Definition Agrobacterium vitis S4 chromosome 1, complete genome.
Accession NC_011989
Length 3,726,375
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 730644..730778  PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; Avi_0854; phage(gi17975200)  4e-10  Click
2 complement(731021..731452)  hypothetical protein; Avi_0855  N/A  Click
3 731613..731661  attL    ATTGGCTGGGGAACCTGGATTCGAACCAAGATTAACGGAGTCAGAGTCC  N/A  Click
4 732159..733097  prophage lambdaBa02 DNA replication protein; Avi_0857  N/A  Click
5 733305..734531  PHAGE_Salmon_ST64B: Portal Protein; Avi_0858; phage(gi23505449)  2e-41  Click
6 734925..735476  PHAGE_Salmon_ST64B: Pro-head protease; Avi_0860; phage(gi23505450)  3e-23  Click
7 735478..736689  PHAGE_Salmon_ST64B: Major capsid protein precursor; Avi_0861; phage(gi23505451)  9e-51  Click
8 736724..737110  PHAGE_Azospi_Cd: hypothetical protein APCd_gp34; Avi_0862; phage(gi168495137)  4e-07  Click
9 737113..737475  PHAGE_Bacill_phi105: hypothetical protein phi105_50; Avi_0864; phage(gi22855043)  1e-05  Click
10 737472..737960  PHAGE_Salico_CGphi29: hypothetical protein; Avi_0865; phage(gi472340186)  7e-05  Click
11 737964..738434  hypothetical protein; Avi_0866  N/A  Click
12 738431..738742  PHAGE_Entero_mEp235: head-tail connector II; Avi_0867; phage(gi428781817)  1e-05  Click
13 738744..739661  PHAGE_Strept_6: tail component protein; Avi_0868; phage(gi93007447)  2e-05  Click
14 739658..739969  PHAGE_Entero_mEpX2: hypothetical protein; Avi_0869; phage(gi428765622)  7e-08  Click
15 739966..740403  PHAGE_Burkho_phiE125: putative terminase (small subunit); Avi_0871; phage(gi17975162)  4e-07  Click
16 740384..741976  PHAGE_Burkho_KS9: terminase gp2; Avi_0872; phage(gi255033734)  1e-60  Click
17 741976..744081  PHAGE_Rhodob_RcapNL: phage tail-related protein; Avi_0873; phage(gi461474975)  5e-23  Click
18 744081..744440  hypothetical protein; Avi_0874  N/A  Click
19 744446..745375  PHAGE_Mycoba_Llij: gp100; Avi_0876; phage(gi109392286)  6e-06  Click
20 complement(745830..746129)  hypothetical protein; Avi_0879  N/A  Click
21 complement(746206..746730)  hypothetical protein; Avi_0880  N/A  Click
22 747050..747400  hypothetical protein; Avi_0883  N/A  Click
23 748068..749117  PHAGE_Salmon_ST64B: Integrase protein; Avi_0886; phage(gi23505472)  2e-21  Click
24 749175..749223  attR    ATTGGCTGGGGAACCTGGATTCGAACCAAGATTAACGGAGTCAGAGTCC  N/A  Click
Region 2, total : 18 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1117734..1119113  PHAGE_Strept_6: terminase large subunit; Avi_1330; phage(gi93007440)  1e-56  Click
2 1119497..1120105  PHAGE_Rhizob_3: p029; Avi_1332; phage(gi195546559)  3e-18  Click
3 1120420..1121622  PHAGE_Salmon_ST64B: Portal Protein; Avi_1334; phage(gi23505449)  3e-20  Click
4 1121812..1122129  hypothetical protein; Avi_1335  N/A  Click
5 1122178..1122747  PHAGE_Entero_phiP27: putative prohead protease; Avi_1337; phage(gi18249903)  2e-25  Click
6 1122759..1124021  PHAGE_Salmon_ST64B: Major capsid protein precursor; Avi_1338; phage(gi23505451)  2e-81  Click
7 1124126..1124695  PHAGE_Rhizob_3: p008; Avi_1339; phage(gi195546539)  4e-06  Click
8 1124710..1125033  PHAGE_Salmon_ST64B: hypothetical protein sb9; Avi_1340; phage(gi23505454)  2e-06  Click
9 1125187..1125585  hypothetical protein; Avi_1343  N/A  Click
10 complement(1125575..1126819)  MFS permease; Avi_1344  N/A  Click
11 1127172..1127582  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; Avi_1345; phage(gi461474972)  9e-20  Click
