Definition Rhodobacter sphaeroides KD131 chromosome chromosome 1, complete sequence.
Accession NC_011963
Length 3,152,792
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(344279..345763)  PHAGE_Salini_CW02: putative tail fiber; RSKD131_0354; phage(gi423261944)  2e-06  Click
2 complement(345779..346669)  PHAGE_Salico_CGphi29: hypothetical protein; RSKD131_0355; phage(gi472340191)  5e-22  Click
3 complement(346669..351567)  PHAGE_Pseudo_vB_PaeS_PMG1: tail tape measure protein; RSKD131_0356; phage(gi374531664)  2e-56  Click
4 complement(351672..351917)  hypothetical protein; RSKD131_0357  N/A  Click
5 complement(351992..352384)  hypothetical protein; RSKD131_0358  N/A  Click
6 complement(352381..352824)  PHAGE_Strept_phiSASD1: gp14; RSKD131_0359; phage(gi298103499)  1e-07  Click
7 complement(352834..353214)  PHAGE_Tetras_SI1: hypothetical protein; RSKD131_0360; phage(gi472342242)  8e-05  Click
8 complement(353219..353386)  hypothetical protein; RSKD131_0361  N/A  Click
9 complement(353383..353856)  PHAGE_Tetras_SI1: hypothetical protein; RSKD131_0362; phage(gi472342243)  2e-11  Click
10 complement(353853..354158)  PHAGE_Rhodob_RcapNL: phage head-tail adapter protein; RSKD131_0363; phage(gi461474968)  2e-06  Click
11 complement(354182..354688)  hypothetical protein; RSKD131_0364  N/A  Click
12 complement(354693..354977)  PHAGE_Helico_2: hypothetical protein; RSKD131_0365; phage(gi370703002)  6e-05  Click
13 complement(355073..356398)  PHAGE_Rhodob_RcapNL: HK97 family major capsid protein; RSKD131_0366; phage(gi461474964)  7e-51  Click
14 356653..357396  transmembrane protein; RSKD131_0367  N/A  Click
15 complement(357407..358321)  PHAGE_Rhodob_RcapNL: peptidase S49; RSKD131_0368; phage(gi461474963)  3e-30  Click
16 complement(358318..359553)  PHAGE_Xantho_CP1: putative head portal protein; RSKD131_0369; phage(gi431811001)  8e-29  Click
Region 2, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 346205..346219  attL    GGTGAAGGCGAACTC  N/A  Click
2 complement(360858..362516)  PHAGE_Burkho_KS9: terminase gp2; RSKD131_0372; phage(gi255033734)  1e-84  Click
3 complement(362503..362940)  PHAGE_Mycoba_Porky: gp5; RSKD131_0373; phage(gi194303301)  9e-08  Click
4 complement(363203..363616)  PHAGE_Bacill_phi105: hypothetical protein phi105_50; RSKD131_0374; phage(gi22855043)  3e-23  Click
5 complement(363721..364260)  hypothetical protein; RSKD131_0375  N/A  Click
6 complement(364466..365044)  hypothetical protein; RSKD131_0376  N/A  Click
7 complement(365248..365904)  PHAGE_Pseudo_phi297: putative DNA replication protein O; RSKD131_0377; phage(gi374531278)  6e-11  Click
8 complement(365944..366495)  PHAGE_Rhodob_RcapNL: hypothetical protein; RSKD131_0378; phage(gi461475017)  4e-25  Click
9 complement(366492..366770)  hypothetical protein; RSKD131_0379  N/A  Click
10 complement(366767..366979)  hypothetical protein; RSKD131_0380  N/A  Click
11 complement(367096..367308)  hypothetical protein; RSKD131_0381  N/A  Click
12 368009..368218  hypothetical protein; RSKD131_0382  N/A  Click
13 368215..368547  hypothetical protein; RSKD131_0383  N/A  Click
14 368547..368942  PHAGE_Loktan_pCB2051_A: hypothetical protein; RSKD131_0384; phage(gi472341435)  5e-22  Click
15 369065..370876  PHAGE_Salmon_E1: phage-related DNA-binding protein; RSKD131_0385; phage(gi170676297)  6e-06  Click
16 371039..371182  PHAGE_Rhodob_RcapNL: hypothetical protein; RSKD131_0386; phage(gi461474992)  1e-07  Click
17 371140..371154  attR    GGTGAAGGCGAACTC  N/A  Click
18 371266..372207  PHAGE_Rhodob_RcapNL: phage integrase/recombinase; RSKD131_0387; phage(gi461474991)  1e-68  Click
19 complement(372241..372317)  tRNA  N/A  Click
20 complement(372361..372831)  GCN5-like N-acetyltransferase; RSKD131_0388  N/A  Click
21 complement(373147..373422)  ETC complex I subunit conserved region; RSKD131_0389  N/A  Click
