Definition Lactobacillus rhamnosus Lc 705 chromosome, complete genome.
Accession NC_013199
Length 2,968,598
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 697923..697936  attL    CTTTTTATGAAGTG  N/A  Click
2 complement(698244..699395)  PROPHAGE_Oceano_HTE831: integrase; LC705_00679; phage(gi23097608)  5e-64  Click
3 complement(699455..700051)  PHAGE_Lactob_Lj771: cl repressor; LC705_00680; phage(gi163932156)  5e-07  Click
4 700158..700367  PHAGE_Staphy_vB_SepiS_phiIPLA7: repressor; LC705_00681; phage(gi399529150)  3e-05  Click
5 700379..700654  hypothetical protein; LC705_00682  N/A  Click
6 700734..701129  hypothetical protein; LC705_00683  N/A  Click
7 701080..701259  hypothetical protein; LC705_00684  N/A  Click
8 701240..701431  hypothetical protein; LC705_00685  N/A  Click
9 701479..701751  hypothetical protein; LC705_00686  N/A  Click
10 701748..701936  hypothetical protein; LC705_00687  N/A  Click
11 701911..702747  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; LC705_00688; phage(gi13095885)  1e-21  Click
12 702740..704164  PHAGE_Staphy_2638A: ORF003; LC705_00689; phage(gi66395453)  3e-66  Click
13 704444..704866  PHAGE_Strept_2: hypothetical protein SpyM3_0956; LC705_00690; phage(gi28876240)  7e-20  Click
14 704897..705322  PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; LC705_00691; phage(gi9635713)  9e-18  Click
15 705447..705917  PHAGE_Staphy_phiPV83: phi PVL ORF 1 homologue; LC705_00692; phage(gi9635714)  8e-19  Click
16 705914..707617  PHAGE_Lactob_LF1: bacteriophage terminase large subunit; LC705_00693; phage(gi418489385)  8e-121  Click
17 707583..707762  hypothetical protein; LC705_00694  N/A  Click
18 707767..708951  PHAGE_Entero_EFRM31: portal protein; LC705_00695; phage(gi327198113)  3e-51  Click
19 708938..710509  PHAGE_Entero_EFRM31: major capsid protein; LC705_00696; phage(gi327198115)  1e-45  Click
20 710568..710858  PHAGE_Entero_EFRM31: head-tail joining protein; LC705_00697; phage(gi327198117)  7e-06  Click
21 711028..711183  PHAGE_Lactob_Lrm1: head-tail joining protein; LC705_00698; phage(gi195661208)  2e-06  Click
22 718231..718244  attR    CTTTTTATGAAGTG  N/A  Click
Region 2, total : 57 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 843005..843019  attL    CTTACTCTCCGTTTT  N/A  Click
2 complement(843137..844264)  PHAGE_Lactob_Lrm1: integrase; LC705_00835; phage(gi195661224)  0.0  Click
3 complement(844372..844635)  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp40; LC705_00836; phage(gi195661240)  2e-12  Click
4 complement(844733..844990)  hypothetical protein; LC705_00837  N/A  Click
5 complement(845225..846406)  PHAGE_Cafete_BV_PW1: putative DNA N6-adenine methyltransferase; LC705_00838; phage(gi310831004)  6e-21  Click
6 complement(846497..846715)  PHAGE_Brocho_BL3: gp32; LC705_00839; phage(gi327409424)  3e-05  Click
7 complement(846787..847452)  PHAGE_Lactob_Lrm1: CI-like repressor; LC705_00840; phage(gi195661226)  1e-71  Click
8 847619..847861  PHAGE_Lactob_1: Cro-like repressor; LC705_00841; phage(gi219563223)  8e-15  Click
9 847885..848589  PHAGE_Lactob_Lrm1: antirepressor; LC705_00842; phage(gi195661228)  5e-117  Click
10 848590..848850  hypothetical protein; LC705_00843  N/A  Click
11 complement(848843..849148)  hypothetical protein; LC705_00844  N/A  Click
12 849223..849579  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp30; LC705_00845; phage(gi195661230)  2e-50  Click