12 1127579..1127998  hypothetical protein; Avi_1346  N/A  Click
13 1128058..1128246  gene transfer agent (GTA) orfg10; Avi_1347  N/A  Click
14 1128257..1128856  PHAGE_Entero_mEpX2: tail length tape measure protein; Avi_1349; phage(gi428765628)  2e-14  Click
15 1128866..1129501  PHAGE_Roseob_1: putative glycoside hydrolase; Avi_1350; phage(gi331028135)  1e-39  Click
16 1129498..1130388  PHAGE_Roseob_1: gene transfer agent; Avi_1351; phage(gi331028136)  1e-51  Click
17 1130363..1130731  PHAGE_Roseob_1: phage cell wall peptidase; Avi_1352; phage(gi331028137)  9e-32  Click
18 1130903..1134694  PHAGE_Roseob_1: gene transfer agent; Avi_1354; phage(gi331028138)  0.0  Click
Region 3, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1612014..1612026  attL    CTTGAGCGGTTGC  N/A  Click
2 complement(1612077..1613108)  PHAGE_Azospi_Cd: integrase; Avi_1951; phage(gi168495175)  3e-14  Click
3 complement(1614155..1615162)  hypothetical protein; Avi_1952  N/A  Click
4 complement(1615576..1616190)  PHAGE_Entero_phiP27: putative lambda repressor; Avi_1954; phage(gi18249875)  2e-08  Click
5 1616745..1617242  hypothetical protein; Avi_1955  N/A  Click
6 1617561..1618121  hypothetical protein; Avi_1959  N/A  Click
7 1618118..1618411  hypothetical protein; Avi_1961  N/A  Click
8 1618408..1619691  PHAGE_Burkho_KS9: replication protein gp46; Avi_1963; phage(gi255033729)  1e-06  Click
9 1619678..1620334  Transcription antiterminator protein; Avi_1964  N/A  Click
10 1621003..1621470  Phage terminase protein; Avi_1966  N/A  Click
11 1621454..1623268  PHAGE_Tetras_SI1: terminase; Avi_1967; phage(gi472342258)  1e-119  Click
12 1623281..1624588  PHAGE_Rhizob_3: p003; Avi_1968; phage(gi195546533)  5e-130  Click
13 1624563..1625159  PHAGE_Rhizob_3: p004; Avi_1969; phage(gi195546534)  5e-38  Click
14 1625195..1626472  PHAGE_Rhizob_3: p005b; Avi_1970; phage(gi195546535)  7e-124  Click
15 1626811..1627359  PHAGE_Rhizob_3: p008; Avi_1973; phage(gi195546539)  9e-23  Click
16 1627890..1628351  PHAGE_Rhizob_3: p011; Avi_1977; phage(gi195546542)  6e-16  Click
17 1628348..1628755  PHAGE_Rhizob_3: p012; Avi_1978; phage(gi195546543)  4e-16  Click
18 1628782..1629225  PHAGE_Rhizob_3: p014; Avi_1979; phage(gi195546545)  1e-11  Click
19 complement(1629965..1630828)  PHAGE_Escher_phAPEC8: putative glucose-1-phosphate thymidylyltransferase; Avi_1983; phage(gi448260372)  2e-92  Click
20 complement(1630906..1631811)  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose reductase; Avi_1984; phage(gi448260370)  7e-36  Click
21 complement(1631808..1632866)  PHAGE_Escher_phAPEC8: putative dTDP-glucose 4,6-dehydratase; Avi_1986; phage(gi448260373)  2e-90  Click
22 complement(1632921..1633484)  PHAGE_Escher_phAPEC8: putative dTDP-4-dehydrorhamnose 3,5-epimerase; Avi_1988; phage(gi448260371)  5e-36  Click
23 complement(1633668..1633850)  endo-polygalacturonase precursor protein; Avi_1989  N/A  Click
24 1633917..1636664  PHAGE_Pseudo_MP38: putative tail component protein; Avi_1990; phage(gi215479964)  3e-36  Click
25 1635285..1635297  attR    CTTGAGCGGTTGC  N/A  Click
Region 4, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1896228..1898243  PHAGE_Synech_S_CBS3: large terminase subunit; Avi_2311; phage(gi331028008)  2e-35  Click
2 1898240..1899877  PHAGE_Provid_Redjac: phage portal protein; Avi_2312; phage(gi410490794)  2e-34  Click
3 1900153..1901073  PHAGE_Salmon_SPN19: putative prohead protease ClpP; Avi_2314; phage(gi414090189)  2e-40  Click
