Definition | Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 chromosome, complete genome. |
---|---|
Accession | NC_012125 |
Length | 4,833,080 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 37 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 917495..917512 | attL AGGCAACAAAAAACCCAC | N/A | Click |
2 | complement(917587..918513) | PHAGE_Erwini_ENT90: phage integrase family protein; SPC_0869; phage(gi431810942) | 8e-86 | Click |
3 | complement(918531..918653) | hypothetical protein; SPC_0870 | N/A | Click |
4 | complement(918744..920525) | PHAGE_Entero_2: hypothetical protein STM2723.1.Fels2; SPC_0871; phage(gi169936050) | 1e-67 | Click |
5 | complement(920537..920893) | PHAGE_Entero_PsP3: CI; SPC_0872; phage(gi41057393) | 1e-09 | Click |
6 | 921486..921989 | PHAGE_Salmon_RE_2010: regulatory protein; SPC_0873; phage(gi418489686) | 6e-39 | Click |
7 | 921999..922226 | hypothetical protein; SPC_0874 | N/A | Click |
8 | complement(922350..922583) | hypothetical protein; SPC_0875 | N/A | Click |
9 | 922689..923042 | hypothetical protein; SPC_0876 | N/A | Click |
10 | 923110..923340 | hypothetical protein; SPC_0877 | N/A | Click |
11 | 923358..924191 | PHAGE_Entero_2: DNA adenine methylase-like protein; SPC_0878; phage(gi169936055) | 7e-67 | Click |
12 | 924188..926209 | PHAGE_Erwini_ENT90: replication protein A; SPC_0879; phage(gi431810936) | 1e-127 | Click |
13 | 926343..926540 | PHAGE_Salmon_RE_2010: hypothetical protein; SPC_0880; phage(gi418489693) | 3e-06 | Click |
14 | complement(926514..926783) | PHAGE_Vibrio_kappa: hypothetical zinc-finger protein; SPC_0881; phage(gi165970253) | 2e-20 | Click |
15 | complement(926834..927895) | PHAGE_Haemop_HP2: orf15; SPC_0882; phage(gi17981829) | 1e-81 | Click |
16 | complement(927892..929667) | PHAGE_Haemop_HP2: terminase; SPC_0883; phage(gi17981830) | 1e-179 | Click |
17 | complement(929675..929788) | hypothetical protein; SPC_0884 | N/A | Click |
18 | 929828..930631 | PHAGE_Haemop_HP2: scaffold; SPC_0885; phage(gi17981831) | 4e-36 | Click |
19 | 930693..931715 | PHAGE_Aeromo_phiO18P: putative major capsid protein; SPC_0886; phage(gi148727153) | 6e-93 | Click |
20 | 931719..932420 | PHAGE_Aeromo_phiO18P: putative terminase small subunit; SPC_0887; phage(gi148727154) | 1e-54 | Click |
21 | 932481..932969 | PHAGE_Haemop_HP2: packaging protein; SPC_0888; phage(gi17981834) | 4e-25 | Click |
22 | 932966..933472 | PHAGE_Haemop_HP2: orf21; SPC_0889; phage(gi17981835) | 1e-11 | Click |
23 | 934173..935300 | PHAGE_Haemop_HP2: tail sheath; SPC_0891; phage(gi17981837) | 6e-107 | Click |
24 | 935297..935752 | PHAGE_Haemop_HP2: tail tube; SPC_0892; phage(gi17981838) | 4e-42 | Click |
25 | 935762..936055 | PHAGE_Burkho_KS9: holin gp22; SPC_0893; phage(gi255033753) | 1e-17 | Click |
26 | 936052..936393 | PHAGE_Pseudo_PaP2: hypothetical protein PaP2_gp17; SPC_0894; phage(gi48697087) | 7e-26 | Click |
27 | 936393..936725 | PHAGE_Erwini_phiEa104: hypothetical protein; SPC_0895; phage(gi327198401) | 7e-10 | Click |
28 | 936872..937129 | PHAGE_Haemop_HP2: orf26; SPC_0896; phage(gi17981842) | 4e-15 | Click |
29 | 937317..939287 | PHAGE_Haemop_HP2: orf27; SPC_0897; phage(gi17981843) | 3e-78 | Click |
30 | 939284..939613 | PHAGE_Haemop_HP2: orf28; SPC_0898; phage(gi17981844) | 1e-27 | Click |
31 | 939610..940794 | PHAGE_Haemop_HP2: orf29; SPC_0899; phage(gi17981845) | 7e-115 | Click |
32 | 940787..941374 | PHAGE_Haemop_HP2: orf30; SPC_0900; phage(gi17981846) | 2e-46 | Click |
33 | 941384..943399 | PHAGE_Haemop_HP2: tail fibers; SPC_0901; phage(gi17981847) | 7e-70 | Click |
34 | 943362..943541 | PHAGE_Entero_Mu: tail fiber; SPC_0902; phage(gi9633540) | 8e-14 | Click |
35 | 943554..944108 | PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; SPC_0903; phage(gi23505469) | 5e-51 | Click |
36 | 944098..944823 | PHAGE_Haemop_HP2: orf33; SPC_0904; phage(gi17981849) | 8e-13 | Click |
37 | 944795..945340 | PHAGE_Haemop_HP2: orf34; SPC_0905; phage(gi17981850) | 1e-28 | Click |
38 | 945340..947043 | PHAGE_Haemop_HP2: orf35; SPC_0906; phage(gi17981851) | 3e-125 | Click |
39 | 948217..948234 | attR AGGCAACAAAAAACCCAC | N/A | Click |
Region 2, total : 60 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1061094..1061105 | attL GTCGCCACGGCA | N/A | Click |
2 | complement(1061420..1062712) | PHAGE_Gifsy_2: bacteriophage integrase; SPC_1007; phage(gi169257268) | 0.0 | Click |
3 | complement(1062757..1063005) | PHAGE_Gifsy_2: bacteriophage excisionase; SPC_1008; phage(gi169257269) | 1e-43 | Click |
