Definition Ralstonia pickettii 12D chromosome chromosome 1, complete sequence.
Accession NC_012856
Length 3,647,724
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2273144..2273473  PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp01; Rpic12D_2133; phage(gi209901314)  1e-42  Click
2 2273674..2273841  hypothetical protein; Rpic12D_2134  N/A  Click
3 2273841..2274161  hypothetical protein; Rpic12D_2135  N/A  Click
4 2274322..2274828  hypothetical protein; Rpic12D_2136  N/A  Click
5 2275099..2275350  hypothetical protein; Rpic12D_2137  N/A  Click
6 2275447..2276967  PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp09; Rpic12D_2138; phage(gi209901322)  2e-20  Click
7 2276980..2277309  hypothetical protein; Rpic12D_2139  N/A  Click
8 2277311..2278141  PHAGE_Vibrio_fs2: putative maturation protein; Rpic12D_2140; phage(gi9630769)  2e-63  Click
9 2278149..2278313  hypothetical protein; Rpic12D_2141  N/A  Click
10 2278734..2279663  PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp12; Rpic12D_2142; phage(gi209901325)  1e-122  Click
11 complement(2279635..2279844)  PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp13; Rpic12D_2143; phage(gi209901326)  6e-07  Click
12 complement(2279863..2280453)  PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp14; Rpic12D_2144; phage(gi209901327)  6e-87  Click
13 complement(2280506..2280595)  tRNA  N/A  Click
14 complement(2280675..2281991)  seryl-tRNA synthetase; Rpic12D_2145  N/A  Click
15 complement(2282071..2283420)  PHAGE_Vibrio_vB_VpaS_MAR10: putative DNA polymerase III; Rpic12D_2146; phage(gi428782157)  1e-13  Click
16 complement(2283468..2284772)  PHAGE_Burkho_phi1026b: gp59; Rpic12D_2147; phage(gi38707949)  3e-47  Click
17 complement(2284804..2285763)  agmatinase; Rpic12D_2148  N/A  Click
18 2285897..2286793  PHAGE_Burkho_phi1026b: gp58; Rpic12D_2149; phage(gi38707948)  4e-06  Click
Region 2, total : 58 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2376361..2377302  PHAGE_Burkho_phi1026b: gp58; Rpic12D_2231; phage(gi38707948)  8e-07  Click
2 2377343..2378512  amino acid ABC transporter periplasmic protein; Rpic12D_2232  N/A  Click
3 2378534..2379418  PHAGE_Synech_syn9: 6-phosphogluconate dehydrogenase; Rpic12D_2233; phage(gi162290189)  4e-09  Click
4 2379490..2379574  tRNA  N/A  Click
5 2379559..2379574  attL    CCGGCCTCGGGCACCA  N/A  Click
6 2379729..2380754  PHAGE_Mannhe_phiMHaA1: integrase; Rpic12D_2234; phage(gi109289985)  2e-38  Click
7 complement(2380756..2381034)  PHAGE_Pseudo_D3: Orf33; Rpic12D_2235; phage(gi9635625)  4e-12  Click
8 complement(2381031..2381444)  D,D-carboxypeptidase VanY/endolysin; Rpic12D_2236  N/A  Click
9 complement(2381450..2381965)  PHAGE_Thermo_THSA_485A: hypothetical protein; Rpic12D_2237; phage(gi397912617)  2e-22  Click
10 complement(2382046..2382591)  PHAGE_Salmon_PVP_SE1: lysozyme; Rpic12D_2238; phage(gi363539668)  2e-36  Click
11 complement(2382584..2382907)  PHAGE_Acinet_Bphi_B1251: hypothetical protein; Rpic12D_2239; phage(gi423262030)  1e-22  Click
12 2383108..2384229  acyltransferase; Rpic12D_2240  N/A  Click
13 2384351..2384632  putative XRE family transcriptional regulator; Rpic12D_2241  N/A  Click
14 2384734..2385276  G-D-S-L family lipolytic protein; Rpic12D_2242  N/A  Click
15 complement(2385517..2386917)  PHAGE_Pseudo_JG024: putative tail fiber protein; Rpic12D_2243; phage(gi418486941)  1e-08  Click
16 complement(2386978..2387637)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p49; Rpic12D_2244; phage(gi31544052)  2e-08  Click
17 complement(2387639..2388829)  PHAGE_Iodoba_phiPLPE: gp61 putative baseplate protein; Rpic12D_2245; phage(gi197085675)  1e-46  Click
18 complement(2388826..2389179)  PHAGE_Klebsi_JD001: hypothetical protein; Rpic12D_2246; phage(gi448245171)  3e-20  Click
19 complement(2389188..2389859)  PHAGE_Haemop_Aaphi23: putative baseplate protein; Rpic12D_2247; phage(gi31544048)  6e-28  Click
20 complement(2389897..2390820)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p45; Rpic12D_2248; phage(gi31544047)  6e-28  Click
21 complement(2390817..2391128)  PHAGE_Psychr_pOW20_A: hypothetical protein; Rpic12D_2249; phage(gi472339842)  9e-08  Click
