| Definition | Pectobacterium carotovorum subsp. carotovorum PC1, complete genome. |
|---|---|
| Accession | NC_012917 |
| Length | 4,862,913 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 13 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 833155..833169 | attL TGGTGGAGCTGGGGG | N/A | Click |
| 2 | complement(834509..836836) | PHAGE_Entero_P4: DNA primase; PC1_0710; phage(gi9627512) | 0.0 | Click |
| 3 | complement(836847..837188) | PHAGE_Entero_P4: hypothetical protein P4p07; PC1_0711; phage(gi9627513) | 6e-15 | Click |
| 4 | complement(837185..837451) | hypothetical protein; PC1_0712 | N/A | Click |
| 5 | complement(837448..837642) | hypothetical protein; PC1_0713 | N/A | Click |
| 6 | complement(838188..838412) | hypothetical protein; PC1_0715 | N/A | Click |
| 7 | complement(838409..838669) | PHAGE_Entero_P4: transcriptional regulator; PC1_0716; phage(gi9627517) | 4e-17 | Click |
| 8 | 839217..839978 | PHAGE_Entero_P4: head size determination protein sid; PC1_0717; phage(gi9627518) | 2e-30 | Click |
| 9 | 839975..840223 | PHAGE_Yersin_413C: Ogr; PC1_0718; phage(gi30065732) | 2e-14 | Click |
| 10 | complement(840661..842586) | PHAGE_Staphy_phiN315: hypothetical protein SA1795; PC1_0719; phage(gi30043973) | 1e-08 | Click |
| 11 | complement(842579..843070) | hypothetical protein; PC1_0720 | N/A | Click |
| 12 | complement(843070..843651) | hypothetical protein; PC1_0721 | N/A | Click |
| 13 | complement(843638..844000) | hypothetical protein; PC1_0722 | N/A | Click |
| 14 | complement(844042..845250) | PHAGE_Entero_P4: integrase; PC1_0723; phage(gi9627511) | 1e-66 | Click |
| 15 | 845434..845448 | attR TGGTGGAGCTGGGGG | N/A | Click |
Region 2, total : 24 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1811972..1813699 | PHAGE_Bacill_SPBc2: ABC transporter; PC1_1555; phage(gi9630145) | 1e-31 | Click |
| 2 | 1813727..1815055 | type I secretion membrane fusion protein, HlyD family; PC1_1556 | N/A | Click |
| 3 | 1815058..1816425 | type I secretion outer membrane protein, TolC family; PC1_1557 | N/A | Click |
| 4 | 1816636..1816965 | PHAGE_Burkho_BcepMu: gp21; PC1_1558; phage(gi48696931) | 2e-27 | Click |
| 5 | 1816967..1817608 | PHAGE_Burkho_BcepMu: gp22; PC1_1559; phage(gi48696932) | 5e-56 | Click |
| 6 | 1817598..1818272 | PHAGE_Burkho_BcepMu: gp23; PC1_1560; phage(gi48696933) | 9e-14 | Click |
| 7 | 1818262..1818591 | PHAGE_Burkho_BcepMu: gp25; PC1_1561; phage(gi48696935) | 2e-22 | Click |
| 8 | 1818584..1818895 | PHAGE_Burkho_BcepMu: gp26; PC1_1562; phage(gi48696936) | 3e-23 | Click |
| 9 | 1819156..1819623 | PHAGE_Burkho_BcepMu: gp37; PC1_1563; phage(gi48696947) | 2e-24 | Click |
| 10 | 1819620..1819817 | PHAGE_Burkho_BcepMu: gp38; PC1_1564; phage(gi48696948) | 5e-11 | Click |
| 11 | 1819807..1821234 | PHAGE_Burkho_BcepMu: gp39; PC1_1565; phage(gi48696949) | 0.0 | Click |