13 849579..849707  hypothetical protein; LC705_00846  N/A  Click
14 849719..849937  hypothetical protein; LC705_00847  N/A  Click
15 849939..850109  hypothetical protein; LC705_00848  N/A  Click
16 850121..850996  PHAGE_Strept_1: hypothetical protein EJ-1p21; LC705_00849; phage(gi39653695)  1e-63  Click
17 850869..851780  PHAGE_Lactob_LF1: hypothetical protein; LC705_00850; phage(gi418489429)  1e-60  Click
18 851796..852752  PHAGE_Lister_A500: gp45; LC705_00851; phage(gi157325004)  5e-20  Click
19 852765..853250  PHAGE_Strept_phiNJ2: putative single-strand binding protein; LC705_00852; phage(gi414090245)  8e-43  Click
20 853559..853774  PHAGE_Entero_phiFL3A: transcriptional regulator; LC705_00853; phage(gi281416228)  1e-06  Click
21 853771..853962  PHAGE_Clostr_phiSM101: Helix-turn-helix domain protein; LC705_00854; phage(gi110804036)  7e-05  Click
22 854332..854781  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp40; LC705_00855; phage(gi195661240)  3e-54  Click
23 854828..855082  PHAGE_Lactob_Nu: hypothetical protein; LC705_00856; phage(gi78000011)  9e-40  Click
24 855505..855969  PHAGE_Lactob_phiAT3: putative endonuclease; LC705_00857; phage(gi48697295)  4e-31  Click
25 856351..856761  PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF37; LC705_00858; phage(gi48697297)  1e-63  Click
26 856758..857198  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp44; LC705_00859; phage(gi195661244)  1e-22  Click
27 857185..857403  hypothetical protein; LC705_00860  N/A  Click
28 857393..857725  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp47; LC705_00861; phage(gi195661247)  2e-21  Click
29 857722..857961  hypothetical protein; LC705_00862  N/A  Click
30 857958..858350  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp48; LC705_00863; phage(gi195661248)  2e-68  Click
31 complement(859051..859611)  hypothetical protein; LC705_00864  N/A  Click
32 859470..859531  tRNA  N/A  Click
33 859676..860341  hypothetical protein; LC705_00865  N/A  Click
34 860984..862201  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp50; LC705_00866; phage(gi195661250)  1e-54  Click
35 862188..862718  PHAGE_Lactob_Lrm1: endonuclease; LC705_00867; phage(gi195661251)  2e-57  Click
36 862821..863144  PHAGE_Lactob_A2: hypothetical protein A2p61; LC705_00868; phage(gi22296580)  2e-51  Click
37 863162..863326  PHAGE_Lactob_Nu: hypothetical protein; LC705_00869; phage(gi78000022)  3e-18  Click
38 863363..864157  PHAGE_Lactob_Lrm1: small terminase subunit; LC705_00870; phage(gi195661254)  1e-149  Click
39 864358..864813  PHAGE_Lactob_Lrm1: terminase subunit; LC705_00871; phage(gi195661201)  2e-81  Click
40 864835..866547  PHAGE_Lactob_Lrm1: large terminase subunit; LC705_00872; phage(gi195661202)  0.0  Click
41 866559..866750  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp03; LC705_00873; phage(gi195661203)  1e-21  Click
42 866756..868009  PHAGE_Lactob_Lrm1: portal protein; LC705_00874; phage(gi195661204)  0.0  Click
43 867963..868592  PHAGE_Lactob_Lrm1: head maturation protease; LC705_00875; phage(gi195661205)  2e-118  Click
44 868634..869836  PHAGE_Lactob_Lrm1: major head protein; LC705_00876; phage(gi195661206)  0.0  Click
45 869854..870093  PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; LC705_00877; phage(gi326536940)  5e-07  Click