4 | complement(1063046..1063252) | PHAGE_Gifsy_2: hypothetical protein STM1007.Gifsy2; SPC_1009; phage(gi169257270) | 2e-33 | Click |
5 | complement(1063328..1064437) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_1010; phage(gi169257271) | 0.0 | Click |
6 | complement(1064448..1067375) | PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; SPC_1011; phage(gi169257272) | 0.0 | Click |
7 | complement(1067502..1067852) | PHAGE_Gifsy_2: hypothetical protein STM1010.Gifsy2; SPC_1012; phage(gi169257273) | 1e-35 | Click |
8 | 1068443..1068649 | PHAGE_Entero_HK225: hypothetical protein; SPC_1013; phage(gi428782417) | 3e-19 | Click |
9 | complement(1068682..1069614) | PHAGE_Entero_mEpX1: hypothetical protein; SPC_1014; phage(gi428781913) | 4e-91 | Click |
10 | complement(1069611..1069946) | PHAGE_Entero_mEpX1: hypothetical protein; SPC_1015; phage(gi428781914) | 4e-37 | Click |
11 | complement(1070235..1070618) | PHAGE_Entero_mEp237: prophage repressor; SPC_1016; phage(gi435439304) | 5e-60 | Click |
12 | 1071134..1071283 | PHAGE_Gifsy_2: bacteriophage transcriptional activator; Lambda gpCII analog; SPC_1017; phage(gi169257278) | 2e-21 | Click |
13 | 1071375..1072202 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; SPC_1018; phage(gi169257279) | 1e-39 | Click |
14 | 1072289..1072894 | PHAGE_Escher_HK639: replication protein 14; SPC_1019; phage(gi356870655) | 1e-56 | Click |
15 | 1072908..1073705 | PHAGE_Entero_P22: EaA; SPC_1020; phage(gi9635497) | 5e-30 | Click |
16 | 1073804..1074070 | PHAGE_Salmon_SPN3UB: hypothetical protein; SPC_1021; phage(gi423262434) | 1e-46 | Click |
17 | 1074226..1074459 | PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; SPC_1022; phage(gi169257284) | 2e-38 | Click |
18 | 1074708..1074824 | PHAGE_Entero_mEp237: hypothetical protein; SPC_1023; phage(gi435439314) | 2e-15 | Click |
19 | 1074859..1075461 | PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; SPC_1024; phage(gi169257286) | 6e-109 | Click |
20 | 1075461..1075667 | PHAGE_Gifsy_2: hypothetical protein STM1021.1n.Gifsy2; SPC_1025; phage(gi169257287) | 1e-35 | Click |
21 | 1075670..1076281 | PHAGE_Gifsy_2: NinG; SPC_1026; phage(gi169257288) | 1e-113 | Click |
22 | 1076414..1077211 | PHAGE_Gifsy_2: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; SPC_1027; phage(gi169257290) | 1e-153 | Click |
23 | complement(1077757..1078206) | PHAGE_Gifsy_2: hypothetical protein STM1025.Gifsy2; SPC_1028; phage(gi169257293) | 2e-83 | Click |
24 | complement(1078567..1079253) | PHAGE_Gifsy_2: bacteriophage virulence determinant; GtgA; SPC_1029; phage(gi169257294) | 2e-133 | Click |
25 | 1079610..1079858 | PHAGE_Gifsy_2: bacteriophage lysis protein; holin; SPC_1030; phage(gi169257295) | 5e-41 | Click |
26 | 1079830..1080294 | PHAGE_Gifsy_2: bacteriophage lysis protein; endolysin; lysozyme; SPC_1031; phage(gi169257296) | 3e-83 | Click |
27 | 1080291..1080761 | PHAGE_Salmon_SPN3UB: endopeptidase Rz; SPC_1032; phage(gi423262445) | 2e-63 | Click |
28 | 1080979..1081503 | PHAGE_Escher_HK639: rha protein; SPC_1033; phage(gi356870673) | 1e-92 | Click |
29 | 1081566..1082186 | PHAGE_Escher_HK639: terminase small subunit; SPC_1034; phage(gi356870601) | 4e-88 | Click |
30 | 1082197..1083819 | PHAGE_Burkho_BcepB1A: gp33 TerL; SPC_1035; phage(gi48697520) | 2e-155 | Click |
31 | 1083852..1085288 | PHAGE_Vibrio_CP_T1: putative portal protein; SPC_1036; phage(gi418489212) | 3e-42 | Click |
32 | 1085302..1085910 | PHAGE_Xantho_vB_XveM_DIBBI: head morphogenesis protein; SPC_1037; phage(gi389060406) | 9e-15 | Click |
33 | 1085925..1087157 | PHAGE_Edward_MSW_3: putative head protein; SPC_1038; phage(gi448261038) | 6e-19 | Click |
34 | 1087183..1087659 | bacteriophage protein; SPC_1039 | N/A | Click |
35 | 1087671..1088612 | PHAGE_Vibrio_CP_T1: putative major capsid protein; SPC_1040; phage(gi418489228) | 3e-19 | Click |
36 | 1088654..1089022 | bacteriophage protein; SPC_1041 | N/A | Click |
37 | 1088988..1089395 | PHAGE_Pseudo_KPP12: putative structural protein; SPC_1042; phage(gi431811107) | 7e-08 | Click |
38 | 1089392..1089946 | PHAGE_Psychr_pOW20_A: hypothetical protein; SPC_1043; phage(gi472339833) | 3e-10 | Click |
39 | 1090017..1090322 | bacteriophage protein; SPC_1044 | N/A | Click |
40 | 1090297..1090860 | bacteriophage protein; SPC_1045 | N/A | Click |
41 | 1090864..1092009 | PHAGE_Aggreg_S1249: hypothetical protein; SPC_1046; phage(gi273809558) | 7e-40 | Click |
42 | 1092022..1092465 | PHAGE_Entero_WV8: hypothetical protein WV8_gp071; SPC_1047; phage(gi238801803) | 4e-06 | Click |
