Definition Nakamurella multipartita DSM 44233 chromosome, complete genome.
Accession NC_013235
Length 6,060,298
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1322412..1323158  PROPHAGE_Escher_MG1655: protease specific for Gcp(YgjD), essential for nucleoid maintanence; Namu_1202; phage(gi16129761)  1e-09  Click
2 1323155..1323607  PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp13; Namu_1203; phage(gi48697203)  2e-06  Click
3 1323604..1324668  PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; Namu_1204; phage(gi16130960)  8e-72  Click
4 1324805..1324816  attL    GTGTCGATGACC  N/A  Click
5 1324811..1325254  hypothetical protein; Namu_1205  N/A  Click
6 1325371..1325769  hypothetical protein; Namu_1206  N/A  Click
7 1325975..1326274  PHAGE_Bacill_36: GroES; Namu_1207; phage(gi156564025)  8e-15  Click
8 1326457..1328088  PHAGE_Halocy_JM_2012: chaperonin GroEL; Namu_1208; phage(gi389060206)  1e-53  Click
9 complement(1328394..1328678)  PHAGE_Mycoba_Ramsey: gp57; Namu_1209; phage(gi206600238)  9e-10  Click
10 1329266..1329862  LuxR family two component transcriptional regulator; Namu_1210  N/A  Click
11 1330059..1330667  LuxR family transcriptional regulator; Namu_1211  N/A  Click
12 1330667..1331944  PHAGE_Equid__1: envelope glycoprotein J; Namu_1212; phage(gi50313312)  3e-14  Click
13 1332067..1333608  PHAGE_Staphy_42E: ORF012; Namu_1213; phage(gi66395520)  2e-31  Click
14 complement(1336249..1336782)  PROPHAGE_Escher_CFT073: transposase/IS protein; Namu_1214; phage(gi26248359)  2e-20  Click
15 1336595..1336606  attR    GTGTCGATGACC  N/A  Click
16 1336864..1338045  PHAGE_Lactoc_bIL310: integrase; Namu_1215; phage(gi13095863)  6e-08  Click
Region 2, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1383195..1383209  attL    GTCCCGGTTCGGGTC  N/A  Click
2 1390299..1391309  PHAGE_Papiin_2: envelope glycoprotein G; Namu_1267; phage(gi83722632)  3e-07  Click
3 1391382..1392254  hypothetical protein; Namu_1268  N/A  Click
4 1392320..1393780  PHAGE_Mycoba_Gumball: gp62; Namu_1269; phage(gi206599766)  7e-05  Click
5 complement(1393796..1395577)  PHAGE_Papiin_2: large tegument protein; Namu_1270; phage(gi83722605)  2e-06  Click
6 1395753..1396379  PHAGE_Prochl_P_SSM7: PRGA-formyltransferase; Namu_1271; phage(gi326784531)  8e-24  Click
7 1396376..1397947  PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; Namu_1272; phage(gi61806062)  1e-65  Click
8 1397990..1398610  PHAGE_Entero_ST104: ORF19; Namu_1273; phage(gi46358666)  1e-11  Click
9 1398745..1399455  hypothetical protein; Namu_1274  N/A  Click
10 1399785..1400831  transposase IS116/IS110/IS902 family protein; Namu_1275  N/A  Click
11 complement(1400862..1401221)  PHAGE_Lymant_MNPV: mucin-like protein; Namu_1276; phage(gi292397678)  5e-08  Click
12 1401289..1401924  hypothetical protein; Namu_1277  N/A  Click
13 1401949..1402812  methylenetetrahydrofolate dehydrogenase (NADP(+)); Namu_1278  N/A  Click
14 1402809..1403075  hypothetical protein; Namu_1279  N/A  Click
15 complement(1403086..1403547)  MarR family transcriptional regulator; Namu_1280  N/A  Click
16 1403749..1404963  isocitrate dehydrogenase; Namu_1281  N/A  Click
17 complement(1405093..1406493)  transposase IS116/IS110/IS902 family protein; Namu_1282  N/A  Click
18 1407968..1408561  hypothetical protein; Namu_1284  N/A  Click
19 1408444..1408458  attR    GTCCCGGTTCGGGTC  N/A  Click
20 1408673..1410154  PROPHAGE_Xantho_306: ISxac2 transposase; Namu_1285; phage(gi21244662)  2e-13  Click
Region 3, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3819084..3819096  attL    CCGGCGGGCCGCC  N/A  Click
2 3820047..3820059  attL    CTCGGTCAGGCTG  N/A  Click
3 complement(3827691..3829994)  PHAGE_Coryne_BFK20: gp15, minor tail protein; Namu_3481; phage(gi157168388)  2e-32  Click
4 3830055..3830381  PROPHAGE_Escher_Sakai: putative transposase; Namu_3482; phage(gi15832212)  2e-18  Click
5 3830429..3831334  PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Namu_3483; phage(gi17975200)  2e-85  Click
6 complement(3831362..3832591)  PHAGE_Coryne_BFK20: gp15, minor tail protein; tail; phage length tape measure motif protein; Namu_3484(gi157168388)  2e-53  Click
7 complement(3832872..3834308)  PHAGE_Mycoba_LeBron: gp4; Namu_3485; phage(gi304360953)  5e-40  Click
8 complement(3834308..3834511)  hypothetical protein; Namu_3486  N/A  Click
9 complement(3834789..3835682)  PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Namu_3487; phage(gi17975200)  1e-06  Click
10 complement(3835877..3836221)  hypothetical protein; Namu_3488  N/A  Click
11 complement(3836296..3836448)  hypothetical protein; Namu_3489  N/A  Click
12 complement(3836455..3837171)  hypothetical protein; Namu_3490  N/A  Click
13 complement(3837183..3837575)  excisionase family DNA binding domain-containing protein; Namu_3491  N/A  Click
14 complement(3837572..3837856)  hypothetical protein; Namu_3492  N/A  Click
15 complement(3838038..3838253)  hypothetical protein; Namu_3493  N/A  Click
16 complement(3838250..3839464)  PHAGE_Coryne_BFK20: gp43, RepA like protein; Namu_3494; phage(gi157168416)  4e-07  Click
17 3839725..3840000  hypothetical protein; Namu_3495  N/A  Click
18 3840036..3840048  attR    CTCGGTCAGGCTG  N/A  Click
19 complement(3840041..3840235)  PHAGE_Mycoba_Che12: gp39; Namu_3496; phage(gi109392489)  2e-06  Click
20 complement(3840542..3841423)  PROPHAGE_Escher_CFT073: transposase insF; Namu_3497; phage(gi26250329)  7e-33  Click
21 complement(3841444..3841731)  PHAGE_Lactob_phiAT3: putative transposase A; Namu_3498; phage(gi48697273)  2e-07  Click
22 complement(3842275..3843381)  PHAGE_Mycoba_SWU1: integrase; Namu_3499; phage(gi388570553)  1e-55  Click
23 3852652..3852664  attR    CCGGCGGGCCGCC  N/A  Click