46 870104..870463  PHAGE_Lactob_Lrm1: DNA packaging protein; LC705_00878; phage(gi195661207)  2e-45  Click
47 870342..870782  PHAGE_Lactob_Lrm1: head-tail joining protein; LC705_00879; phage(gi195661208)  5e-80  Click
48 870782..871168  PHAGE_Lactob_Lrm1: head-tail joining protein; LC705_00880; phage(gi195661209)  3e-69  Click
49 871168..871554  PHAGE_Lactob_Lrm1: head-tail joining protein; LC705_00881; phage(gi195661210)  1e-69  Click
50 871588..872205  PHAGE_Lactob_Lrm1: major tail protein; LC705_00882; phage(gi195661211)  3e-106  Click
51 872305..872718  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp12; LC705_00883; phage(gi195661212)  3e-74  Click
52 872841..877706  PHAGE_Lactob_Lrm1: tape measure protein; LC705_00884; phage(gi195661213)  0.0  Click
53 877707..879629  PHAGE_Lactob_Lrm1: tail component; LC705_00885; phage(gi195661214)  0.0  Click
54 879629..882130  PHAGE_Lactob_Lrm1: host specificity protein; LC705_00886; phage(gi195661215)  0.0  Click
55 882127..882414  PHAGE_Lactob_1: hypothetical protein lb338_phage_123; LC705_00887; phage(gi226377753)  7e-16  Click
56 882395..882538  hypothetical protein; LC705_00888  N/A  Click
57 882568..882861  PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp17; LC705_00889; phage(gi195661217)  1e-47  Click
58 882851..883264  PHAGE_Lactob_A2: holin; LC705_00890; phage(gi22296539)  1e-62  Click
59 883275..884459  PHAGE_Lactob_Lrm1: lysin; LC705_00891; phage(gi195661219)  1e-91  Click
60 884678..884692  attR    CTTACTCTCCGTTTT  N/A  Click
Region 3, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1052170..1052182  attL    TGGAGGTGAGGAG  N/A  Click
2 complement(1052252..1053400)  PHAGE_Lactob_Lj928: putative integrase; LC705_01060; phage(gi41179288)  5e-33  Click
3 complement(1053494..1054147)  phage-related transcriptional regulator; LC705_01061  N/A  Click
4 1054276..1054554  hypothetical protein; LC705_01062  N/A  Click
5 1054622..1055017  hypothetical protein; LC705_01063  N/A  Click
6 1054968..1055147  hypothetical protein; LC705_01064  N/A  Click
7 1055128..1055319  hypothetical protein; LC705_01065  N/A  Click
8 1055367..1055636  hypothetical protein; LC705_01066  N/A  Click
9 1055617..1056447  PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; LC705_01067; phage(gi13095885)  2e-23  Click
10 1056440..1057864  PHAGE_Staphy_3A: ORF002; LC705_01068; phage(gi66395590)  1e-65  Click
11 1058139..1058480  hypothetical protein; LC705_01069  N/A  Click
12 1058518..1058937  PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; LC705_01070; phage(gi9635713)  7e-18  Click
13 1059062..1059532  PHAGE_Staphy_phiPV83: phi PVL ORF 1 homologue; LC705_01071; phage(gi9635714)  8e-19  Click
14 1059529..1061232  PHAGE_Lactob_LF1: bacteriophage terminase large subunit; LC705_01072; phage(gi418489385)  2e-121  Click
15 1061198..1061377  hypothetical protein; LC705_01073  N/A  Click
16 1061382..1062566  PHAGE_Entero_EFRM31: portal protein; LC705_01074; phage(gi327198113)  5e-51  Click
17 1062553..1064079  PHAGE_Entero_EFRM31: major capsid protein; LC705_01075; phage(gi327198115)  1e-43  Click
18 1064135..1064425  PHAGE_Entero_EFRM31: head-tail joining protein; LC705_01076; phage(gi327198117)  4e-06  Click
19 1064595..1064750  PHAGE_Lactob_Lrm1: head-tail joining protein; LC705_01077; phage(gi195661208)  1e-05  Click
20 1066594..1066606  attR    TGGAGGTGAGGAG  N/A  Click