43 | 1092469..1092921 | bacteriophage protein; SPC_1048 | N/A | Click |
44 | 1093099..1094733 | PHAGE_Aeromo_vB_AsaM_56: putative tail-fiber/lysozyme protein; SPC_1049; phage(gi422937553) | 2e-13 | Click |
45 | 1094733..1095383 | PHAGE_Aggreg_S1249: hypothetical protein; SPC_1050; phage(gi273809554) | 3e-07 | Click |
46 | 1095387..1095689 | PHAGE_Psychr_pOW20_A: hypothetical protein; SPC_1051; phage(gi472339842) | 3e-05 | Click |
47 | 1095692..1096723 | PHAGE_Psychr_pOW20_A: hypothetical protein; SPC_1052; phage(gi472339843) | 3e-22 | Click |
48 | 1096720..1097055 | hypothetical protein; SPC_1053 | N/A | Click |
49 | complement(1097062..1097268) | regulatory protein; SPC_1054 | N/A | Click |
50 | 1097540..1097698 | hypothetical protein; SPC_1055 | N/A | Click |
51 | 1097688..1098335 | PHAGE_Salmon_SPN3UB: hypothetical protein; SPC_1056; phage(gi423262398) | 8e-35 | Click |
52 | 1098400..1099185 | PHAGE_Vibrio_ICP1: putative antirepressor protein; SPC_1057; phage(gi325171055) | 5e-17 | Click |
53 | 1099249..1100004 | PHAGE_Aggreg_S1249: putative baseplate protein; SPC_1058; phage(gi273809550) | 8e-33 | Click |
54 | 1100140..1100493 | PHAGE_Vibrio_CP_T1: hypothetical protein; SPC_1059; phage(gi418489248) | 7e-13 | Click |
55 | 1100506..1101693 | PHAGE_Iodoba_phiPLPE: gp61 putative baseplate protein; SPC_1060; phage(gi197085675) | 1e-40 | Click |
56 | 1101690..1102370 | PHAGE_Haemop_Aaphi23: hypothetical protein Aaphi23p49; SPC_1061; phage(gi31544052) | 2e-12 | Click |
57 | 1102352..1103782 | PHAGE_Entero_2: P2 gpH-like protein; SPC_1062; phage(gi169936027) | 0.0 | Click |
58 | 1103789..1104205 | PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; SPC_1063; phage(gi23505469) | 8e-24 | Click |
59 | complement(1104619..1104771) | hypothetical protein; SPC_1064 | N/A | Click |
60 | complement(1105022..1106488) | PHAGE_Gifsy_1: leucine-rich repeat protein; SPC_1065; phage(gi169257209) | 0.0 | Click |
61 | 1106917..1108716 | PHAGE_Cafete_BV_PW1: putative eIF-2gamma; SPC_1066; phage(gi310831469) | 1e-04 | Click |
62 | 1109848..1109859 | attR GTCGCCACGGCA | N/A | Click |
Region 3, total : 46 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1327042..1327053 | attL TAATCGTTTATT | N/A | Click |
2 | complement(1337107..1337901) | PHAGE_Salmon_epsilon34: EaD-like protein; SPC_1266; phage(gi221328645) | 2e-56 | Click |
3 | complement(1337898..1338299) | hypothetical protein; SPC_1267 | N/A | Click |
4 | complement(1338296..1338529) | hypothetical protein; SPC_1268 | N/A | Click |
5 | complement(1338675..1339076) | PHAGE_Entero_ES18: gp43; SPC_1269; phage(gi62362256) | 4e-21 | Click |
6 | 1339643..1339759 | hypothetical protein; SPC_1270 | N/A | Click |
7 | complement(1339951..1340076) | PHAGE_Salmon_SPN9CC: anti-RecBCD protein 2; SPC_1271; phage(gi389060498) | 5e-17 | Click |
8 | complement(1340262..1340810) | PHAGE_Salmon_epsilon34: putative exodeoxyribonuclease VIII; SPC_1272; phage(gi221328652) | 2e-100 | Click |
9 | complement(1341073..1341300) | PHAGE_Salmon_epsilon34: SSB; Single-strand binding protein; SPC_1273; phage(gi221328653) | 4e-32 | Click |
10 | complement(1341325..1342032) | PHAGE_Entero_IME10: ORF252; SPC_1274; phage(gi422934293) | 2e-132 | Click |
11 | complement(1342162..1342383) | PHAGE_Salmon_vB_SosS_Oslo: Kil protein; SPC_1275; phage(gi399528802) | 8e-33 | Click |
12 | complement(1342331..1342504) | PHAGE_Salmon_vB_SemP_Emek: C3 protein; SPC_1276; phage(gi399498834) | 2e-24 | Click |
13 | complement(1342574..1342801) | PHAGE_Salmon_ST160: Gp17; SPC_1277; phage(gi318065919) | 7e-42 | Click |
14 | complement(1343040..1343240) | PHAGE_Entero_c_1: hypothetical protein; SPC_1278; phage(gi428781779) | 1e-06 | Click |
15 | complement(1344027..1344365) | PHAGE_Salmon_ST160: Gp24; SPC_1279; phage(gi318065922) | 2e-56 | Click |
16 | complement(1344392..1344473) | tRNA | N/A | Click |
17 | 1344899..1345015 | hypothetical protein; SPC_1280 | N/A | Click |
18 | 1345464..1345679 | PHAGE_Entero_HK633: prophage antirepressor; SPC_1281; phage(gi428782568) | 2e-22 | Click |
19 | 1345881..1346078 | PHAGE_Salmon_vB_SosS_Oslo: CII protein; SPC_1282; phage(gi399528815) | 7e-30 | Click |
20 | 1346100..1346243 | hypothetical protein; SPC_1283 | N/A | Click |
21 | 1347049..1348929 | PHAGE_Salmon_epsilon34: DNA replication protein; SPC_1284; phage(gi221328670) | 0.0 | Click |
22 | 1349080..1349208 | PHAGE_Salmon_epsilon34: hypothetical protein epsilon34_gp53; SPC_1285; phage(gi221328671) | 5e-20 | Click |
