| Definition | Lactobacillus rhamnosus GG, complete genome. |
|---|---|
| Accession | NC_013198 |
| Length | 3,010,111 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 61 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1102419..1102456 | attL TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT | N/A | Click |
| 2 | complement(1102527..1103711) | PROPHAGE_Oceano_HTE831: integrase; LGG_01086; phage(gi23097608) | 3e-34 | Click |
| 3 | 1103882..1104088 | hypothetical protein; LGG_01087 | N/A | Click |
| 4 | complement(1104056..1105057) | hypothetical protein; LGG_01088 | N/A | Click |
| 5 | complement(1105168..1105371) | hypothetical protein; LGG_01089 | N/A | Click |
| 6 | complement(1105395..1105820) | hypothetical protein; LGG_01090 | N/A | Click |
| 7 | 1106203..1106424 | hypothetical protein; LGG_01091 | N/A | Click |
| 8 | complement(1106425..1107180) | hypothetical protein; LGG_01092 | N/A | Click |
| 9 | complement(1107287..1107988) | PHAGE_Lactob_Lj771: hypothetical protein LJ771_002; LGG_01093; phage(gi163932154) | 1e-30 | Click |
| 10 | complement(1108048..1108467) | PHAGE_Lactob_LF1: Lj965 prophage repressor-like protein; LGG_01094; phage(gi418489418) | 2e-16 | Click |
| 11 | complement(1108460..1108798) | PHAGE_Clostr_CD119: RepR; putative repressor; LGG_01095; phage(gi90592681) | 5e-16 | Click |
| 12 | 1108933..1109175 | PHAGE_Geobac_GBSV1: repressor protein; LGG_01096; phage(gi115334659) | 1e-09 | Click |
| 13 | complement(1109417..1109644) | hypothetical protein; LGG_01097 | N/A | Click |
| 14 | 1109732..1109890 | hypothetical protein; LGG_01098 | N/A | Click |
| 15 | 1109956..1110504 | hypothetical protein; LGG_01099 | N/A | Click |
| 16 | 1110483..1110713 | hypothetical protein; LGG_01100 | N/A | Click |
| 17 | 1110717..1110845 | hypothetical protein; LGG_01101 | N/A | Click |
| 18 | 1110857..1111084 | hypothetical protein; LGG_01102 | N/A | Click |
| 19 | 1111077..1111247 | PHAGE_Lactob_Nu: hypothetical protein; LGG_01103; phage(gi78000001) | 1e-13 | Click |
| 20 | 1111291..1112166 | PHAGE_Strept_1: hypothetical protein EJ-1p21; LGG_01104; phage(gi39653695) | 3e-63 | Click |
| 21 | 1112186..1112950 | PHAGE_Strept_3: hypothetical protein SpyM3_1132; LGG_01105; phage(gi28876302) | 1e-56 | Click |
| 22 | 1112966..1113922 | PHAGE_Lister_A118: gp49; LGG_01106; phage(gi16798836) | 3e-20 | Click |
| 23 | 1113935..1114420 | PHAGE_Strept_5093: single-stranded DNA binding protein; LGG_01107; phage(gi238801886) | 8e-43 | Click |
| 24 | 1114438..1114653 | PHAGE_Lactob_Lj928: hypothetical protein Ljo_1453; LGG_01108; phage(gi41179300) | 4e-08 | Click |
| 25 | 1114650..1114841 | PHAGE_Clostr_phiSM101: Helix-turn-helix domain protein; LGG_01109; phage(gi110804036) | 7e-05 | Click |
| 26 | 1115211..1115660 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp40; LGG_01110; phage(gi195661240) | 8e-73 | Click |
| 27 | 1115707..1115961 | PHAGE_Lactob_Nu: hypothetical protein; LGG_01111; phage(gi78000011) | 2e-36 | Click |
| 28 | 1116018..1116359 | PHAGE_Lactob_Nu: putative Holliday junction resolvase; LGG_01112; phage(gi78000012) | 8e-44 | Click |
