| Definition | Rhodococcus opacus B4, complete genome. |
|---|---|
| Accession | NC_012522 |
| Length | 7,913,450 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 11 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(320326..320688) | PROPHAGE_Brucel_1330: IS5 family transposase orfB; ROP_03000; phage(gi23501423) | 5e-05 | Click |
| 2 | complement(320775..321134) | PROPHAGE_Brucel_1330: IS5 family transposase orfA; ROP_03010; phage(gi23501422) | 4e-07 | Click |
| 3 | complement(321359..322498) | PHAGE_Gifsy_1: transposase; ROP_03020; phage(gi169257226) | 1e-98 | Click |
| 4 | complement(322793..323206) | MerR family transcriptional regulator; ROP_03030 | N/A | Click |
| 5 | 323261..325357 | PHAGE_Strept_VWB: hypothetical protein VWBp25; ROP_03040; phage(gi41057241) | 5e-06 | Click |
| 6 | 323562..324362 | drug resistance efflux protein; ROP_03050 | N/A | Click |
| 7 | complement(324359..325195) | citrate lyase beta chain; ROP_03060 | N/A | Click |
| 8 | complement(325326..325613) | hypothetical protein; ROP_03070 | N/A | Click |
| 9 | complement(325681..326391) | PHAGE_Rhodoc_REQ1: lysin; ROP_03080; phage(gi372450095) | 1e-25 | Click |
| 10 | 326989..328005 | ABC transporter substrate-binding protein; ROP_03090 | N/A | Click |
| 11 | 327989..329656 | PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; ROP_03100; phage(gi163932195) | 3e-05 | Click |
Region 2, total : 28 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4321619..4322419 | PHAGE_Coryne_P1201: putative antirepressor; ROP_40070; phage(gi157310914) | 3e-29 | Click |
| 2 | 4322416..4322961 | PHAGE_Mycoba_Omega: gp104; ROP_40080; phage(gi29566838) | 3e-08 | Click |
| 3 | 4323081..4323392 | hypothetical protein; ROP_40090 | N/A | Click |
| 4 | 4323382..4323570 | hypothetical protein; ROP_40100 | N/A | Click |
| 5 | 4323563..4323799 | hypothetical protein; ROP_40110 | N/A | Click |
| 6 | 4323804..4323998 | hypothetical protein; ROP_40120 | N/A | Click |
| 7 | 4324057..4324779 | PHAGE_Rhodoc_REQ1: hypothetical protein; ROP_40130; phage(gi372450061) | 5e-07 | Click |
| 8 | 4324818..4325105 | PHAGE_Mycoba_TM4: hypothetical protein TM4_gp54; ROP_40140; phage(gi18496939) | 4e-11 | Click |
| 9 | 4325102..4325392 | hypothetical protein; ROP_40150 | N/A | Click |
| 10 | 4325389..4325967 | hypothetical protein; ROP_40160 | N/A | Click |
| 11 | 4326109..4326882 | PHAGE_Rhodoc_REQ1: hypothetical protein; ROP_40170; phage(gi372450070) | 1e-57 | Click |
| 12 | 4326879..4327166 | PHAGE_Mycoba_Porky: gp120; ROP_40180; phage(gi194303414) | 2e-10 | Click |
| 13 | 4327238..4328032 | PHAGE_Mycoba_CrimD: gp67; ROP_40190; phage(gi304360919) | 5e-33 | Click |
| 14 | 4328116..4328283 | hypothetical protein; ROP_40200 | N/A | Click |
| 15 | 4328288..4328485 | hypothetical protein; ROP_40210 | N/A | Click |
| 16 | 4328482..4328697 | hypothetical protein; ROP_40220 | N/A | Click |
| 17 | 4328694..4329011 | hypothetical protein; ROP_40230 | N/A | Click |
| 18 | 4329014..4331728 | PHAGE_Rhodoc_REQ1: primase/polymerase; ROP_40240; phage(gi372450093) | 4e-60 | Click |
| 19 | 4332101..4332310 | hypothetical protein; ROP_40250 | N/A | Click |
| 20 | 4332310..4332651 | PHAGE_Rhodoc_REQ1: hypothetical protein; ROP_40260; phage(gi372450035) | 6e-10 | Click |
| 21 | 4332666..4333034 | PHAGE_Mycoba_Kostya: gp86; ROP_40270; phage(gi194303139) | 5e-32 | Click |
| 22 | 4333037..4333870 | hypothetical protein; ROP_40280 | N/A | Click |
| 23 | 4333867..4334670 | PHAGE_Mycoba_TM4: hypothetical protein TM4_gp75; ROP_40290; phage(gi18496958) | 2e-08 | Click |
| 24 | 4334667..4334867 | hypothetical protein; ROP_40300 | N/A | Click |