23 | complement(1349226..1349366) | hypothetical protein; SPC_1286 | N/A | Click |
24 | 1350523..1350651 | PHAGE_Salmon_vB_SemP_Emek: NinF; SPC_1287; phage(gi399498849) | 1e-16 | Click |
25 | 1350907..1351302 | PHAGE_Entero_ST64T: Rus; SPC_1288; phage(gi24371573) | 6e-71 | Click |
26 | 1351329..1351502 | PHAGE_Salmon_vB_SosS_Oslo: NinH protein; SPC_1289; phage(gi399528830) | 1e-28 | Click |
27 | 1351483..1351662 | PHAGE_Salmon_vB_SosS_Oslo: NinZ protein; SPC_1290; phage(gi399528831) | 9e-27 | Click |
28 | 1351986..1352177 | PHAGE_Escher_HK75: antitermination protein Q; SPC_1291; phage(gi356870728) | 1e-30 | Click |
29 | 1352240..1352314 | tRNA | N/A | Click |
30 | 1352320..1352395 | tRNA | N/A | Click |
31 | 1352644..1352961 | PHAGE_Entero_IME10: holin; SPC_1292; phage(gi422934276) | 2e-54 | Click |
32 | 1352948..1353421 | PHAGE_Escher_HK75: lysozyme; SPC_1293; phage(gi356870730) | 1e-87 | Click |
33 | 1353418..1353885 | PHAGE_Salmon_SE1: Gp15; SPC_1294; phage(gi219681237) | 1e-76 | Click |
34 | 1354272..1354784 | PHAGE_Salmon_SPN9CC: hypothetical protein; SPC_1295; phage(gi389060533) | 2e-94 | Click |
35 | 1355227..1355469 | PHAGE_Salmon_vB_SemP_Emek: hypothetical protein; SPC_1296; phage(gi399498861) | 6e-39 | Click |
36 | 1355912..1357390 | PHAGE_Entero_HK620: terminase large subunit; SPC_1297; phage(gi13559866) | 7e-168 | Click |
37 | 1357392..1359590 | PHAGE_Bacter_2: portal protein; SPC_1298; phage(gi212499722) | 0.0 | Click |
38 | 1359681..1360574 | PHAGE_Entero_Sf6: gene 4 protein; SPC_1299; phage(gi41057282) | 9e-29 | Click |
39 | 1360593..1361846 | PHAGE_Entero_P22: coat protein; SPC_1300; phage(gi9635538) | 1e-34 | Click |
40 | 1361900..1362076 | hypothetical protein; SPC_1301 | N/A | Click |
41 | 1362528..1363946 | PHAGE_Entero_IME10: DNA stabilization protein; SPC_1302; phage(gi422934285) | 0.0 | Click |
42 | 1363950..1364588 | PHAGE_Entero_P22: head completion protein; SPC_1303; phage(gi51236728) | 8e-78 | Click |
43 | 1364588..1365043 | PHAGE_Salmon_epsilon34: Virion assembly protein; SPC_1304; phage(gi221328628) | 2e-86 | Click |
44 | 1365046..1365741 | PHAGE_Entero_IME10: DNA transfer protein; SPC_1305; phage(gi422934288) | 2e-116 | Click |
45 | 1365751..1367046 | PHAGE_Entero_IME10: gp20; SPC_1306; phage(gi422934289) | 2e-140 | Click |
46 | 1367046..1369043 | PHAGE_Entero_Sf6: gene 13 protein; SPC_1307; phage(gi41057291) | 0.0 | Click |
47 | complement(1369496..1369744) | PHAGE_Salmon_SPN9CC: regulatory protein; SPC_1308; phage(gi389060549) | 5e-41 | Click |
48 | 1369880..1371631 | PHAGE_Salmon_vB_SemP_Emek: tailspike protein; SPC_1309; phage(gi399498815) | 5e-60 | Click |
49 | complement(1371695..1372948) | PHAGE_Escher_TL_2011b: hypothetical protein; SPC_1310; phage(gi418487678) | 8e-16 | Click |
50 | 1372817..1372828 | attR TAATCGTTTATT | N/A | Click |
51 | complement(1372984..1373103) | PHAGE_Entero_IME10: integrase; SPC_1311; phage(gi422934296) | 1e-10 | Click |
Region 4, total : 14 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1897596..1897607 | attL AAAAGAAAAAAC | N/A | Click |
2 | complement(1899697..1900395) | PHAGE_Cronob_vB_CsaM_GAP32: putative DNA polymerase III epsilon subunit; SPC_1838; phage(gi414087193) | 2e-15 | Click |
3 | complement(1900419..1901075) | hypothetical protein; SPC_1839 | N/A | Click |
4 | complement(1901183..1901413) | PHAGE_Pectob_ZF40: putative DNA polymerase; SPC_1840; phage(gi422936677) | 6e-17 | Click |
5 | 1901545..1901925 | hypothetical protein; SPC_1841 | N/A | Click |
6 | 1901977..1902801 | cation transporter; SPC_1842 | N/A | Click |
7 | 1902818..1903171 | PHAGE_Entero_PsP3: gp28; SPC_1843; phage(gi41057381) | 4e-08 | Click |
8 | 1903478..1903538 | attL TTCTGTATTCCGGTCTTTTTGGTTATATCACATCCAAATCCAGTTTAACATTTCTTTTACA | N/A | Click |
9 | complement(1903545..1904273) | PHAGE_Entero_HK106: integrase; SPC_1844; phage(gi428783305) | 4e-43 | Click |
10 | 1904317..1904511 | hypothetical protein; SPC_1845 | N/A | Click |
11 | 1904591..1904773 | PHAGE_Entero_HK106: tail fiber assembly protein; SPC_1846; phage(gi428783304) | 3e-05 | Click |
12 | 1904861..1905436 | PHAGE_Pseudo_Lu11: putative tail assembly protein; SPC_1847; phage(gi388684690) | 6e-16 | Click |
13 | complement(1905685..1905882) | hypothetical protein; SPC_1848 | N/A | Click |
14 | complement(1906307..1907077) | hypothetical protein; SPC_1849 | N/A | Click |
15 | complement(1907725..1908525) | hypothetical protein; SPC_1850 | N/A | Click |