| 29 | 1116372..1116836 | PHAGE_Lactob_phiAT3: putative endonuclease; LGG_01113; phage(gi48697295) | 1e-31 | Click |
| 30 | 1116848..1117033 | PHAGE_Lactob_phiAT3: hypothetical protein phiAT3gORF36; LGG_01114; phage(gi48697296) | 3e-27 | Click |
| 31 | 1117030..1117536 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp44; LGG_01115; phage(gi195661244) | 2e-31 | Click |
| 32 | 1117526..1117705 | hypothetical protein; LGG_01116 | N/A | Click |
| 33 | 1118313..1118675 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp47; LGG_01117; phage(gi195661247) | 1e-18 | Click |
| 34 | 1118672..1118911 | hypothetical protein; LGG_01118 | N/A | Click |
| 35 | 1118990..1119220 | hypothetical protein; LGG_01119 | N/A | Click |
| 36 | 1119435..1119866 | hypothetical protein; LGG_01120 | N/A | Click |
| 37 | 1120894..1122042 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp50; LGG_01121; phage(gi195661250) | 0.0 | Click |
| 38 | 1122055..1122597 | PHAGE_Lactob_Lrm1: endonuclease; LGG_01122; phage(gi195661251) | 5e-109 | Click |
| 39 | 1122590..1122910 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp52; LGG_01123; phage(gi195661252) | 6e-49 | Click |
| 40 | 1122947..1123480 | PHAGE_Lactob_phig1e: putative terminase small subunit; LGG_01124; phage(gi23455798) | 8e-37 | Click |
| 41 | 1123452..1124813 | PHAGE_Lactob_H: putative terminase large subunit; LGG_01125; phage(gi148750837) | 2e-151 | Click |
| 42 | 1124818..1126245 | PHAGE_Lactoc_ul36: putative portal protein; LGG_01126; phage(gi21716109) | 3e-85 | Click |
| 43 | 1126211..1127203 | PHAGE_Lactob_Lj928: hypothetical protein Ljo_1437; LGG_01127; phage(gi41179316) | 7e-51 | Click |
| 44 | 1127328..1127984 | PHAGE_Staphy_StB27: scaffold protein; LGG_01128; phage(gi431809709) | 1e-21 | Click |
| 45 | 1128000..1129013 | PHAGE_Lactob_phig1e: minor capsid protein; LGG_01129; phage(gi23455804) | 1e-52 | Click |
| 46 | 1129241..1129615 | PHAGE_Lactob_Lj928: hypothetical protein Ljo_1432; LGG_01130; phage(gi41179321) | 2e-15 | Click |
| 47 | 1129620..1129922 | PHAGE_Lactoc_ul36: hypothetical protein ul36_45; LGG_01131; phage(gi21716116) | 4e-07 | Click |
| 48 | 1129919..1130284 | PHAGE_Lactoc_Tuc2009: hypothetical protein Tuc2009_41; LGG_01132; phage(gi13487842) | 1e-14 | Click |
| 49 | 1130285..1130689 | PHAGE_Strept_858: orf15; LGG_01133; phage(gi168229288) | 2e-14 | Click |
| 50 | 1130701..1131303 | PHAGE_Lactoc_ul36: major tail protein; LGG_01134; phage(gi21716118) | 2e-13 | Click |
| 51 | 1131390..1131722 | PHAGE_Entero_phiEf11: putative phage protein; LGG_01135; phage(gi282598743) | 2e-21 | Click |
| 52 | 1131827..1132180 | PHAGE_Lactoc_ul36: hypothetical protein ul36_49; LGG_01136; phage(gi21716120) | 3e-10 | Click |
| 53 | 1132173..1135262 | PHAGE_Entero_phiFL1A: PblA-like tail protein; LGG_01137; phage(gi281416377) | 5e-89 | Click |
| 54 | 1135265..1137253 | PHAGE_Lactob_Lrm1: tail component; LGG_01138; phage(gi195661214) | 0.0 | Click |
| 55 | 1137253..1139760 | PHAGE_Lactob_Lrm1: host specificity protein; LGG_01139; phage(gi195661215) | 0.0 | Click |
| 56 | 1139770..1140093 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp16; LGG_01140; phage(gi195661216) | 6e-55 | Click |