| 12 | 1821234..1821758 | PHAGE_Burkho_BcepMu: gp40; PC1_1566; phage(gi48696950) | 2e-69 | Click |
| 13 | 1821815..1822111 | PHAGE_Synech_RSM4: Ferredoxin; PC1_1567; phage(gi255928949) | 1e-21 | Click |
| 14 | 1822251..1822571 | PHAGE_Burkho_BcepMu: gp41; PC1_1568; phage(gi48696951) | 8e-09 | Click |
| 15 | 1822882..1825359 | PHAGE_Burkho_BcepMu: gp44; PC1_1569; phage(gi48696954) | 2e-95 | Click |
| 16 | 1825359..1826288 | PHAGE_Burkho_BcepMu: gp45; PC1_1570; phage(gi48696955) | 1e-63 | Click |
| 17 | 1826278..1826490 | PHAGE_Burkho_BcepMu: gp46; PC1_1571; phage(gi48696956) | 7e-18 | Click |
| 18 | 1826478..1827638 | PHAGE_Burkho_BcepMu: gp47; PC1_1572; phage(gi48696957) | 2e-91 | Click |
| 19 | 1827635..1828216 | PHAGE_Burkho_BcepMu: gp48; PC1_1573; phage(gi48696958) | 4e-46 | Click |
| 20 | 1828276..1828623 | PHAGE_Burkho_BcepMu: gp49; PC1_1574; phage(gi48696959) | 1e-34 | Click |
| 21 | 1828614..1829717 | PHAGE_Burkho_BcepMu: gp50; PC1_1575; phage(gi48696960) | 2e-107 | Click |
| 22 | 1829710..1830291 | PHAGE_Burkho_BcepMu: gp51; PC1_1576; phage(gi48696961) | 2e-60 | Click |
| 23 | 1830294..1832342 | PHAGE_Entero_Mu: tail fiber fragment; PC1_1577; phage(gi19584574) | 3e-48 | Click |
| 24 | 1832342..1832962 | PHAGE_Yersin_phiR1_37: putative tail fiber assembly protein; PC1_1578; phage(gi358356780) | 8e-32 | Click |
Region 3, total : 48 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2986224..2987639 | PHAGE_Pseudo_YuA: hypothetical protein; PC1_2619; phage(gi162135126) | 1e-06 | Click |
| 2 | 2987915..2988133 | PHAGE_Entero_phiFL3A: hypothetical protein; PC1_2620; phage(gi281416224) | 6e-05 | Click |
| 3 | 2988353..2988709 | hypothetical protein; PC1_2621 | N/A | Click |
| 4 | 2989037..2989100 | attL TTAAATCAATGGTGCCCGGGGCGGGACTTGAACCCGCACAGCGCGAACGCCGAGGGATTTTAAA | N/A | Click |
| 5 | complement(2989228..2990235) | PHAGE_Haemop_HP2: integrase; PC1_2622; phage(gi17981816) | 6e-104 | Click |
| 6 | complement(2990256..2991086) | PHAGE_Staphy_77: 77ORF009; PC1_2623; phage(gi41189524) | 1e-11 | Click |
| 7 | complement(2991135..2991737) | hypothetical protein; PC1_2624 | N/A | Click |
| 8 | complement(2991753..2992097) | hypothetical protein; PC1_2625 | N/A | Click |
| 9 | complement(2992389..2992802) | PHAGE_Pseudo_B3: transcriptional regulator; PC1_2626; phage(gi56692586) | 2e-18 | Click |
| 10 | 2992863..2993138 | hypothetical protein; PC1_2627 | N/A | Click |
| 11 | complement(2993110..2993571) | hypothetical protein; PC1_2628 | N/A | Click |
| 12 | 2993691..2993882 | PHAGE_Burkho_phiE202: gp20, conserved hypothetical protein; PC1_2629; phage(gi134288764) | 2e-07 | Click |
| 13 | 2993894..2994106 | PHAGE_Vibrio_kappa: putative regulator; PC1_2630; phage(gi165970239) | 1e-06 | Click |
| 14 | 2994109..2994339 | hypothetical protein; PC1_2631 | N/A | Click |
| 15 | 2994336..2994536 | hypothetical protein; PC1_2632 | N/A | Click |