16 | 1909392..1909452 | attR TTCTGTATTCCGGTCTTTTTGGTTATATCACATCCAAATCCAGTTTAACATTTCTTTTACA | N/A | Click |
17 | complement(1909459..1909728) | PHAGE_Entero_HK106: integrase; SPC_1851; phage(gi428783305) | 2e-13 | Click |
18 | 1924120..1924131 | attR AAAAGAAAAAAC | N/A | Click |
Region 5, total : 11 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1903321..1903332 | attL TTTAGCCTGCAT | N/A | Click |
2 | 1918009..1918176 | PHAGE_Salmon_vB_SosS_Oslo: error-prone lesion bypass DNA polymerase V; SPC_1863; phage(gi399528790) | 2e-08 | Click |
3 | complement(1918611..1918940) | PHAGE_Entero_HK630: integrase; SPC_1864; phage(gi428782814) | 1e-12 | Click |
4 | 1919103..1919435 | PROPHAGE_Escher_CFT073: transposase; SPC_1865; phage(gi26246249) | 7e-38 | Click |
5 | 1919440..1919955 | PROPHAGE_Escher_CFT073: transposase; SPC_1866; phage(gi26246249) | 3e-77 | Click |
6 | 1919955..1920101 | PROPHAGE_Escher_CFT073: transposase; SPC_1867; phage(gi26246249) | 3e-18 | Click |
7 | complement(1920438..1920578) | cytoplasmic protein; SPC_1868 | N/A | Click |
8 | complement(1920744..1921013) | PHAGE_Bacter_2: hypothetical protein APSE233; SPC_1869; phage(gi212499738) | 6e-09 | Click |
9 | 1921060..1921254 | hypothetical protein; SPC_1870 | N/A | Click |
10 | 1921383..1921802 | acetyltransferase; SPC_1871 | N/A | Click |
11 | complement(1922175..1922651) | hypothetical protein; SPC_1872 | N/A | Click |
12 | complement(1922979..1923374) | PHAGE_Entero_HK630: hypothetical protein; SPC_1873; phage(gi428782855) | 4e-19 | Click |
13 | 1924214..1924225 | attR TTTAGCCTGCAT | N/A | Click |
Region 6, total : 53 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2731554..2731745 | PHAGE_Entero_mEp390: DinI-like family protein; SPC_2693; phage(gi428782688) | 6e-25 | Click |
2 | 2732015..2732701 | hypothetical protein; SPC_2694 | N/A | Click |
3 | 2732686..2732985 | hypothetical protein; SPC_2695 | N/A | Click |
4 | 2733054..2733680 | PHAGE_Pseudo_F116: hypothetical protein F116p67; SPC_2696; phage(gi56692976) | 7e-31 | Click |
5 | complement(2733812..2734060) | PHAGE_Stx2_c_1717: transposase; SPC_2697; phage(gi209447153) | 3e-26 | Click |
6 | complement(2734328..2735206) | PHAGE_Gifsy_2: prophage virulence determinant; secreted effector protein; SPC_2698; phage(gi169257322) | 2e-173 | Click |
7 | 2735168..2735181 | attL TGAGCAAAAAAATT | N/A | Click |
8 | complement(2735771..2736352) | PHAGE_Gifsy_2: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; SPC_2699; phage(gi169257321) | 3e-111 | Click |
9 | complement(2736352..2738559) | PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; SPC_2700; phage(gi169257320) | 0.0 | Click |
10 | complement(2738613..2738849) | PHAGE_Gifsy_2: hypothetical protein STM1049.2n.Gifsy2; SPC_2701; phage(gi169257319) | 4e-39 | Click |
11 | complement(2742315..2742857) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpI homolog; SPC_2703; phage(gi169257316) | 4e-97 | Click |
12 | complement(2742917..2743528) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpK homolog; SPC_2704; phage(gi169257315) | 6e-126 | Click |
13 | complement(2743664..2744359) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpL homolog; SPC_2705; phage(gi169257314) | 1e-135 | Click |
14 | 2744677..2744982 | PHAGE_Gifsy_2: bacteriophage virulence determinant; superoxide dismutase precursor; SPC_2706; phage(gi169257313) | 2e-56 | Click |
15 | complement(2745099..2745596) | PHAGE_Gifsy_2: bacteriophage virulence determinant; Lom homolog; SPC_2707; phage(gi169257312) | 3e-93 | Click |
16 | complement(2745695..2746027) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpM homolog; SPC_2708; phage(gi169257311) | 4e-60 | Click |
17 | complement(2746024..2749110) | PHAGE_Gifsy_2: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; SPC_2709; phage(gi169257310) | 0.0 | Click |
18 | complement(2749091..2749354) | PHAGE_Gifsy_2: bacteriophage tail assembly chapterone - part of G+G' frameshift hybrid protein ; Lambda gpT homolog; SPC_2710; phage(gi169257309) | 4e-43 | Click |
19 | complement(2749417..2749815) | PHAGE_Gifsy_2: bacteriophage tail assembly chaperone; Lambda gpG homolog; SPC_2711; phage(gi169257308) | 8e-70 | Click |
20 | complement(2749861..2750610) | PHAGE_Gifsy_2: bacteriophage major tail protein; Lambda gpV homolog; SPC_2712; phage(gi169257307) | 2e-141 | Click |
21 | complement(2750622..2751023) | PHAGE_Gifsy_2: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; SPC_2713; phage(gi169257306) | 3e-71 | Click |
