N/A  Click
3 complement(1431575..1432360)  putative peptidyl-prolyl isomerase; CD196_1221  N/A  Click
4 complement(1432451..1432867)  hypothetical protein; CD196_1222  N/A  Click
5 complement(1433031..1433537)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CD196_1223; phage(gi209901280)  3e-10  Click
6 complement(1433619..1433939)  PHAGE_Staphy_SpaA1: XRE family transcriptional regulator; CD196_1224; phage(gi399498895)  9e-13  Click
7 1434108..1434305  PHAGE_Staphy_phiETA: hypothetical protein phiETA_10; CD196_1225; phage(gi17426238)  6e-06  Click
8 1434410..1434850  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp73; CD196_1226; phage(gi90592709)  8e-38  Click
9 1435099..1435542  PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp13; CD196_1227; phage(gi90592649)  2e-24  Click
10 1435547..1436611  PHAGE_Clostr_phiMMP04: tail sheath; CD196_1228; phage(gi414090451)  2e-69  Click
11 1436625..1437053  PHAGE_Clostr_phiMMP04: XkdM-related protein; CD196_1229; phage(gi414090452)  8e-08  Click
12 1437167..1437613  PHAGE_Clostr_CD119: XkdN protein; CD196_1230; phage(gi90592652)  4e-15  Click
13 1437640..1437807  hypothetical protein; CD196_1231  N/A  Click
14 1437780..1440260  PHAGE_Clostr_phiMMP04: tail tape measure; CD196_1232; phage(gi414090455)  2e-22  Click
15 1440260..1440682  PHAGE_Clostr_phiMMP04: peptidoglycan-binding lysin domain protein; CD196_1233; phage(gi414090456)  2e-47  Click
16 1440964..1442493  PHAGE_Clostr_phiMMP04: cell wall hydrolase; CD196_1234; phage(gi414090458)  2e-121  Click
17 1442509..1442835  PHAGE_Clostr_phiMMP04: hypothetical protein; CD196_1235; phage(gi414090459)  3e-55  Click
18 1442835..1443263  PHAGE_Clostr_phiMMP04: XkdS-related protein; CD196_1236; phage(gi414090460)  1e-63  Click
19 1443256..1444308  PHAGE_Clostr_phiMMP04: baseplate J-like assembly protein; CD196_1237; phage(gi414090461)  1e-140  Click
20 1444305..1445003  PHAGE_Clostr_phiMMP04: hypothetical protein; CD196_1238; phage(gi414090462)  2e-52  Click
21 1445004..1445990  PHAGE_Clostr_phiMMP04: tail fiber; CD196_1239; phage(gi414090463)  1e-49  Click
22 1446012..1451189  PHAGE_Bathyc_BpV1: hypothetical protein; CD196_1240; phage(gi313768166)  3e-20  Click
23 1451440..1451559  hypothetical protein; CD196_1241  N/A  Click
24 1451822..1452082  PHAGE_Clostr_phiCD38_2: putative holin; CD196_1242; phage(gi333798129)  4e-37  Click
25 complement(1452307..1452762)  hypothetical protein; CD196_1243  N/A  Click
26 complement(1452990..1453409)  PHAGE_Strept_3: putative cI-like repressor; CD196_1244; phage(gi28876313)  6e-08  Click
27 1453708..1453917  PHAGE_Bacill_BCJA1c: cro; CD196_1245; phage(gi56694875)  4e-08  Click
28 1453937..1454158  hypothetical protein; CD196_1246  N/A  Click
29 complement(1454375..1454782)  PHAGE_Lister_A118: putative repressor protein; CD196_1247; phage(gi16798819)  1e-08  Click
30 complement(1455194..1457698)  PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CD196_1248; phage(gi9631364)  2e-12  Click
Region 3, total : 52 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1673218..1673237  attL    TATTACAACTTAAGTAAATA  N/A  Click
2 complement(1673422..1674552)  PHAGE_Clostr_phiC2: putative integrase; CD196_1438; phage(gi134287379)  3e-137  Click
3 complement(1674631..1675338)  hiran domain family; CD196_1439  N/A  Click
4 complement(1675351..1676220)  HipA-like protein; CD196_1440  N/A  Click
5 complement(1676840..1677346)  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CD196_1441; phage(gi209901280)  4e-09  Click
6 1679555..1680328  PHAGE_Lactob_Lj965: putative antirepressor; CD196_1442; phage(gi41179234)  5e-29  Click
7 1680334..1681137  PHAGE_Brocho_BL3: gp34; CD196_1443; phage(gi327409426)  2e-53  Click
8 1681109..1681786  hypothetical protein; CD196_1444  N/A  Click
9 1682859..1683296  PHAGE_Entero_phiFL4A: hypothetical protein; CD196_1445; phage(gi281416448)  1e-08  Click
10 1683308..1684474  PHAGE_Staphy_phi2958PVL: hypothetical protein phi2958PVL_gp17; CD196_1446; phage(gi209363569)  8e-100  Click
11 1684877..1685449  hypothetical protein; CD196_1447  N/A  Click
12 1685472..1686044  PHAGE_Bacill_PBC1: hypothetical protein; CD196_1448; phage(gi389060352)  3e-52  Click
13 1686044..1688002  PHAGE_Bacill_PBC1: DNA polymerase; CD196_1449; phage(gi389060355)  0.0  Click
14 1688014..1690431  PHAGE_Entero_phiFL4A: VirE domain protein; CD196_1450; phage(gi281416460)  0.0  Click