| 16 | 2994542..2994904 | PHAGE_Entero_2: hypothetical protein STM2733.Fels2; PC1_2633; phage(gi169936058) | 7e-24 | Click |
| 17 | 2994974..2995213 | PHAGE_Entero_PsP3: gp33; PC1_2634; phage(gi41057385) | 5e-07 | Click |
| 18 | 2995210..2995788 | PHAGE_Salmon_ST64B: Endodeoxyribonuclease; PC1_2635; phage(gi23505474) | 1e-43 | Click |
| 19 | 2995785..2996627 | PHAGE_Erwini_phiEaH2: DNA adenine methylase; PC1_2636; phage(gi431810598) | 9e-62 | Click |
| 20 | 2996620..2996913 | hypothetical protein; PC1_2637 | N/A | Click |
| 21 | 2996913..2999423 | PHAGE_Entero_PsP3: gp36; PC1_2638; phage(gi41057388) | 7e-110 | Click |
| 22 | 2999557..2999769 | hypothetical protein; PC1_2639 | N/A | Click |
| 23 | complement(3000175..3001242) | PHAGE_Salmon_RE_2010: capsid packaging protein; PC1_2640; phage(gi418489696) | 2e-111 | Click |
| 24 | complement(3001245..3002957) | PHAGE_Entero_PsP3: gp3; PC1_2641; phage(gi41057355) | 3e-156 | Click |
| 25 | 3003104..3003949 | PHAGE_Erwini_ENT90: capsid scaffolding protein; PC1_2642; phage(gi431810944) | 4e-54 | Click |
| 26 | 3003984..3005033 | PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; PC1_2643; phage(gi145708082) | 1e-95 | Click |
| 27 | 3005085..3005906 | PHAGE_Erwini_ENT90: terminase endonuclease subunit; PC1_2644; phage(gi431810947) | 3e-42 | Click |
| 28 | 3006003..3006509 | PHAGE_Burkho_2: gp50, phage head completion protein (GPL); PC1_2645; phage(gi134288689) | 2e-27 | Click |
| 29 | 3006509..3006712 | PHAGE_Entero_PsP3: gp8; PC1_2646; phage(gi41057360) | 2e-15 | Click |
| 30 | 3006703..3007005 | phage-holin analog protein; PC1_2647 | N/A | Click |
| 31 | 3006995..3007471 | PHAGE_Bacter_2: lysozyme; PC1_2648; phage(gi212499717) | 1e-38 | Click |
| 32 | 3007453..3007878 | PHAGE_Entero_SfV: putative Rz lytic protein; PC1_2649; phage(gi19549038) | 3e-10 | Click |
| 33 | 3007995..3008483 | PHAGE_Ralsto_phiRSA1: tail completion protein-like protein; PC1_2650; phage(gi145708090) | 1e-29 | Click |
| 34 | 3008486..3009127 | PHAGE_Pseudo_phiCTX: predicted tail completion; PC1_2651; phage(gi17313233) | 6e-09 | Click |
| 35 | 3009226..3009810 | PHAGE_Entero_PsP3: gp15; PC1_2652; phage(gi41057367) | 5e-51 | Click |
| 36 | 3009807..3010166 | PHAGE_Entero_PsP3: gp16; PC1_2653; phage(gi41057368) | 5e-29 | Click |
| 37 | 3010163..3011074 | PHAGE_Entero_PsP3: gp17; PC1_2654; phage(gi41057369) | 8e-110 | Click |
| 38 | 3011067..3011675 | PROPHAGE_Salmon_Ty2: putative phage tail protein; PC1_2655; phage(gi29143753) | 2e-73 | Click |
| 39 | 3011672..3013654 | PHAGE_Entero_PsP3: gp19; PC1_2656; phage(gi41057371) | 3e-63 | Click |
| 40 | 3013666..3013815 | hypothetical protein; PC1_2657 | N/A | Click |
| 41 | complement(3013859..3014905) | PHAGE_Escher_TL_2011b: hypothetical protein; PC1_2658; phage(gi418487678) | 3e-22 | Click |
| 42 | complement(3015205..3015627) | PHAGE_Entero_PsP3: gp25; PC1_2659; phage(gi41057377) | 7e-41 | Click |
