Definition Jonesia denitrificans DSM 20603 chromosome, complete genome.
Accession NC_013174
Length 2,749,646
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 45 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2324653..2324664  attL    AAGGTTTTTGGG  N/A  Click
2 2324963..2326150  PHAGE_Mycoba_Che9d: gp50; Jden_2126; phage(gi29566457)  1e-53  Click
3 complement(2326197..2326688)  hypothetical protein; Jden_2127  N/A  Click
4 complement(2326685..2327065)  hypothetical protein; Jden_2128  N/A  Click
5 complement(2327074..2327502)  hypothetical protein; Jden_2129  N/A  Click
6 2327636..2327866  hypothetical protein; Jden_2130  N/A  Click
7 2327945..2328211  hypothetical protein; Jden_2131  N/A  Click
8 2328208..2328384  hypothetical protein; Jden_2132  N/A  Click
9 2328491..2329225  PHAGE_Lactob_Lj928: putative antirepressor; Jden_2133; phage(gi41179298)  6e-62  Click
10 2329222..2329413  hypothetical protein; Jden_2134  N/A  Click
11 2329423..2329518  hypothetical protein; Jden_2135  N/A  Click
12 2329515..2330573  PHAGE_Cafete_BV_PW1: hypothetical protein; Jden_2136; phage(gi310831380)  1e-35  Click
13 2330570..2330701  hypothetical protein; Jden_2137  N/A  Click
14 2330698..2330856  hypothetical protein; Jden_2138  N/A  Click
15 2330843..2330944  hypothetical protein; Jden_2139  N/A  Click
16 2330941..2331225  hypothetical protein; Jden_2140  N/A  Click
17 2331215..2331892  PHAGE_Rhodoc_REQ2: exonuclease; Jden_2141; phage(gi372449878)  4e-60  Click
18 2331892..2332425  PHAGE_Rhodoc_REQ2: hypothetical protein; Jden_2142; phage(gi372449879)  7e-34  Click
19 2332422..2332634  hypothetical protein; Jden_2143  N/A  Click
20 2332609..2332743  hypothetical protein; Jden_2144  N/A  Click
21 2332740..2332991  PHAGE_Mycoba_Porky: gp37; Jden_2145; phage(gi194303333)  5e-12  Click
22 2332993..2333406  PHAGE_Rhodoc_REQ3: single stranded DNA binding protein; Jden_2146; phage(gi372449997)  1e-11  Click
23 2333524..2333877  hypothetical protein; Jden_2147  N/A  Click
24 2333874..2334338  PHAGE_Mycoba_Pipefish: gp58; Jden_2148; phage(gi109521898)  8e-26  Click
25 2334328..2334723  PHAGE_Strept_phiNJ2: putative endodeoxyribonuclease RusA; Jden_2149; phage(gi414090233)  7e-13  Click
26 2334842..2335027  hypothetical protein; Jden_2150  N/A  Click
27 2335024..2335389  PHAGE_Mycoba_TM4: hypothetical protein TM4_gp49; Jden_2151; phage(gi18496934)  2e-07  Click
28 2335386..2335637  hypothetical protein; Jden_2152  N/A  Click
29 2335627..2336583  PHAGE_Mycoba_Llij: gp69; Jden_2153; phage(gi109392255)  4e-32  Click
30 2336580..2336939  hypothetical protein; Jden_2154  N/A  Click
31 2336936..2338219  PHAGE_Burkho_KS9: helicase gp45; Jden_2155; phage(gi255033728)  1e-46  Click
32 2338216..2338419  hypothetical protein; Jden_2156  N/A  Click
33 2338565..2338837  hypothetical protein; Jden_2157  N/A  Click
34 2338834..2339115  hypothetical protein; Jden_2158  N/A  Click
35 2339112..2339492  PHAGE_Mycoba_Brujita: gp60; Jden_2159; phage(gi206599604)  3e-23  Click
36 2339698..2340252  hypothetical protein; Jden_2160  N/A  Click
37 2340565..2340867  PHAGE_Strept_R4: putative HNH endonuclease; Jden_2161; phage(gi414089986)  1e-13  Click
38 2340947..2341699  PHAGE_Mycoba_Llij: gp100; Jden_2162; phage(gi109392286)  1e-15  Click
39 2341943..2342512  PHAGE_Strept_VWB: hypothetical protein VWBp30; Jden_2163; phage(gi41057246)  8e-36  Click
