Definition Actinosynnema mirum DSM 43827 chromosome, complete genome.
Accession NC_013093
Length 8,248,144
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 35 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1781565..1781577  attL    GCCGGGACGTGGC  N/A  Click
2 1781757..1782734  PHAGE_Thermu_26: phage XerD-like integrase; Amir_1619; phage(gi157265417)  6e-13  Click
3 1782731..1783006  hypothetical protein; Amir_1620  N/A  Click
4 1783003..1783188  hypothetical protein; Amir_1621  N/A  Click
5 1783232..1783483  PHAGE_Mycoba_Porky: gp52; Amir_1622; phage(gi194303348)  2e-08  Click
6 complement(1783476..1783676)  hypothetical protein; Amir_1623  N/A  Click
7 complement(1783747..1783950)  hypothetical protein; Amir_1624  N/A  Click
8 complement(1783947..1784186)  hypothetical protein; Amir_1625  N/A  Click
9 1784770..1785558  hypothetical protein; Amir_1626  N/A  Click
10 1785587..1785766  hypothetical protein; Amir_1627  N/A  Click
11 complement(1785822..1786766)  PHAGE_Strept_R4: hypothetical protein; Amir_1628; phage(gi414090008)  1e-05  Click
12 complement(1786791..1787978)  PHAGE_Strept_R4: hypothetical protein; Amir_1629; phage(gi414090004)  5e-28  Click
13 complement(1787948..1788832)  PHAGE_Propio_P100_1: putative minor tail protein; Amir_1630; phage(gi410491286)  1e-13  Click
14 complement(1788825..1792739)  PHAGE_Pectob_My1: YadA domain-containing protein; Amir_1631; phage(gi410491156)  7e-27  Click
15 complement(1792764..1792922)  hypothetical protein; Amir_1632  N/A  Click
16 complement(1793009..1793488)  hypothetical protein; Amir_1633  N/A  Click
17 complement(1793501..1793971)  PHAGE_Rhodoc_REQ3: hypothetical protein; Amir_1634; phage(gi372450017)  6e-13  Click
18 complement(1793968..1794432)  hypothetical protein; Amir_1635  N/A  Click
19 complement(1794429..1794779)  hypothetical protein; Amir_1636  N/A  Click
20 complement(1794779..1795099)  hypothetical protein; Amir_1637  N/A  Click
21 complement(1795093..1795536)  hypothetical protein; Amir_1638  N/A  Click
22 complement(1795533..1797497)  PHAGE_Equid__9: envelope glycoprotein J; Amir_1639; phage(gi216905924)  3e-07  Click
23 complement(1797501..1797680)  hypothetical protein; Amir_1640  N/A  Click
24 complement(1797677..1798336)  PHAGE_Actino_phiAsp2: Pas66; Amir_1641; phage(gi48697467)  7e-08  Click
25 complement(1798360..1798722)  PHAGE_Strept_6: hypothetical protein SPMV1_gp52; Amir_1642; phage(gi93007458)  2e-12  Click
26 complement(1798715..1798969)  hypothetical protein; Amir_1643  N/A  Click
27 complement(1799059..1799370)  hypothetical protein; Amir_1644  N/A  Click
28 complement(1799372..1800592)  PHAGE_Pseudo_UFV_P2: major head protein; Amir_1645; phage(gi410491826)  3e-08  Click
29 complement(1800706..1801410)  PHAGE_Papiin_2: large tegument protein; Amir_1646; phage(gi83722605)  2e-06  Click
30 complement(1801435..1801707)  PHAGE_Acinet_Ac42: hypothetical protein; Amir_1647; phage(gi311992509)  5e-11  Click
31 complement(1801731..1801940)  hypothetical protein; Amir_1648  N/A  Click
32 1802067..1802546  hypothetical protein; Amir_1649  N/A  Click
33 complement(1802599..1803663)  PHAGE_Rhodoc_REQ3: minor capsid protein; Amir_1650; phage(gi372450008)  1e-23  Click
34 complement(1803663..1805273)  PHAGE_Rhodoc_REQ3: portal protein; Amir_1651; phage(gi372450007)  2e-36  Click
35 1805405..1805812  hypothetical protein; Amir_1652  N/A  Click
36 complement(1805793..1807106)  PHAGE_Rhodoc_REQ3: terminase large subunit; Amir_1653; phage(gi372450006)  1e-74  Click
37 1819857..1819869  attR    GCCGGGACGTGGC  N/A  Click
Region 2, total : 12 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 6644378..6644391  attL    TGCTCGGCGGCGGC  N/A  Click
2 6646242..6650357  PHAGE_Tsukam_TPA2: tape measure protein; Amir_5635; phage(gi326425051)  7e-84  Click
3 6650368..6651813  PHAGE_Strept_SV1: hypothetical protein; Amir_5636; phage(gi410491737)  6e-10  Click
4 6651863..6652993  PHAGE_Strept_SV1: hypothetical protein; Amir_5637; phage(gi410491738)  2e-12  Click
5 6652990..6654129  PHAGE_Microb_Min1: hypothetical protein MPMin1_gp51; Amir_5638; phage(gi149882832)  6e-14  Click
6 6654129..6654839  PHAGE_Strept_SV1: hypothetical protein; Amir_5639; phage(gi410491740)  6e-10  Click
7 complement(6654840..6655265)  PHAGE_Emilia_86: hypothetical protein EhV364; Amir_5640; phage(gi73852838)  5e-10  Click
8 6655352..6655609  hypothetical protein; Amir_5641  N/A  Click
9 6655606..6655986  hypothetical protein; Amir_5642  N/A  Click
10 6655983..6656990  PHAGE_Mycoba_Omega: gp50; Amir_5643; phage(gi29566787)  8e-29  Click
11 6656987..6658045  hypothetical protein; Amir_5644  N/A  Click
12 6658454..6658687  PHAGE_Cronob_vB_CsaM_GAP32: hypothetical protein; Amir_5646; phage(gi414087356)  5e-16  Click
13 6658634..6658647  attR    TGCTCGGCGGCGGC  N/A  Click
14 complement(6658747..6659979)  PHAGE_Rhodoc_REQ3: phage integrase; Amir_5647; phage(gi372449972)  5e-42  Click