22 complement(373549..373722)  UvrB protein; RSKD131_0390  N/A  Click
23 373714..375897  PHAGE_Acidia_filamentous_virus_9: putative helicase; RSKD131_0391; phage(gi171473669)  1e-07  Click
Region 3, total : 19 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 788173..789471  PHAGE_Strept_mu1_6: terminase large subunit; RSKD131_0782; phage(gi93007440)  4e-64  Click
2 789538..790719  PHAGE_Marino_P12026: phage portal protein, HK97 family; RSKD131_0783; phage(gi399528319)  3e-19  Click
3 790721..790954  hypothetical protein; RSKD131_0784  N/A  Click
4 790965..791522  PHAGE_Tetras_SI1: phage prohead protease; RSKD131_0785; phage(gi472342256)  1e-25  Click
5 791588..792784  PHAGE_Salmon_ST64B: Major capsid protein precursor; RSKD131_0786; phage(gi23505451)  2e-67  Click
6 792880..793479  PHAGE_Rhizob_16_3: p008; RSKD131_0787; phage(gi195546539)  2e-05  Click
7 793479..793814  Phage head-tail adaptor; RSKD131_0788  N/A  Click
8 793811..794209  hypothetical protein; RSKD131_0789  N/A  Click
9 794247..794660  PHAGE_Rhodob_RcapNL: gene transfer aget (GTA) orfg9-like phage major tail protein; RSKD131_0790; phage(gi461474972)  9e-20  Click
10 794660..794977  hypothetical protein; RSKD131_0791  N/A  Click
11 794979..795179  hypothetical protein; RSKD131_0792  N/A  Click
12 795172..795822  PHAGE_Vibrio_vB_VpaS_MAR10: tail tape measure protein; RSKD131_0793; phage(gi428782128)  2e-13  Click
13 795823..796464  PHAGE_Roseob_1: putative glycoside hydrolase; RSKD131_0794; phage(gi331028135)  7e-45  Click
14 796464..797348  PHAGE_Tetras_SI1: hypothetical protein; RSKD131_0795; phage(gi472342235)  5e-28  Click
15 797345..797785  PHAGE_Rhodob_RcapMu: putative tail assembly protein; RSKD131_0796; phage(gi356870891)  6e-05  Click
16 797785..801675  PHAGE_Tetras_SI1: hypothetical protein; RSKD131_0797; phage(gi472342233)  3e-33  Click
17 802115..802891  Serine O-acetyltransferase; RSKD131_0798  N/A  Click
18 complement(802991..804319)  PHAGE_Equid_herpesvirus_4: large tegument protein; RSKD131_0799; phage(gi9629749)  5e-08  Click
19 complement(804330..805703)  PHAGE_Synech_S_SM2: transketolase central region-containing protein; RSKD131_0800; phage(gi326781943)  1e-10  Click
Region 4, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1486529..1488019  PHAGE_Lactob_KC5a: putative minor tail protein; RSKD131_1451; phage(gi90592623)  3e-05  Click
2 complement(1488324..1488713)  hypothetical protein; RSKD131_1452  N/A  Click
3 1488705..1488824  hypothetical protein; RSKD131_1453  N/A  Click
4 1489255..1489267  attL    AGGCCGCCCCGCC  N/A  Click
5 complement(1489302..1489375)  tRNA  N/A  Click
6 complement(1489886..1489999)  hypothetical protein; RSKD131_1454  N/A  Click
7 1490367..1490378  attL    GCGCCGGGTTTG  N/A  Click
8 1490414..1490737  PHAGE_Entero_BP_4795: putative transposase OrfA protein of IS629; RSKD131_1455; phage(gi157166066)  3e-28  Click
9 1490734..1491642  PHAGE_Entero_BP_4795: putative transposase OrfB protein of IS629; RSKD131_1456; phage(gi157166067)  5e-97  Click
10 1491932..1492072  hypothetical protein; RSKD131_1457  N/A  Click
11 1493206..1493433  IS3 family transposase orfA; RSKD131_1458  N/A  Click
12 1493475..1493609  Integrase catalytic subunit; RSKD131_1459  N/A  Click
13 1493613..1493624  attR    GCGCCGGGTTTG  N/A  Click
14 complement(1493646..1494494)  PHAGE_Entero_BP_4795: putative transposase OrfB protein of IS629; RSKD131_1460; phage(gi157166067)  5e-93  Click
15 complement(1494551..1494841)  PHAGE_Entero_BP_4795: putative transposase OrfA protein of IS629; RSKD131_1461; phage(gi157166066)  7e-25  Click
16 1507685..1507697  attR    AGGCCGCCCCGCC  N/A  Click
Region 5, total : 11 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1497699..1498508)  PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; RSKD131_1466; phage(gi331028115)  4e-63  Click