40 2342561..2342929  PHAGE_Mycoba_Faith1: gp2; Jden_2164; phage(gi338827014)  4e-09  Click
41 2342913..2344694  PHAGE_Strept_R4: putative terminase; Jden_2165; phage(gi414089990)  9e-125  Click
42 2344691..2346025  PHAGE_Strept_R4: putative portal; Jden_2166; phage(gi414089991)  3e-54  Click
43 2346025..2346795  PHAGE_Propio_PAS50: Gp4; Jden_2167; phage(gi330858355)  8e-22  Click
44 2346872..2347399  PHAGE_Rhodoc_REQ3: hypothetical protein; Jden_2168; phage(gi372450009)  8e-05  Click
45 2347402..2348364  PHAGE_Mycoba_TM4: major capsid subunit gp9; Jden_2169; phage(gi18496895)  8e-41  Click
46 2348387..2348812  PHAGE_Strept_R4: hypothetical protein; Jden_2170; phage(gi414089995)  6e-05  Click
47 2350883..2350894  attR    AAGGTTTTTGGG  N/A  Click
Region 2, total : 37 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2457994..2458980)  PHAGE_Acanth_moumouvirus: NAD-dependent epimerase/dehydratase; Jden_2268; phage(gi441432391)  6e-29  Click
2 complement(2459063..2459401)  hypothetical protein; Jden_2269  N/A  Click
3 2459519..2459591  tRNA  N/A  Click
4 2459633..2459706  tRNA  N/A  Click
5 2459751..2459824  tRNA  N/A  Click
6 2459846..2459921  tRNA  N/A  Click
7 complement(2460115..2460480)  hypothetical protein; Jden_2270  N/A  Click
8 complement(2460491..2460916)  PHAGE_Lactob_Lj965: putative repressor; Jden_2271; phage(gi41179224)  4e-05  Click
9 2461048..2461254  transcriptional regulator, XRE family; Jden_2272  N/A  Click
10 2461339..2461605  hypothetical protein; Jden_2273  N/A  Click
11 2461602..2461778  hypothetical protein; Jden_2274  N/A  Click
12 2461885..2462655  PHAGE_Lactob_Lrm1: antirepressor; Jden_2275; phage(gi195661228)  3e-19  Click
13 2462652..2462855  hypothetical protein; Jden_2276  N/A  Click
14 2462865..2462960  hypothetical protein; Jden_2277  N/A  Click
15 2462957..2463976  PHAGE_Cafete_BV_PW1: hypothetical protein; Jden_2278; phage(gi310831380)  6e-24  Click
16 2463973..2464107  hypothetical protein; Jden_2279  N/A  Click
17 2464202..2464483  hypothetical protein; Jden_2280  N/A  Click
18 2464476..2465324  PHAGE_Mycoba_Che9c: gp60; Jden_2281; phage(gi29566166)  2e-25  Click
19 2465317..2465958  PHAGE_Rhodoc_REQ3: Rect-like protein; Jden_2282; phage(gi372449982)  3e-41  Click
20 2465955..2466167  hypothetical protein; Jden_2283  N/A  Click
21 2466142..2466276  hypothetical protein; Jden_2284  N/A  Click
22 2466273..2466524  PHAGE_Mycoba_Porky: gp37; Jden_2285; phage(gi194303333)  5e-12  Click
23 2466526..2466939  PHAGE_Rhodoc_REQ3: single stranded DNA binding protein; Jden_2286; phage(gi372449997)  1e-11  Click
24 2467057..2467410  hypothetical protein; Jden_2287  N/A  Click
25 2467407..2467871  PHAGE_Mycoba_Pipefish: gp58; Jden_2288; phage(gi109521898)  8e-26  Click
26 2467861..2468256  PHAGE_Strept_phiNJ2: putative endodeoxyribonuclease RusA; Jden_2289; phage(gi414090233)  7e-13  Click
27 2468375..2468560  hypothetical protein; Jden_2290  N/A  Click
28 2468557..2468922  PHAGE_Mycoba_TM4: hypothetical protein TM4_gp49; Jden_2291; phage(gi18496934)  2e-07  Click
29 2468919..2469170  hypothetical protein; Jden_2292  N/A  Click
30 2469160..2470116  PHAGE_Mycoba_Llij: gp69; Jden_2293; phage(gi109392255)  4e-32  Click
31 2470113..2470472  hypothetical protein; Jden_2294  N/A  Click
32 2470469..2471752  PHAGE_Burkho_KS9: helicase gp45; Jden_2295; phage(gi255033728)  1e-46  Click