| 57 | 1140229..1140540 | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp17; LGG_01141; phage(gi195661217) | 3e-47 | Click |
| 58 | 1140530..1140943 | PHAGE_Lactob_A2: holin; LGG_01142; phage(gi22296539) | 5e-62 | Click |
| 59 | 1140954..1142252 | PHAGE_Lactob_Lrm1: lysin; LGG_01143; phage(gi195661219) | 0.0 | Click |
| 60 | 1142543..1142580 | attR TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT | N/A | Click |
| 61 | complement(1142872..1143159) | antibiotic biosynthesis monooxygenase; LGG_01144 | N/A | Click |
| 62 | complement(1143455..1144306) | PHAGE_Strept_3: putative mitogenic factor; LGG_01145; phage(gi28876265) | 3e-13 | Click |
| 63 | complement(1144306..1145049) | PHAGE_Entero_HK629: tail fiber protein; LGG_01146; phage(gi428782034) | 5e-08 | Click |
Region 2, total : 27 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1528402..1528481 | attL CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC | N/A | Click |
| 2 | complement(1528627..1529796) | PROPHAGE_Oceano_HTE831: integrase; LGG_01515; phage(gi23097608) | 3e-47 | Click |
| 3 | complement(1529839..1530159) | XRE family transcriptional regulator; LGG_01516 | N/A | Click |
| 4 | 1530299..1530454 | hypothetical protein; LGG_01517 | N/A | Click |
| 5 | complement(1531001..1531387) | hypothetical protein; LGG_01518 | N/A | Click |
| 6 | complement(1531578..1532732) | PHAGE_Lactob_Nu: putative lysin; LGG_01519; phage(gi78000035) | 6e-86 | Click |
| 7 | complement(1532735..1533067) | PHAGE_Lactob_Nu: putative holin; LGG_01520; phage(gi78000034) | 5e-35 | Click |
| 8 | complement(1533080..1533313) | PHAGE_Lactob_Sha1: phage-related holin; LGG_01521; phage(gi418489822) | 3e-06 | Click |
| 9 | complement(1533462..1533785) | PHAGE_Lactob_Lrm1: hypothetical protein Lrm1_gp16; LGG_01522; phage(gi195661216) | 3e-55 | Click |
| 10 | complement(1533795..1536728) | PHAGE_Lactob_Nu: putative host specificity protein; LGG_01523; phage(gi77999995) | 0.0 | Click |
| 11 | complement(1536734..1538791) | PHAGE_Lactob_Nu: putative tail component; LGG_01524; phage(gi78000032) | 5e-104 | Click |
| 12 | complement(1538792..1542958) | PHAGE_Lactob_Nu: putative tape measure protein; LGG_01525; phage(gi78000025) | 0.0 | Click |
| 13 | complement(1542964..1543101) | hypothetical protein; LGG_01526 | N/A | Click |
| 14 | complement(1543172..1543522) | PHAGE_Lactob_Nu: putative tail component; LGG_01527; phage(gi78000031) | 1e-56 | Click |
| 15 | complement(1543677..1544312) | PHAGE_Lactob_Nu: major tail protein; LGG_01528; phage(gi78000030) | 2e-98 | Click |
| 16 | complement(1544313..1544693) | PHAGE_Lactob_Nu: putative tail component; LGG_01529; phage(gi77999994) | 6e-59 | Click |
| 17 | complement(1544690..1545109) | PHAGE_Lactob_Nu: putative head-tail joining protein; LGG_01530; phage(gi77999993) | 7e-62 | Click |
| 18 | complement(1545112..1545294) | PHAGE_Lactob_Nu: putative head-tail joining protein; LGG_01531; phage(gi77999992) | 3e-25 | Click |
| 19 | complement(1545446..1545736) | hypothetical protein; LGG_01532 | N/A | Click |
| 20 | complement(1545808..1547736) | PHAGE_Lactob_1: protease-scaffold-major head protein; LGG_01533; phage(gi219563201) | 7e-70 | Click |