4 1901078..1901671  PHAGE_Roseob_SIO1: gp7; Avi_2316; phage(gi9964615)  8e-05  Click
5 1901675..1902037  hypothetical protein; Avi_2317  N/A  Click
6 1902049..1903065  PHAGE_Entero_01: major capsid protein; Avi_2319; phage(gi38707831)  1e-19  Click
7 1903143..1903622  PHAGE_Helico_2: hypothetical protein; Avi_2321; phage(gi370703036)  2e-16  Click
8 1903626..1903997  hypothetical protein; Avi_2322  N/A  Click
9 1904782..1905324  PHAGE_Burkho_KL3: gp27; Avi_2324; phage(gi327198072)  7e-10  Click
10 1905321..1905716  PHAGE_Burkho_KL3: gp26; Avi_2326; phage(gi327198071)  6e-06  Click
11 1905720..1906577  PHAGE_Erwini_ENT90: baseplate assembly protein; Avi_2327; phage(gi431810943)  1e-28  Click
12 1906574..1907707  Phage protein gp27; Avi_2328  N/A  Click
13 1907720..1910929  PHAGE_Bacill_Bastille: putative tail fiber; Avi_2330; phage(gi410492146)  2e-60  Click
14 1910939..1912096  PHAGE_Ralsto_RSL1: unnamed protein product; Avi_2331; phage(gi189426961)  2e-27  Click
15 1912417..1913679  PHAGE_Burkho_KL3: gp21; Avi_2334; phage(gi327198066)  2e-19  Click
16 1913706..1914239  phage major tail tube protein; Avi_2335  N/A  Click
Region 5, total : 33 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2495825..2499160)  PHAGE_Rhodov_RS1: tail fiber protein; Avi_2984; phage(gi472342928)  0.0  Click
2 complement(2499157..2499576)  PHAGE_Rhodov_RS1: tail assembly protein; Avi_2985; phage(gi472342927)  2e-28  Click
3 complement(2500260..2500682)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_2988; phage(gi472342925)  2e-39  Click
4 complement(2500679..2504485)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_2989; phage(gi472342924)  1e-74  Click
5 complement(2504482..2504841)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_2990; phage(gi472342923)  3e-07  Click
6 2505018..2505308  hypothetical protein; Avi_2992  N/A  Click
7 complement(2505323..2506249)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_2995; phage(gi472342921)  5e-48  Click
8 complement(2506419..2506835)  hypothetical protein; Avi_2996  N/A  Click
9 complement(2506832..2507407)  PHAGE_Rhodob_RcapMu: virion morphogenesis protein; Avi_2997; phage(gi356870876)  2e-17  Click
10 complement(2507409..2507846)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_2998; phage(gi472342918)  6e-18  Click
11 complement(2507858..2508199)  hypothetical protein; Avi_3000  N/A  Click
12 complement(2508307..2509203)  PHAGE_Rhodov_RS1: major head protein; Avi_3001; phage(gi472342916)  3e-92  Click
13 complement(2509216..2509623)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3002; phage(gi472342915)  2e-28  Click
14 complement(2509620..2510591)  PHAGE_Haemop_SuMu: bacteriophage Mu I protein gp32; Avi_3003; phage(gi418489085)  3e-38  Click
15 complement(2511068..2512363)  PHAGE_Entero_Mu: virion morphogenesis late F orf; Avi_3005; phage(gi9633521)  3e-43  Click
16 complement(2512360..2513913)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3006; phage(gi472342908)  5e-113  Click
17 complement(2513913..2515556)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3008; phage(gi472342906)  0.0  Click
18 complement(2515553..2516137)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3009; phage(gi472342904)  9e-46  Click
19 complement(2516140..2516457)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3010; phage(gi472342903)  3e-17  Click
20 complement(2516438..2516821)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3011; phage(gi472342902)  2e-07  Click