22 | complement(2751020..2751586) | PHAGE_Gifsy_2: bacteriophage morphogenesis protein; Lambda gpZ homolog; SPC_2714; phage(gi169257305) | 6e-103 | Click |
23 | complement(2751567..2751833) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2715; phage(gi169257304) | 2e-45 | Click |
24 | complement(2751859..2752167) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2716; phage(gi169257303) | 7e-51 | Click |
25 | complement(2752273..2754327) | PHAGE_Gifsy_2: bacteriophage Clp protease involved in capsid processing; SPC_2717; phage(gi169257302) | 0.0 | Click |
26 | complement(2754278..2755825) | PHAGE_Gifsy_2: bacteriophage portal protein; SPC_2718; phage(gi169257301) | 0.0 | Click |
27 | complement(2755822..2756028) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2719; phage(gi169257300) | 1e-31 | Click |
28 | complement(2756025..2758058) | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, large subunit; SPC_2720; phage(gi169257299) | 0.0 | Click |
29 | complement(2758120..2758716) | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, small subunit; SPC_2721; phage(gi169257298) | 5e-95 | Click |
30 | complement(2758954..2759361) | PHAGE_Gifsy_2: bacteriophage lysis protein; Lambda gpRz homolog; SPC_2722; phage(gi169257297) | 3e-64 | Click |
31 | complement(2759358..2759822) | PHAGE_Gifsy_2: bacteriophage lysis protein; endolysin; lysozyme; SPC_2723; phage(gi169257296) | 3e-83 | Click |
32 | complement(2759794..2760042) | PHAGE_Gifsy_2: bacteriophage lysis protein; holin; SPC_2724; phage(gi169257295) | 5e-41 | Click |
33 | 2760399..2761085 | PHAGE_Gifsy_2: bacteriophage virulence determinant; GtgA; SPC_2725; phage(gi169257294) | 2e-133 | Click |
34 | complement(2761206..2761847) | PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; SPC_2726; phage(gi169257244) | 2e-95 | Click |
35 | complement(2762020..2762631) | PHAGE_Gifsy_2: NinG; SPC_2727; phage(gi169257288) | 3e-115 | Click |
36 | complement(2762634..2762840) | PHAGE_Gifsy_2: hypothetical protein STM1021.1n.Gifsy2; SPC_2728; phage(gi169257287) | 1e-35 | Click |
37 | complement(2762840..2763442) | PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; SPC_2729; phage(gi169257286) | 2e-110 | Click |
38 | complement(2763777..2764016) | PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; SPC_2730; phage(gi169257284) | 2e-38 | Click |
39 | complement(2764171..2764437) | PHAGE_Salmon_SPN3UB: hypothetical protein; SPC_2731; phage(gi423262434) | 6e-47 | Click |
40 | complement(2764531..2764812) | PHAGE_Entero_ES18: gp37; SPC_2732; phage(gi62362250) | 2e-17 | Click |
41 | complement(2764823..2764957) | hypothetical protein; SPC_2733 | N/A | Click |
42 | complement(2765083..2765346) | PHAGE_Salmon_epsilon34: EaD-like protein; SPC_2734; phage(gi221328645) | 3e-21 | Click |
43 | complement(2765434..2765697) | PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; SPC_2735; phage(gi399528795) | 3e-42 | Click |
44 | complement(2765694..2766011) | PHAGE_Gifsy_2: hypothetical protein STM1016.Gifsy2; SPC_2736; phage(gi169257281) | 1e-46 | Click |
45 | complement(2766052..2766801) | PHAGE_Gifsy_2: bacteriophage DNA replication protein; SPC_2737; phage(gi169257280) | 9e-141 | Click |
46 | complement(2766804..2767787) | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; SPC_2738; phage(gi169257279) | 0.0 | Click |
47 | complement(2767872..2768246) | PHAGE_Gifsy_2: bacteriophage transcriptional activator; Lambda gpCII analog; SPC_2739; phage(gi169257278) | 8e-54 | Click |
48 | 2768578..2768982 | PHAGE_Gifsy_2: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; SPC_2740; phage(gi169257276) | 5e-15 | Click |
49 | 2769573..2769923 | PHAGE_Gifsy_2: hypothetical protein STM1010.Gifsy2; SPC_2741; phage(gi169257273) | 1e-35 | Click |
50 | 2770050..2772977 | PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; SPC_2742; phage(gi169257272) | 0.0 | Click |
51 | 2772988..2774097 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2743; phage(gi169257271) | 0.0 | Click |
52 | 2774173..2774379 | PHAGE_Gifsy_2: hypothetical protein STM1007.Gifsy2; SPC_2744; phage(gi169257270) | 2e-33 | Click |
53 | 2774420..2774704 | PHAGE_Gifsy_1: hypothetical protein STM2635.Gifsy1; SPC_2745; phage(gi169257265) | 8e-52 | Click |
54 | 2774421..2774434 | attR TGAGCAAAAAAATT | N/A | Click |
55 | complement(2774682..2775911) | PHAGE_Gifsy_1: bacteriophage integrase protein; SPC_2746; phage(gi169257266) | 0.0 | Click |
Region 7, total : 44 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 2735168..2735181 | attL TGAGCAAAAAAATT | N/A | Click |