22 complement(2391128..2391742)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p43; Rpic12D_2250; phage(gi31544045)  2e-05  Click
23 complement(2391739..2393637)  PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber/lysozyme protein; Rpic12D_2251; phage(gi422937553)  9e-22  Click
24 complement(2393627..2393782)  hypothetical protein; Rpic12D_2252  N/A  Click
25 complement(2393818..2394264)  bacteriophage protein; Rpic12D_2253  N/A  Click
26 complement(2394277..2394717)  PHAGE_Pseudo_vB_PaeM_C2_10_Ab1: hypothetical protein; Rpic12D_2254; phage(gi431809991)  1e-05  Click
27 complement(2394726..2396543)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p39; Rpic12D_2255; phage(gi31544040)  4e-44  Click
28 complement(2396603..2397184)  bacteriophage protein; Rpic12D_2256  N/A  Click
29 complement(2397188..2397559)  hypothetical protein; Rpic12D_2257  N/A  Click
30 complement(2397559..2398092)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p37; Rpic12D_2258; phage(gi31544037)  1e-05  Click
31 complement(2398089..2398475)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p36; Rpic12D_2259; phage(gi31544036)  3e-08  Click
32 complement(2398472..2398660)  truncated bacteriophage protein; Rpic12D_2260  N/A  Click
33 complement(2398663..2399652)  PHAGE_Vibrio_vB_VchM_138: putative major capsid protein; Rpic12D_2261; phage(gi422936575)  5e-22  Click
34 complement(2399760..2400245)  bacteriophage protein; Rpic12D_2262  N/A  Click
35 complement(2400259..2401563)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p33; Rpic12D_2263; phage(gi31544033)  2e-21  Click
36 complement(2401566..2402198)  PHAGE_Haemop_Aaphi23: putative minor head protein; Rpic12D_2264; phage(gi31544030)  1e-16  Click
37 complement(2402149..2403720)  PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p31; Rpic12D_2265; phage(gi31544029)  2e-42  Click
38 complement(2403717..2405255)  PHAGE_Klebsi_JD001: TerL; Rpic12D_2266; phage(gi448245137)  3e-106  Click
39 complement(2405212..2405868)  PHAGE_Escher_HK639: terminase small subunit; Rpic12D_2267; phage(gi356870601)  3e-47  Click
40 complement(2406277..2406450)  hypothetical protein; Rpic12D_2268  N/A  Click
41 complement(2406627..2406827)  hypothetical protein; Rpic12D_2269  N/A  Click
42 complement(2406830..2407180)  hypothetical protein; Rpic12D_2270  N/A  Click
43 complement(2407177..2407602)  PHAGE_Burkho_KS9: hypothetical protein gp47; Rpic12D_2271; phage(gi255033730)  8e-05  Click
44 complement(2407614..2407889)  PHAGE_Burkho_BcepMigl: hypothetical protein; Rpic12D_2272; phage(gi431809874)  1e-13  Click
45 complement(2407886..2408407)  hypothetical protein; Rpic12D_2273  N/A  Click
46 complement(2408404..2408814)  hypothetical protein; Rpic12D_2274  N/A  Click
47 complement(2408924..2409373)  PHAGE_Salmon_SPN1S: hypothetical protein; Rpic12D_2275; phage(gi374531230)  3e-30  Click
48 complement(2409373..2409585)  hypothetical protein; Rpic12D_2276  N/A  Click
49 complement(2409582..2410355)  PHAGE_Halovi_HVTV_1: hypothetical protein; Rpic12D_2277; phage(gi443404620)  2e-23  Click
50 complement(2410412..2411779)  PHAGE_Entero_P1: Ban; Rpic12D_2278; phage(gi46401697)  1e-91  Click
51 complement(2411776..2412609)  PHAGE_Xantho_CP2: hypothetical protein; Rpic12D_2279; phage(gi448245213)  9e-46  Click
52 complement(2412767..2413063)  hypothetical protein; Rpic12D_2280  N/A  Click
53 complement(2413077..2413469)  PHAGE_Xylell_Xfas53: gp19; Rpic12D_2281; phage(gi273810438)  3e-22  Click
54 complement(2413568..2413807)  XRE family transcriptional regulator; Rpic12D_2282  N/A  Click
55 2413882..2414760  PHAGE_Xylell_Xfas53: CI phage repressor; Rpic12D_2283; phage(gi273810436)  3e-25  Click
56 2415360..2415671  hypothetical protein; Rpic12D_2284  N/A  Click
57 2415675..2415836  hypothetical protein; Rpic12D_2285  N/A  Click
58 2415849..2416205  hypothetical protein; Rpic12D_2286  N/A  Click
59 2416212..2416373  hypothetical protein; Rpic12D_2287  N/A  Click
60 2416399..2417232  PHAGE_Edward_MSW_3: hypothetical protein; Rpic12D_2288; phage(gi448261087)  1e-21  Click
61 2424334..2424349  attR    CCGGCCTCGGGCACCA  N/A  Click