2 complement(1498563..1498757)  PHAGE_Burkho_phiE125: DNA adenine methylase; RSKD131_1467; phage(gi17975188)  2e-05  Click
3 complement(1498821..1500482)  PHAGE_Stx2_converting_1717: transposase; RSKD131_1468; phage(gi209447153)  2e-72  Click
4 complement(1500628..1500906)  PHAGE_Stx2_converting_1717: transposase; RSKD131_1469; phage(gi209447152)  5e-21  Click
5 complement(1500924..1501271)  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; RSKD131_1470; phage(gi17546153)  6e-05  Click
6 complement(1501322..1502023)  PHAGE_Rhizob_RR1_B: adenine specific DNA methyltransferase; RSKD131_1471; phage(gi514231187)  4e-67  Click
7 complement(1502913..1503230)  PHAGE_Rhodob_RcapNL: hypothetical protein; RSKD131_1472; phage(gi461474983)  4e-26  Click
8 complement(1503361..1503675)  hypothetical protein; RSKD131_1473  N/A  Click
9 complement(1503700..1504017)  PHAGE_Pseudo_MP42: hypothetical protein; RSKD131_1474; phage(gi399528628)  2e-05  Click
10 complement(1504024..1505508)  PHAGE_Salini_CW02: putative tail fiber; RSKD131_1475; phage(gi423261944)  1e-06  Click
11 complement(1505524..1505856)  PHAGE_Salico_CGphi29: hypothetical protein; RSKD131_1476; phage(gi472340191)  6e-05  Click
Region 6, total : 23 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(3085015..3085620)  PHAGE_Rhizob_RR1_A: hypothetical protein; RSKD131_3022; phage(gi514231499)  5e-05  Click
2 complement(3085627..3086250)  PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp61; RSKD131_3023; phage(gi331028115)  1e-63  Click
3 complement(3086287..3086436)  hypothetical protein; RSKD131_3024  N/A  Click
4 complement(3086491..3087270)  PHAGE_Rhizob_RR1_B: adenine specific DNA methyltransferase; RSKD131_3025; phage(gi514231187)  1e-75  Click
5 complement(3088367..3088684)  PHAGE_Rhodob_RcapNL: hypothetical protein; RSKD131_3026; phage(gi461474983)  3e-26  Click
6 complement(3088920..3089234)  hypothetical protein; RSKD131_3027  N/A  Click
7 complement(3089259..3089576)  PHAGE_Pseudo_MP42: hypothetical protein; RSKD131_3028; phage(gi399528628)  3e-05  Click
8 complement(3089583..3091067)  PHAGE_Salini_CW02: putative tail fiber; RSKD131_3029; phage(gi423261944)  1e-06  Click
9 complement(3091083..3091973)  PHAGE_Salico_CGphi29: hypothetical protein; RSKD131_3030; phage(gi472340191)  2e-21  Click
10 complement(3091973..3092791)  PHAGE_Rhodob_RcapMu: tape measure protein; RSKD131_3031; phage(gi356870888)  3e-11  Click
11 complement(3092788..3096945)  PHAGE_Pseudo_vB_PaeS_PMG1: tail tape measure protein; RSKD131_3032; phage(gi374531664)  4e-61  Click
12 complement(3097021..3097179)  hypothetical protein; RSKD131_3033  N/A  Click
13 complement(3097341..3097733)  hypothetical protein; RSKD131_3034  N/A  Click
14 complement(3097730..3098170)  PHAGE_Strept_phiSASD1: gp14; RSKD131_3035; phage(gi298103499)  7e-08  Click
15 complement(3098180..3098560)  PHAGE_Tetras_SI1: hypothetical protein; RSKD131_3036; phage(gi472342242)  6e-05  Click
16 complement(3098564..3099034)  PHAGE_Tetras_SI1: hypothetical protein; RSKD131_3037; phage(gi472342243)  1e-11  Click
17 complement(3099031..3099336)  PHAGE_Rhodob_RcapNL: phage head-tail adapter protein; RSKD131_3038; phage(gi461474968)  2e-06  Click
18 complement(3099360..3099866)  hypothetical protein; RSKD131_3039  N/A  Click
19 complement(3099871..3100167)  hypothetical protein; RSKD131_3040  N/A  Click
20 complement(3100265..3101590)  PHAGE_Rhodob_RcapNL: HK97 family major capsid protein; RSKD131_3041; phage(gi461474964)  1e-50  Click
21 complement(3101941..3102063)  hypothetical protein; RSKD131_3042  N/A  Click
22 complement(3102670..3103587)  PHAGE_Rhodob_RcapNL: peptidase S49; RSKD131_3043; phage(gi461474963)  3e-30  Click
23 complement(3103584..3104786)  PHAGE_Xantho_CP1: putative head portal protein; RSKD131_3044; phage(gi431811001)  1e-28  Click