2 | complement(2742315..2742857) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpI homolog; SPC_2703; phage(gi169257316) | 4e-97 | Click |
3 | complement(2742917..2743528) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpK homolog; SPC_2704; phage(gi169257315) | 6e-126 | Click |
4 | complement(2743664..2744359) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpL homolog; SPC_2705; phage(gi169257314) | 1e-135 | Click |
5 | 2744677..2744982 | PHAGE_Gifsy_2: bacteriophage virulence determinant; superoxide dismutase precursor; SPC_2706; phage(gi169257313) | 2e-56 | Click |
6 | complement(2745099..2745596) | PHAGE_Gifsy_2: bacteriophage virulence determinant; Lom homolog; SPC_2707; phage(gi169257312) | 3e-93 | Click |
7 | complement(2745695..2746027) | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpM homolog; SPC_2708; phage(gi169257311) | 4e-60 | Click |
8 | complement(2746024..2749110) | PHAGE_Gifsy_2: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; SPC_2709; phage(gi169257310) | 0.0 | Click |
9 | complement(2749091..2749354) | PHAGE_Gifsy_2: bacteriophage tail assembly chapterone - part of G+G' frameshift hybrid protein ; Lambda gpT homolog; SPC_2710; phage(gi169257309) | 4e-43 | Click |
10 | complement(2749417..2749815) | PHAGE_Gifsy_2: bacteriophage tail assembly chaperone; Lambda gpG homolog; SPC_2711; phage(gi169257308) | 8e-70 | Click |
11 | complement(2749861..2750610) | PHAGE_Gifsy_2: bacteriophage major tail protein; Lambda gpV homolog; SPC_2712; phage(gi169257307) | 2e-141 | Click |
12 | complement(2750622..2751023) | PHAGE_Gifsy_2: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; SPC_2713; phage(gi169257306) | 3e-71 | Click |
13 | complement(2751020..2751586) | PHAGE_Gifsy_2: bacteriophage morphogenesis protein; Lambda gpZ homolog; SPC_2714; phage(gi169257305) | 6e-103 | Click |
14 | complement(2751567..2751833) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2715; phage(gi169257304) | 2e-45 | Click |
15 | complement(2751859..2752167) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2716; phage(gi169257303) | 7e-51 | Click |
16 | complement(2752273..2754327) | PHAGE_Gifsy_2: bacteriophage Clp protease involved in capsid processing; SPC_2717; phage(gi169257302) | 0.0 | Click |
17 | complement(2754278..2755825) | PHAGE_Gifsy_2: bacteriophage portal protein; SPC_2718; phage(gi169257301) | 0.0 | Click |
18 | complement(2755822..2756028) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2719; phage(gi169257300) | 1e-31 | Click |
19 | complement(2756025..2758058) | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, large subunit; SPC_2720; phage(gi169257299) | 0.0 | Click |
20 | complement(2758120..2758716) | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, small subunit; SPC_2721; phage(gi169257298) | 5e-95 | Click |
21 | complement(2758954..2759361) | PHAGE_Gifsy_2: bacteriophage lysis protein; Lambda gpRz homolog; SPC_2722; phage(gi169257297) | 3e-64 | Click |
22 | complement(2759358..2759822) | PHAGE_Gifsy_2: bacteriophage lysis protein; endolysin; lysozyme; SPC_2723; phage(gi169257296) | 3e-83 | Click |
23 | complement(2759794..2760042) | PHAGE_Gifsy_2: bacteriophage lysis protein; holin; SPC_2724; phage(gi169257295) | 5e-41 | Click |
24 | 2760399..2761085 | PHAGE_Gifsy_2: bacteriophage virulence determinant; GtgA; SPC_2725; phage(gi169257294) | 2e-133 | Click |
25 | complement(2761206..2761847) | PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; SPC_2726; phage(gi169257244) | 2e-95 | Click |
26 | complement(2762020..2762631) | PHAGE_Gifsy_2: NinG; SPC_2727; phage(gi169257288) | 3e-115 | Click |
27 | complement(2762634..2762840) | PHAGE_Gifsy_2: hypothetical protein STM1021.1n.Gifsy2; SPC_2728; phage(gi169257287) | 1e-35 | Click |
28 | complement(2762840..2763442) | PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; SPC_2729; phage(gi169257286) | 2e-110 | Click |
29 | complement(2763777..2764016) | PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; SPC_2730; phage(gi169257284) | 2e-38 | Click |
30 | complement(2764171..2764437) | PHAGE_Salmon_SPN3UB: hypothetical protein; SPC_2731; phage(gi423262434) | 6e-47 | Click |
31 | complement(2764531..2764812) | PHAGE_Entero_ES18: gp37; SPC_2732; phage(gi62362250) | 2e-17 | Click |
32 | complement(2764823..2764957) | hypothetical protein; SPC_2733 | N/A | Click |
33 | complement(2765083..2765346) | PHAGE_Salmon_epsilon34: EaD-like protein; SPC_2734; phage(gi221328645) | 3e-21 | Click |