| 21 | complement(1547736..1548836) | PHAGE_Lactoc_bIL309: portal protein; LGG_01534; phage(gi13095846) | 5e-82 | Click |
| 22 | complement(1549139..1551010) | PHAGE_Lactob_1: terminase large subunit; LGG_01535; phage(gi219563199) | 6e-162 | Click |
| 23 | complement(1551025..1551489) | PHAGE_Lactob_1: terminase small subunit; LGG_01536; phage(gi219563198) | 8e-27 | Click |
| 24 | complement(1551971..1552531) | PHAGE_Clostr_phiCD38_2: recombinase/resolvase; LGG_01537; phage(gi333798162) | 5e-38 | Click |
| 25 | 1552937..1553686 | PHAGE_Parame_1: hypothetical protein; LGG_01538; phage(gi9632040) | 2e-05 | Click |
| 26 | 1553833..1555248 | PROPHAGE_Xantho_33913: IS1478 transposase; LGG_01539; phage(gi77747808) | 7e-19 | Click |
| 27 | complement(1556176..1556616) | PHAGE_Lactob_Nu: putative HNH nuclease; LGG_01540; phage(gi78000023) | 5e-12 | Click |
| 28 | complement(1556715..1557119) | PHAGE_Lactob_AQ113: single-strand DNA binding protein; LGG_01541; phage(gi446730277) | 1e-17 | Click |
| 29 | 1563014..1563093 | attR CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC | N/A | Click |
Region 3, total : 8 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2086239..2088389) | PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; LGG_02035; phage(gi15800640) | 4e-129 | Click |
| 2 | complement(2088780..2089544) | capsular polysaccharide biosynthesis protein; LGG_02036 | N/A | Click |
| 3 | 2089701..2090594 | cell envelope-related transcriptional attenuator; LGG_02037 | N/A | Click |
| 4 | complement(2090693..2091718) | PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; LGG_02038; phage(gi448260373) | 5e-69 | Click |
| 5 | complement(2091721..2092293) | PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; LGG_02039; phage(gi448260371) | 1e-34 | Click |
| 6 | complement(2092307..2092876) | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; LGG_02040; phage(gi448260372) | 6e-55 | Click |
| 7 | complement(2092968..2094383) | PROPHAGE_Xantho_33913: IS1478 transposase; LGG_02041; phage(gi77747808) | 7e-19 | Click |
| 8 | complement(2094530..2094760) | PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; LGG_02042; phage(gi448260372) | 1e-24 | Click |
Region 4, total : 10 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2225501..2227033) | PHAGE_Iodoba_phiPLPE: gp77 putative tail-fiber protein; LGG_02157; phage(gi197085691) | 4e-13 | Click |
| 2 | complement(2227017..2227430) | hypothetical protein; LGG_02158 | N/A | Click |
| 3 | complement(2227659..2228261) | membrane spanning protein; LGG_02159 | N/A | Click |
| 4 | complement(2228309..2228806) | PROPHAGE_Xantho_33913: IS1480 transposase; LGG_02160; phage(gi21231089) | 6e-42 | Click |
| 5 | complement(2228776..2229003) | PROPHAGE_Shewan_MR-1: ISSod6, transposase; LGG_02161; phage(gi24374783) | 2e-07 | Click |
| 6 | complement(2229152..2229577) | hypothetical protein; LGG_02162 | N/A | Click |
| 7 | complement(2229591..2230583) | PHAGE_Parame_1: hypothetical protein; LGG_02163; phage(gi9631622) | 2e-45 | Click |