33 2471749..2471952  hypothetical protein; Jden_2296  N/A  Click
34 2472098..2472370  hypothetical protein; Jden_2297  N/A  Click
35 2472367..2472648  hypothetical protein; Jden_2298  N/A  Click
36 2472645..2473025  PHAGE_Mycoba_Brujita: gp60; Jden_2299; phage(gi206599604)  3e-23  Click
37 2473022..2473186  hypothetical protein; Jden_2300  N/A  Click
38 2473183..2473386  hypothetical protein; Jden_2301  N/A  Click
39 2473438..2473965  hypothetical protein; Jden_2302  N/A  Click
40 2473962..2474144  hypothetical protein; Jden_2303  N/A  Click
41 2474430..2474747  PHAGE_Propio_P1.1: HNH endonuclease; Jden_2304; phage(gi410491407)  6e-18  Click
Region 3, total : 29 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2468548..2468560  attL    AGGACTCTCATGA  N/A  Click
2 2475125..2476549  PHAGE_Propio_P104A: putative terminase large subunit; Jden_2306; phage(gi410491552)  1e-111  Click
3 2476546..2477967  PHAGE_Mycoba_BPs: portal protein; Jden_2307; phage(gi189043090)  3e-45  Click
4 2477951..2478700  PHAGE_Mycoba_Che9d: gp5; Jden_2308; phage(gi29566412)  3e-17  Click
5 2478796..2479230  PHAGE_Propio_P104A: putative head assembly scaffold; Jden_2309; phage(gi410491555)  2e-11  Click
6 2479242..2480141  PHAGE_Mycoba_BPs: capsid protein; Jden_2310; phage(gi189043094)  1e-51  Click
7 2480141..2480320  hypothetical protein; Jden_2311  N/A  Click
8 2480334..2480741  hypothetical protein; Jden_2312  N/A  Click
9 2480743..2481078  hypothetical protein; Jden_2313  N/A  Click
10 2481071..2481346  hypothetical protein; Jden_2314  N/A  Click
11 2481339..2481686  PHAGE_Strept_SM1: gp45; Jden_2315; phage(gi32469476)  3e-06  Click
12 2481748..2482305  PHAGE_Gordon_GTE2: main tail protein; Jden_2316; phage(gi338826868)  7e-21  Click
13 2482410..2482691  hypothetical protein; Jden_2317  N/A  Click
14 2482796..2483080  PHAGE_Mycoba_BPs: potential virion protein; Jden_2318; phage(gi189043102)  4e-08  Click
15 complement(2483134..2483610)  hypothetical protein; Jden_2319  N/A  Click
16 2483652..2486030  PHAGE_Microb_Min1: probable tape-measure protein; Jden_2320; phage(gi149882831)  1e-63  Click
17 2486048..2488153  PHAGE_Bacill_Andromeda: hypothetical protein; Jden_2321; phage(gi460042038)  1e-14  Click
18 2488158..2490806  hypothetical protein; Jden_2322  N/A  Click
19 2490849..2491652  hypothetical protein; Jden_2323  N/A  Click
20 2491645..2492685  PHAGE_Bacill_PBC1: hypothetical protein; Jden_2324; phage(gi389060341)  2e-21  Click
21 2492686..2493294  hypothetical protein; Jden_2325  N/A  Click
22 2493317..2493703  hypothetical protein; Jden_2326  N/A  Click
23 2493700..2493984  hypothetical protein; Jden_2327  N/A  Click
24 2494034..2494867  PHAGE_Rhodoc_RRH1: putative lysin; Jden_2328; phage(gi372449805)  3e-13  Click
25 2494879..2495094  PHAGE_Lactoc_r1t: Holin; Jden_2329; phage(gi23455767)  1e-05  Click
26 2495081..2495317  hypothetical protein; Jden_2330  N/A  Click
27 2495304..2496452  PHAGE_Propio_P104A: hypothetical protein; Jden_2331; phage(gi410491576)  1e-08  Click
28 complement(2496622..2497029)  hypothetical protein; Jden_2332  N/A  Click
29 complement(2497085..2497330)  hypothetical protein; Jden_2333  N/A  Click
30 complement(2497496..2498830)  PHAGE_Mycoba_Faith1: gp38; Jden_2334; phage(gi338827050)  1e-44  Click
31 2503508..2503520  attR    AGGACTCTCATGA  N/A  Click