Definition Campylobacter lari RM2100, complete genome.
Accession NC_012039
Length 1,525,460
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 24 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 789616..789628  attL    ATATTTTTATATT  N/A  Click
2 789967..791145  PROPHAGE_Escher_MG1655: CP4-57 prophage; integrase; Cla_0824; phage(gi16130540)  2e-34  Click
3 complement(791138..791323)  hypothetical protein; Cla_0825  N/A  Click
4 complement(791325..791681)  hypothetical protein; Cla_0826  N/A  Click
5 complement(791697..791903)  hypothetical protein; Cla_0827  N/A  Click
6 complement(791887..792261)  hypothetical protein; Cla_0828  N/A  Click
7 complement(792258..793124)  hypothetical protein; Cla_0829  N/A  Click
8 complement(793145..793303)  hypothetical protein; Cla_0830  N/A  Click
9 complement(793306..793485)  hypothetical protein; Cla_0831  N/A  Click
10 complement(793834..794133)  hypothetical protein; Cla_0832  N/A  Click
11 complement(794134..794412)  hypothetical protein; Cla_0833  N/A  Click
12 794602..794985  conserved hypothetical protein, putative transcriptional regulator; Cla_0834  N/A  Click
13 794988..795293  hypothetical protein; Cla_0835  N/A  Click
14 795294..796673  PHAGE_Vibrio_vB_VpaM_MAR: putative exonuclease; Cla_0836; phage(gi428782757)  1e-08  Click
15 796828..797871  conserved hypothetical protein (DUF450 domain protein); Cla_0837  N/A  Click
16 797896..799719  PHAGE_Cafete_BV_PW1: hypothetical protein; Cla_0838; phage(gi310831167)  4e-06  Click
17 complement(799700..799969)  hypothetical protein; Cla_0839  N/A  Click
18 complement(799836..800225)  hypothetical protein; Cla_0840  N/A  Click
19 complement(800455..800922)  PHAGE_Helico_KHP30: hypothetical protein; Cla_0841; phage(gi431810564)  6e-11  Click
20 complement(800923..802221)  PHAGE_Campyl_NCTC12673: hypothetical protein; putative tail fibre; Cla_0842; phage(gi332672358)  1e-18  Click
21 complement(802222..802593)  PHAGE_Campyl_CPX: hypothetical protein; Cla_0843; phage(gi371670957)  9e-08  Click
22 complement(802574..803071)  hypothetical protein; Cla_0844  N/A  Click
23 complement(803073..803708)  PHAGE_Campyl_CP30A: hypothetical protein; Cla_0845; phage(gi410493107)  3e-45  Click
24 complement(803718..804167)  hypothetical protein; Cla_0846  N/A  Click
25 complement(804169..805761)  PHAGE_Human__8: LANA; Cla_0847; phage(gi139472804)  6e-06  Click
26 814411..814423  attR    ATATTTTTATATT  N/A  Click
Region 2, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1178081..1179466)  PHAGE_Entero_P1: Ban; Cla_1223; phage(gi46401697)  7e-71  Click
2 complement(1179479..1180381)  PHAGE_Lactoc_P087: putative cysteine synthase; Cla_1224; phage(gi229605000)  5e-67  Click
3 complement(1180477..1180779)  PHAGE_Burkho_phiE255: gp35; Cla_1225; phage(gi134288835)  1e-21  Click
4 complement(1180872..1181786)  lipopolysaccharide heptosyltransferase II; Cla_1226  N/A  Click
5 1181835..1182647  PHAGE_Staphy_phiN315: probable ss-1,3-N-acetylglucosaminyltransferase; Cla_1227; phage(gi30043988)  8e-12  Click
6 complement(1182642..1183406)  flagellin modification protein A; Cla_1228  N/A  Click
7 complement(1183406..1184113)  PHAGE_Cafete_BV_PW1: putative bifunctional N-acylneuraminate cytidylyltransferase/demethylmenaquinone methyltransferase; Cla_1229; phage(gi310831255)  4e-05  Click
8 complement(1184106..1184996)  flagellin modification protein PtmF; Cla_1230  N/A  Click
9 complement(1184993..1186030)  PHAGE_Sphing_PAU: gp187; Cla_1231; phage(gi435844690)  2e-07  Click
10 complement(1186041..1186712)  PHAGE_Campyl_CP21: LmbE family protein; Cla_1232; phage(gi422935199)  9e-06  Click
11 complement(1186722..1187615)  PHAGE_Burkho_phiE255: gp30, formyl transferase, putative; Cla_1233; phage(gi134288807)  1e-06  Click
12 complement(1187612..1188784)  PHAGE_Megavi_lba: UDP-N-acetylglucosamine 2-epimerase; Cla_1234; phage(gi448825506)  5e-11  Click
13 complement(1188777..1189781)  flagellin modification protein PtmC, putative N-acetylneuraminic acid synthetase; Cla_1235  N/A  Click
14 complement(1189797..1190687)  PHAGE_Synech_S_SKS1: cyanobacterial phosphoribosylglycinamide formyltransferase; Cla_1236; phage(gi472340960)  1e-11  Click
15 complement(1190724..1191731)  PHAGE_Acanth_moumouvirus: NAD-dependent epimerase/dehydratase; Cla_1237; phage(gi441432391)  9e-30  Click
16 1192633..1192782  PHAGE_Staphy_phiN315: probable ss-1,3-N-acetylglucosaminyltransferase; Cla_1239; phage(gi30043988)  9e-05  Click
17 1192930..1194135  PHAGE_Megavi_chiliensis: putative glycosyltransferase; Cla_1240; phage(gi363540053)  6e-08  Click
18 1194139..1195059  PHAGE_Staphy_phiN315: probable ss-1,3-N-acetylglucosaminyltransferase; Cla_1241; phage(gi30043988)  9e-13  Click
19 complement(1195049..1196218)  PHAGE_Megavi_lba: putative glycosyltransferase; Cla_1242; phage(gi448825509)  4e-06  Click
20 1196278..1197273  glycosyltransferase; Cla_1243  N/A  Click
21 complement(1197276..1198430)  PHAGE_Megavi_lba: putative glycosyltransferase; Cla_1244; phage(gi448825509)  4e-08  Click
22 complement(1198434..1199981)  PHAGE_Microm_MpV1: hypothetical protein; Cla_1245; phage(gi313768241)  5e-09  Click