| 25 | 4335564..4335869 | PHAGE_Mycoba_Wildcat: gp100; ROP_40310; phage(gi109521537) | 2e-20 | Click |
| 26 | 4336337..4336753 | PHAGE_Mycoba_Faith1: gp2; ROP_40320; phage(gi338827014) | 1e-13 | Click |
| 27 | 4336818..4338143 | PHAGE_Rhodoc_REQ1: terminase large subunit; ROP_40330; phage(gi372450098) | 4e-68 | Click |
| 28 | 4338145..4339482 | PHAGE_Strept_phiHau3: putative portal; ROP_40340; phage(gi410490964) | 1e-64 | Click |
Region 3, total : 31 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 4335275..4335288 | attL CGGCACTGACCAGG | N/A | Click |
| 2 | 4343477..4344403 | PHAGE_Mycoba_LeBron: gp6; ROP_40380; phage(gi304360955) | 1e-30 | Click |
| 3 | 4344517..4345203 | PHAGE_Mycoba_TM4: hypothetical protein TM4_gp8; ROP_40390; phage(gi18496894) | 1e-19 | Click |
| 4 | 4345269..4346408 | PHAGE_Strept_R4: putative major capsid; ROP_40400; phage(gi414089994) | 3e-46 | Click |
| 5 | 4346598..4346921 | PHAGE_Mycoba_LeBron: gp9; ROP_40410; phage(gi304360958) | 2e-05 | Click |
| 6 | 4346921..4347244 | hypothetical protein; ROP_40420 | N/A | Click |
| 7 | 4347244..4347594 | hypothetical protein; ROP_40430 | N/A | Click |
| 8 | 4347587..4348069 | PHAGE_Mycoba_LeBron: gp12; ROP_40440; phage(gi304360961) | 6e-14 | Click |
| 9 | 4348122..4349066 | PHAGE_Gordon_GRU1: main tail protein; ROP_40450; phage(gi359802383) | 1e-13 | Click |
| 10 | 4349174..4349566 | hypothetical protein; ROP_40460 | N/A | Click |
| 11 | 4349605..4350012 | hypothetical protein; ROP_40470 | N/A | Click |
| 12 | 4350032..4354507 | PHAGE_Strept_6: minor tail protein; ROP_40480; phage(gi93007453) | 2e-49 | Click |
| 13 | 4354507..4355430 | PHAGE_Rhodoc_REQ3: minor tail protein; ROP_40490; phage(gi372450020) | 4e-29 | Click |
| 14 | 4355427..4357193 | PHAGE_Rhodoc_RER2: minor tail protein; ROP_40500; phage(gi372449918) | 1e-68 | Click |
| 15 | 4357213..4357875 | hypothetical protein; ROP_40510 | N/A | Click |
| 16 | 4357904..4358392 | PHAGE_Rhodoc_REQ3: hypothetical protein; ROP_40520; phage(gi372450022) | 2e-06 | Click |
| 17 | 4358395..4359483 | PHAGE_Nocard_NBR1: putative lysin; ROP_40530; phage(gi372217620) | 7e-101 | Click |
| 18 | 4359502..4359768 | hypothetical protein; ROP_40540 | N/A | Click |
| 19 | 4359761..4360261 | hypothetical protein; ROP_40550 | N/A | Click |
| 20 | 4360258..4360605 | hypothetical protein; ROP_40560 | N/A | Click |
| 21 | 4360607..4361566 | PHAGE_Synech_S_CBS4: tail fiber protein; ROP_40570; phage(gi374531790) | 3e-16 | Click |
| 22 | 4361823..4362230 | PHAGE_Rhodoc_REQ3: hypothetical protein; ROP_40580; phage(gi372450028) | 2e-13 | Click |
| 23 | 4362308..4362745 | PHAGE_Rhodoc_REQ3: hypothetical protein; ROP_40590; phage(gi372450029) | 3e-46 | Click |
| 24 | 4362750..4363883 | PHAGE_Rhodoc_REQ3: hypothetical protein; ROP_40600; phage(gi372450030) | 9e-13 | Click |
| 25 | complement(4363938..4364306) | hypothetical protein; ROP_40610 | N/A | Click |
| 26 | 4364276..4364289 | attR CGGCACTGACCAGG | N/A | Click |
| 27 | complement(4364346..4365164) | PHAGE_Mycoba_BPs: integrase; ROP_40620; phage(gi189043119) | 5e-78 | Click |
| 28 | complement(4365286..4365459) | hypothetical protein; ROP_40630 | N/A | Click |
| 29 | complement(4365634..4366107) | cadmium-induced protein CadI; ROP_40640 | N/A | Click |
| 30 | 4366201..4366560 | ArsR family transcriptional regulator; ROP_40650 | N/A | Click |
| 31 | complement(4366576..4366995) | hypothetical protein; ROP_40660 | N/A | Click |
| 32 | complement(4367136..4367501) | hypothetical protein; ROP_40670 | N/A | Click |
| 33 | 4367603..4368502 | PHAGE_Burkho_phi1026b: gp58; ROP_40680; phage(gi38707948) | 2e-14 | Click |