15 1690988..1692358  PHAGE_Entero_phiFL4A: DNA helicase; CD196_1451; phage(gi281416462)  4e-154  Click
16 1692512..1692991  PHAGE_Clostr_PhiS63: gp40; CD196_1452; phage(gi388570666)  1e-40  Click
17 1693274..1693726  PHAGE_Clostr_phiMMP02: phage repressor; CD196_1453; phage(gi414090441)  2e-71  Click
18 1694018..1694992  hypothetical protein; CD196_1454  N/A  Click
19 1695013..1695522  hypothetical protein; CD196_1455  N/A  Click
20 1695592..1696284  PHAGE_Clostr_phiC2: putative terminase small subunit; CD196_1456; phage(gi134287336)  4e-127  Click
21 1696262..1697515  PHAGE_Clostr_phiC2: putative terminase large subunit; CD196_1457; phage(gi134287337)  0.0  Click
22 1697521..1698963  PHAGE_Clostr_phiC2: putative portal protein; CD196_1458; phage(gi134287338)  0.0  Click
23 1698953..1700488  PHAGE_Clostr_phiC2: putative head morphogenesis protein; CD196_1459; phage(gi134287339)  0.0  Click
24 1700806..1701369  PHAGE_Clostr_phiC2: putative scaffold protein; CD196_1460; phage(gi134287341)  4e-104  Click
25 1701381..1702271  PHAGE_Clostr_phiC2: putative main capsid protein; CD196_1461; phage(gi134287342)  5e-168  Click
26 1702524..1702934  PHAGE_Clostr_phiC2: hypothetical protein phiC2p09; CD196_1462; phage(gi134287344)  2e-69  Click
27 1702928..1703275  PHAGE_Clostr_phiC2: hypothetical protein phiC2p10; CD196_1463; phage(gi134287345)  3e-59  Click
28 1703654..1704481  PHAGE_Clostr_O: hypothetical protein 39-O_gp07; CD196_1464; phage(gi208429862)  5e-52  Click
29 1704830..1705267  PHAGE_Clostr_phiC2: hypothetical protein phiC2p12; CD196_1465; phage(gi134287347)  8e-78  Click
30 1705437..1706747  PHAGE_Clostr_phiC2: putative sheath tail protein; CD196_1466; phage(gi134287348)  0.0  Click
31 1706764..1707234  PHAGE_Clostr_phiC2: putative core tail; CD196_1467; phage(gi134287349)  5e-73  Click
32 1707293..1708120  PHAGE_Clostr_phiCP26F: hypothetical protein; CD196_1468; phage(gi422933952)  5e-42  Click
33 1708192..1708632  PHAGE_Clostr_phiC2: hypothetical protein phiC2p16; CD196_1469; phage(gi134287351)  2e-49  Click
34 1708973..1709134  PHAGE_Clostr_phiCD38_2: hypothetical protein; CD196_1470; phage(gi333798140)  1e-13  Click
35 1710778..1711644  PHAGE_Lactob_Lj965: putative antirepressor; CD196_1471; phage(gi41179234)  1e-07  Click
36 1712509..1713036  PHAGE_Clostr_phiC2: hypothetical protein phiC2p18; CD196_1472; phage(gi134287353)  4e-93  Click
37 1713174..1713941  PHAGE_Thermo_THSA_485A: hypothetical protein; CD196_1473; phage(gi397912628)  4e-35  Click
38 1714007..1716379  PHAGE_Clostr_phiC2: putative tail tape measure protein; CD196_1474; phage(gi134287355)  6e-167  Click
39 1716396..1717085  PHAGE_Clostr_phiC2: putative LysM; CD196_1475; phage(gi134287356)  1e-109  Click
40 1717093..1718970  PHAGE_Clostr_phiC2: putative hydrolase; CD196_1476; phage(gi134287357)  0.0  Click
41 1718984..1719244  PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; CD196_1477; phage(gi134287358)  1e-35  Click
42 1719249..1719668  PHAGE_Strept_1: hypothetical protein EJ-1p60; CD196_1478; phage(gi39653734)  6e-21  Click
43 1719681..1720718  PHAGE_Clostr_phiC2: hypothetical protein phiC2p25; CD196_1479; phage(gi134287359)  0.0  Click
44 1720711..1721328  PHAGE_Clostr_phiC2: hypothetical protein phiC2p26; CD196_1480; phage(gi134287360)  4e-115  Click
45 1721340..1722365  PHAGE_Clostr_phiC2: putative tail fiber protein; CD196_1481; phage(gi134287361)  8e-167  Click
46 1722382..1723908  PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp26; CD196_1482; phage(gi209901263)  1e-94  Click
47 1723923..1724216  PHAGE_Clostr_phiCD6356: hypothetical protein; CD196_1483; phage(gi326536870)  2e-40  Click
48 1724216..1724398  PHAGE_Clostr_phiC2: hypothetical protein phiC2p34; CD196_1484; phage(gi134287367)  3e-26  Click
49 1724432..1724998  PHAGE_Clostr_phiC2: hypothetical protein phiC2p30; CD196_1485; phage(gi134287363)  5e-12  Click
50 1725323..1725580  PHAGE_Clostr_phiC2: holin; CD196_1486; phage(gi134287369)  1e-43  Click
51 1725841..1726704  PHAGE_Clostr_phiC2: putative abortive infection bacteriophage resistance protein ORF 37; CD196_1487; phage(gi134287370)  2e-166  Click
52 1726783..1727595  PHAGE_Clostr_phiC2: putative amidase/endolysin; CD196_1488; phage(gi134287371)  2e-143  Click
53 1727689..1730088  PHAGE_Amsact_: Possible surface protein; CD196_1489; phage(gi9964577)  1e-22  Click
54 1730955..1730974  attR    TATTACAACTTAAGTAAATA  N/A  Click