| 43 | complement(3015638..3018736) | PHAGE_Entero_PsP3: gp24; PC1_2660; phage(gi41057376) | 2e-57 | Click |
| 44 | complement(3018733..3018849) | PHAGE_Entero_PsP3: gp23.5; PC1_2661; phage(gi41057394) | 5e-06 | Click |
| 45 | complement(3018882..3019193) | PHAGE_Entero_PsP3: gp23; PC1_2662; phage(gi41057375) | 2e-12 | Click |
| 46 | complement(3019209..3019724) | PHAGE_Entero_PsP3: gp22; PC1_2663; phage(gi41057374) | 2e-42 | Click |
| 47 | complement(3019735..3020928) | PHAGE_Entero_PsP3: gp21; PC1_2664; phage(gi41057373) | 4e-120 | Click |
| 48 | 3021085..3022218 | PHAGE_Entero_PsP3: gp26; PC1_2665; phage(gi41057378) | 6e-99 | Click |
| 49 | 3022269..3022511 | PHAGE_Entero_PsP3: Pag; PC1_2666; phage(gi41057379) | 9e-05 | Click |
| 50 | 3022684..3022747 | attR TTAAATCAATGGTGCCCGGGGCGGGACTTGAACCCGCACAGCGCGAACGCCGAGGGATTTTAAA | N/A | Click |
Region 4, total : 48 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 3573259..3573300 | attL AACTTTCGGATGTTGCGAAAGCGCTATCTTAGTTAAGACGCT | N/A | Click |
| 2 | complement(3573374..3574432) | PHAGE_Entero_PsP3: gp27; PC1_3152; phage(gi41057380) | 1e-159 | Click |
| 3 | complement(3575062..3575961) | hypothetical protein; PC1_3153 | N/A | Click |
| 4 | complement(3575975..3576832) | PHAGE_Entero_PsP3: CI; PC1_3154; phage(gi41057393) | 2e-75 | Click |
| 5 | 3576955..3577290 | PHAGE_Entero_PsP3: gp30; PC1_3155; phage(gi41057382) | 3e-19 | Click |
| 6 | 3577329..3577838 | PHAGE_Entero_PsP3: gp31; PC1_3156; phage(gi41057383) | 2e-48 | Click |
| 7 | complement(3578313..3578507) | hypothetical protein; PC1_3157 | N/A | Click |
| 8 | 3578642..3578818 | hypothetical protein; PC1_3158 | N/A | Click |
| 9 | 3578815..3579315 | PHAGE_Yersin_413C: gpB; PC1_3159; phage(gi30065737) | 1e-53 | Click |
| 10 | 3579378..3579626 | PHAGE_Entero_P2: hypothetical protein P2p36; PC1_3160; phage(gi9630362) | 4e-10 | Click |
| 11 | 3579626..3579934 | hypothetical protein; PC1_3161 | N/A | Click |
| 12 | 3579934..3580158 | PHAGE_Entero_PsP3: gp34; PC1_3162; phage(gi41057386) | 8e-20 | Click |
| 13 | 3580170..3580436 | hypothetical protein; PC1_3163 | N/A | Click |
| 14 | 3580433..3582736 | PHAGE_Entero_PsP3: gp36; PC1_3164; phage(gi41057388) | 2e-96 | Click |
| 15 | 3582733..3583041 | hypothetical protein; PC1_3165 | N/A | Click |
| 16 | 3583041..3583232 | PHAGE_Entero_PsP3: gp37; PC1_3166; phage(gi41057391) | 7e-10 | Click |
| 17 | 3583232..3583570 | PHAGE_Pectob_ZF40: hypothetical protein; PC1_3167; phage(gi422936662) | 8e-38 | Click |
| 18 | 3584260..3584778 | hypothetical protein; PC1_3168 | N/A | Click |
| 19 | 3584778..3585137 | hypothetical protein; PC1_3169 | N/A | Click |
| 20 | complement(3585617..3586636) | PHAGE_Entero_PsP3: gp1; PC1_3170; phage(gi41057353) | 4e-148 | Click |
| 21 | complement(3586633..3588402) | PHAGE_Entero_PsP3: gp3; PC1_3171; phage(gi41057355) | 0.0 | Click |