34 | complement(2765434..2765697) | PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; SPC_2735; phage(gi399528795) | 3e-42 | Click |
35 | complement(2765694..2766011) | PHAGE_Gifsy_2: hypothetical protein STM1016.Gifsy2; SPC_2736; phage(gi169257281) | 1e-46 | Click |
36 | complement(2766052..2766801) | PHAGE_Gifsy_2: bacteriophage DNA replication protein; SPC_2737; phage(gi169257280) | 9e-141 | Click |
37 | complement(2766804..2767787) | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; SPC_2738; phage(gi169257279) | 0.0 | Click |
38 | complement(2767872..2768246) | PHAGE_Gifsy_2: bacteriophage transcriptional activator; Lambda gpCII analog; SPC_2739; phage(gi169257278) | 8e-54 | Click |
39 | 2768578..2768982 | PHAGE_Gifsy_2: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; SPC_2740; phage(gi169257276) | 5e-15 | Click |
40 | 2769573..2769923 | PHAGE_Gifsy_2: hypothetical protein STM1010.Gifsy2; SPC_2741; phage(gi169257273) | 1e-35 | Click |
41 | 2770050..2772977 | PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; SPC_2742; phage(gi169257272) | 0.0 | Click |
42 | 2772988..2774097 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SPC_2743; phage(gi169257271) | 0.0 | Click |
43 | 2774173..2774379 | PHAGE_Gifsy_2: hypothetical protein STM1007.Gifsy2; SPC_2744; phage(gi169257270) | 2e-33 | Click |
44 | 2774420..2774704 | PHAGE_Gifsy_1: hypothetical protein STM2635.Gifsy1; SPC_2745; phage(gi169257265) | 8e-52 | Click |
45 | 2774421..2774434 | attR TGAGCAAAAAAATT | N/A | Click |
46 | complement(2774682..2775911) | PHAGE_Gifsy_1: bacteriophage integrase protein; SPC_2746; phage(gi169257266) | 0.0 | Click |
Region 8, total : 25 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(4348029..4348757) | PHAGE_Entero_P1: PmgQ; SPC_4256; phage(gi46401711) | 9e-34 | Click |
2 | complement(4348954..4349304) | inner membrane protein; SPC_4257 | N/A | Click |
3 | complement(4349495..4349950) | PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; SPC_4258; phage(gi418489075) | 2e-24 | Click |
4 | complement(4349947..4350510) | PHAGE_Haemop_Aaphi23: putative tail fiber assembly protein; SPC_4259; phage(gi31544054) | 4e-07 | Click |
5 | complement(4350568..4352226) | PHAGE_Entero_PsP3: gp19; SPC_4260; phage(gi41057371) | 1e-76 | Click |
6 | complement(4352229..4352861) | PHAGE_Burkho_BcepMu: gp51; SPC_4261; phage(gi48696961) | 9e-26 | Click |
7 | complement(4352854..4353969) | PHAGE_Burkho_BcepMu: gp50; SPC_4262; phage(gi48696960) | 3e-105 | Click |
8 | complement(4353960..4354274) | PHAGE_Burkho_BcepMu: gp49; SPC_4263; phage(gi48696959) | 2e-31 | Click |
9 | complement(4354483..4356030) | PHAGE_Salmon_epsilon34: GtrC; putative membrane protein; SPC_4264; phage(gi221328637) | 2e-59 | Click |
10 | complement(4356030..4356959) | PHAGE_Entero_SfV: bactoprenol glucosyltransferase; SPC_4265; phage(gi19549012) | 9e-152 | Click |
11 | complement(4356956..4357318) | PHAGE_Entero_SfV: putative flippase; SPC_4266; phage(gi19549013) | 7e-48 | Click |
12 | complement(4357645..4358367) | PHAGE_Burkho_BcepMu: gp48; SPC_4267; phage(gi48696958) | 1e-39 | Click |
13 | complement(4358377..4359420) | PHAGE_Burkho_BcepMu: gp47; SPC_4268; phage(gi48696957) | 4e-80 | Click |
14 | complement(4359408..4359617) | PHAGE_Burkho_BcepMu: gp46; SPC_4269; phage(gi48696956) | 5e-19 | Click |
15 | complement(4359617..4360570) | PHAGE_Burkho_BcepMu: gp45; SPC_4270; phage(gi48696955) | 7e-46 | Click |
16 | complement(4360570..4362924) | PHAGE_Burkho_BcepMu: gp44; SPC_4271; phage(gi48696954) | 1e-65 | Click |
17 | complement(4363109..4363426) | PHAGE_Burkho_BcepMu: gp41; SPC_4272; phage(gi48696951) | 1e-09 | Click |
18 | complement(4363478..4364002) | PHAGE_Burkho_BcepMu: gp40; SPC_4273; phage(gi48696950) | 1e-68 | Click |
19 | complement(4364002..4365429) | PHAGE_Burkho_BcepMu: gp39; SPC_4274; phage(gi48696949) | 0.0 | Click |
20 | complement(4365419..4365616) | PHAGE_Burkho_BcepMu: gp38; SPC_4275; phage(gi48696948) | 2e-08 | Click |
21 | complement(4365613..4366068) | PHAGE_Burkho_BcepMu: gp37; SPC_4276; phage(gi48696947) | 2e-13 | Click |
22 | complement(4366227..4366481) | PHAGE_Burkho_BcepMu: gp25; SPC_4277; phage(gi48696935) | 2e-15 | Click |
23 | complement(4366554..4367159) | PHAGE_Burkho_BcepMu: gp22; SPC_4278; phage(gi48696932) | 9e-57 | Click |
24 | complement(4367162..4367449) | PHAGE_Burkho_BcepMu: gp21; SPC_4279; phage(gi48696931) | 1e-20 | Click |
25 | 4368024..4368371 | PHAGE_Burkho_BcepMu: gp01; SPC_4280; phage(gi48696911) | 4e-24 | Click |