21 complement(2516818..2517129)  PHAGE_Burkho_KS10: hypothetical protein KS10_gp07; Avi_3012; phage(gi198449269)  4e-11  Click
22 2517213..2517590  hypothetical protein; Avi_3013  N/A  Click
23 complement(2518026..2518532)  PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; Avi_3017; phage(gi331028115)  1e-09  Click
24 complement(2518634..2518993)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3018; phage(gi472342899)  2e-15  Click
25 2519127..2519456  hypothetical protein; Avi_3019  N/A  Click
26 2519467..2520090  hypothetical protein; Avi_3023  N/A  Click
27 complement(2520041..2520688)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3025; phage(gi472342895)  4e-45  Click
28 complement(2520685..2520975)  PHAGE_Pseudo_MP38: host nuclease inhibitor protein; Avi_3027; phage(gi215479937)  4e-06  Click
29 complement(2521932..2522585)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3030; phage(gi472342890)  9e-64  Click
30 complement(2523430..2524461)  PHAGE_Haemop_SuMu: phage transposase; Avi_3033; phage(gi418489040)  2e-08  Click
31 complement(2524499..2526571)  PHAGE_Entero_Mu: transposase; Avi_3035; phage(gi9633496)  7e-84  Click
32 complement(2526771..2527232)  PHAGE_Pseudo_MP42: hypothetical protein; Avi_3037; phage(gi399528582)  8e-08  Click
33 complement(2527229..2528056)  PHAGE_Rhodob_RcapMu: ParB-like nuclease; Avi_3038; phage(gi356870851)  8e-21  Click
Region 6, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2533365..2534882  PROPHAGE_Escher_CFT073: transposase; Avi_3044; phage(gi26248360)  1e-16  Click
2 2534872..2535666  PROPHAGE_Escher_CFT073: transposase/IS protein; Avi_3045; phage(gi26248359)  2e-31  Click
3 complement(2536851..2538404)  PHAGE_Pseudo_MP29: portal protein; Avi_3047; phage(gi215480002)  1e-84  Click
4 complement(2538404..2539762)  PHAGE_Entero_Mu: putative portal protein; Avi_3048; phage(gi9633519)  3e-14  Click
5 complement(2539759..2540358)  PHAGE_Entero_Mu: hypothetical protein Mup27; Avi_3049; phage(gi9633518)  1e-05  Click
6 complement(2540659..2541042)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3052; phage(gi472342902)  3e-07  Click
7 complement(2541039..2541257)  PHAGE_Burkho_KS10: hypothetical protein KS10_gp07; Avi_3053; phage(gi198449269)  2e-10  Click
8 complement(2541452..2541805)  hypothetical protein; Avi_3055  N/A  Click
9 complement(2541802..2542074)  NAD(P)+ transhydrogenase beta chain; Avi_3056  N/A  Click
10 complement(2542247..2542786)  PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; Avi_3058; phage(gi331028115)  4e-09  Click
11 complement(2543206..2543859)  PHAGE_Entero_Mu: hypothetical protein Mup16; Avi_3060; phage(gi9633506)  2e-09  Click
12 complement(2544104..2544757)  PHAGE_Rhodov_RS1: hypothetical protein; Avi_3062; phage(gi472342890)  2e-73  Click
13 2545274..2545495  hypothetical protein; Avi_3065  N/A  Click
14 complement(2545647..2546690)  PHAGE_Entero_Mu: DNA transposition protein; Avi_3067; phage(gi9633513)  2e-33  Click
15 complement(2546728..2548794)  PHAGE_Entero_Mu: transposase; Avi_3068; phage(gi9633496)  4e-86  Click
16 complement(2548791..2549255)  PHAGE_Pseudo_MP42: hypothetical protein; Avi_3069; phage(gi399528582)  3e-09  Click
17 complement(2550108..2550458)  hypothetical genomic island protein; Avi_3073  N/A  Click
18 complement(2550909..2551268)  hypothetical protein; Avi_3074  N/A  Click
19 complement(2551299..2551637)  PHAGE_Entero_Mu: DNA binding protein ner; Avi_3075; phage(gi9633495)  9e-05  Click