| 8 | complement(2230632..2231795) | aspartate/tyrosine/aromatic aminotransferase; LGG_02164 | N/A | Click |
| 9 | 2232199..2232426 | PROPHAGE_Shewan_MR-1: ISSod6, transposase; LGG_02165; phage(gi24374783) | 2e-07 | Click |
| 10 | 2232396..2232893 | PROPHAGE_Xantho_33913: IS1480 transposase; LGG_02166; phage(gi21231089) | 6e-42 | Click |
Region 5, total : 25 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2948929..2948943 | attL TGGGTGGTCAGGGGA | N/A | Click |
| 2 | complement(2949041..2950198) | PROPHAGE_Oceano_HTE831: integrase; LGG_02885; phage(gi23097608) | 4e-56 | Click |
| 3 | complement(2950316..2950927) | PHAGE_Lactoc_bIL311: repressor; LGG_02886; phage(gi13095660) | 2e-12 | Click |
| 4 | 2951279..2951554 | hypothetical protein; LGG_02887 | N/A | Click |
| 5 | 2951622..2951843 | hypothetical protein; LGG_02888 | N/A | Click |
| 6 | 2951815..2951970 | hypothetical protein; LGG_02889 | N/A | Click |
| 7 | 2951954..2952145 | hypothetical protein; LGG_02890 | N/A | Click |
| 8 | 2952190..2952462 | hypothetical protein; LGG_02891 | N/A | Click |
| 9 | 2952459..2952647 | hypothetical protein; LGG_02892 | N/A | Click |
| 10 | 2952631..2953458 | PHAGE_Lactoc_bIL310: hypothetical protein bIL310p24; LGG_02893; phage(gi13095885) | 2e-22 | Click |
| 11 | 2953451..2954875 | PHAGE_Staphy_2638A: ORF003; LGG_02894; phage(gi66395453) | 2e-66 | Click |
| 12 | 2955155..2955577 | PHAGE_Strept_2: hypothetical protein SpyM3_0956; LGG_02895; phage(gi28876240) | 9e-20 | Click |
| 13 | 2955608..2956033 | PHAGE_Staphy_phiPV83: phi PVL ORF 63 homologue; LGG_02896; phage(gi9635713) | 9e-18 | Click |
| 14 | 2956158..2956628 | PHAGE_Staphy_phiPV83: phi PVL ORF 1 homologue; LGG_02897; phage(gi9635714) | 2e-18 | Click |
| 15 | 2956625..2958328 | PHAGE_Lactob_LF1: bacteriophage terminase large subunit; LGG_02898; phage(gi418489385) | 4e-122 | Click |
| 16 | 2958294..2958473 | phage-related conserved protein; LGG_02899 | N/A | Click |
| 17 | 2958478..2959662 | PHAGE_Entero_1: portal protein; LGG_02900; phage(gi225626395) | 8e-52 | Click |
| 18 | 2959649..2961208 | PHAGE_Entero_1: major capsid protein; LGG_02901; phage(gi225626393) | 1e-42 | Click |
| 19 | 2961270..2961560 | PHAGE_Entero_1: head-tail joining protein; LGG_02902; phage(gi225626391) | 4e-09 | Click |
| 20 | 2961730..2961885 | PHAGE_Lactob_Lrm1: head-tail joining protein; LGG_02903; phage(gi195661208) | 2e-06 | Click |
| 21 | complement(2962404..2962544) | extracellular protein; LGG_02904 | N/A | Click |
| 22 | complement(2962560..2962808) | transglycosylase-associated protein; LGG_02905 | N/A | Click |
| 23 | complement(2963058..2963130) | tRNA | N/A | Click |
| 24 | 2963058..2963072 | attR TGGGTGGTCAGGGGA | N/A | Click |
| 25 | complement(2963336..2964256) | PHAGE_Cronob_vB_CsaP_GAP52: putative ribose-phosphate pyrophosphokinase; LGG_02906; phage(gi414087562) | 1e-20 | Click |
| 26 | 2964457..2965386 | alpha/beta superfamily hydrolase; LGG_02907 | N/A | Click |
| 27 | complement(2965554..2966507) | PHAGE_Mycoba_Omega: gp105; LGG_02908; phage(gi29566839) | 1e-06 | Click |
| 28 | complement(2966629..2967783) | PHAGE_Microm_MpV1: hypothetical protein; LGG_02909; phage(gi313768442) | 1e-11 | Click |