| 22 | 3588542..3589396 | PHAGE_Entero_PsP3: gp4; PC1_3172; phage(gi41057356) | 2e-101 | Click |
| 23 | 3589444..3590571 | PHAGE_Entero_PsP3: gp5; PC1_3173; phage(gi41057357) | 2e-139 | Click |
| 24 | 3590575..3591234 | PHAGE_Entero_PsP3: gp6; PC1_3174; phage(gi41057358) | 5e-65 | Click |
| 25 | 3591326..3591829 | PHAGE_Entero_PsP3: gp7; PC1_3175; phage(gi41057359) | 2e-52 | Click |
| 26 | 3591829..3592032 | PHAGE_Entero_PsP3: gp8; PC1_3176; phage(gi41057360) | 6e-20 | Click |
| 27 | 3592035..3592244 | PHAGE_Salmon_RE_2010: lysis protein S; PC1_3177; phage(gi418489703) | 8e-07 | Click |
| 28 | 3592228..3592737 | PHAGE_Salmon_RE_2010: lysozyme; PC1_3178; phage(gi418489704) | 8e-57 | Click |
| 29 | 3592734..3593180 | PHAGE_Entero_PsP3: gp11; PC1_3179; phage(gi41057363) | 7e-16 | Click |
| 30 | 3593149..3593307 | PHAGE_Entero_PsP3: gp12; PC1_3180; phage(gi41057364) | 6e-15 | Click |
| 31 | 3593270..3593725 | PHAGE_Entero_PsP3: gp13; PC1_3181; phage(gi41057365) | 3e-48 | Click |
| 32 | 3593718..3594167 | PHAGE_Entero_PsP3: gp14; PC1_3182; phage(gi41057366) | 3e-45 | Click |
| 33 | complement(3594196..3594537) | PHAGE_Azospi_Cd: Helix-turn-helix motif; PC1_3183; phage(gi168495160) | 1e-08 | Click |
| 34 | complement(3594792..3595106) | plasmid maintenance system killer; PC1_3184 | N/A | Click |
| 35 | 3595444..3596073 | PHAGE_Stx2_c_II: putative antirepressor-like protein; PC1_3185; phage(gi302393152) | 5e-39 | Click |
| 36 | complement(3596135..3596509) | QacE-like protein; PC1_3186 | N/A | Click |
| 37 | 3596663..3597304 | PHAGE_Entero_PsP3: gp15; PC1_3187; phage(gi41057367) | 9e-90 | Click |
| 38 | 3597301..3597645 | PHAGE_Entero_PsP3: gp16; PC1_3188; phage(gi41057368) | 4e-34 | Click |
| 39 | 3597650..3598558 | PHAGE_Entero_PsP3: gp17; PC1_3189; phage(gi41057369) | 5e-127 | Click |
| 40 | 3598551..3599162 | PHAGE_Entero_PsP3: gp18; PC1_3190; phage(gi41057370) | 9e-71 | Click |
| 41 | 3599159..3601252 | PROPHAGE_Salmon_Ty2: variable tail fiber protein; PC1_3191; phage(gi29143754) | 5e-122 | Click |
| 42 | 3601541..3602710 | PHAGE_Entero_PsP3: gp21; PC1_3192; phage(gi41057373) | 0.0 | Click |
| 43 | 3602725..3603246 | PHAGE_Entero_PsP3: gp22; PC1_3193; phage(gi41057374) | 3e-77 | Click |
| 44 | 3603314..3603610 | PHAGE_Entero_PsP3: gp23; PC1_3194; phage(gi41057375) | 5e-27 | Click |
| 45 | 3603625..3603747 | PHAGE_Entero_PsP3: gp23.5; PC1_3195; phage(gi41057394) | 2e-12 | Click |
| 46 | 3603740..3606619 | PHAGE_Entero_PsP3: gp24; PC1_3196; phage(gi41057376) | 2e-106 | Click |
| 47 | 3606621..3607106 | PHAGE_Entero_PsP3: gp25; PC1_3197; phage(gi41057377) | 1e-51 | Click |
| 48 | 3607103..3608251 | PHAGE_Entero_PsP3: gp26; PC1_3198; phage(gi41057378) | 7e-146 | Click |
| 49 | 3608339..3608557 | PHAGE_Entero_PsP3: Pag; PC1_3199; phage(gi41057379) | 2e-27 | Click |
| 50 | 3608691..3608732 | attR AACTTTCGGATGTTGCGAAAGCGCTATCTTAGTTAAGACGCT | N/A | Click |