Definition Haemophilus parasuis SH0165 chromosome, complete genome.
Accession NC_011852
Length 2,269,156
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 91 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 579397..580212  PHAGE_Mannhe_phiMHaA1: capsid scaffolding protein O; HAPS_0536; phage(gi109289939)  2e-68  Click
2 580428..581081  PHAGE_Mannhe_phiMHaA1: terminase small subunit; HAPS_0538; phage(gi109289941)  5e-46  Click
3 581237..581761  PHAGE_Mannhe_phiMHaA1: endolysin; HAPS_0540; phage(gi109289945)  1e-43  Click
4 581746..582213  PHAGE_Mannhe_phiMHaA1: hypothetical bacteriophage protein; HAPS_0541; phage(gi109289946)  1e-25  Click
5 582396..582914  putative Lhr family helicase, phage associatd; HAPS_0542  N/A  Click
6 583120..583338  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p11; HAPS_0543; phage(gi109289947)  8e-25  Click
7 583335..583769  PHAGE_Mannhe_phiMHaA1: tail completion protein R; HAPS_0544; phage(gi109289948)  8e-41  Click
8 583810..584271  PHAGE_Mannhe_phiMHaA1: tail synthesis protein S; HAPS_0545; phage(gi109289949)  8e-47  Click
9 complement(584367..584552)  hypothetical protein; HAPS_0546  N/A  Click
10 584682..587423  PHAGE_Mannhe_phiMHaA1: tail protein T; putative; phage tail length determinator; HAPS_0547(gi109289951)  5e-77  Click
11 587550..588092  hypothetical protein; HAPS_0548  N/A  Click
12 588085..588507  hypothetical protein; HAPS_0549  N/A  Click
13 588682..588801  hypothetical protein; HAPS_0550  N/A  Click
14 589897..589914  attL    GCAAATGGATAAATTTTC  N/A  Click
15 590265..590450  YcfA family protein; HAPS_0552  N/A  Click
16 590480..590917  PHAGE_Haemop_HP2: hypothetical protein HP2p14; HAPS_0553; phage(gi17981828)  2e-12  Click
17 complement(590939..591316)  PHAGE_Haemop_Aaphi23: putative anti-termination protein Q; HAPS_0554; phage(gi31544020)  1e-09  Click
18 complement(591313..591882)  PHAGE_Aggreg_S1249: NinG recombination protein; HAPS_0555; phage(gi273809581)  3e-58  Click
19 complement(592027..592476)  PHAGE_Aggreg_S1249: putative recombination protein NinB; HAPS_0556; phage(gi273809585)  1e-44  Click
20 complement(592711..593382)  PHAGE_Aggreg_S1249: possible bacteriophage replication protein P; HAPS_0557; phage(gi273809587)  5e-41  Click
21 complement(593382..594212)  PHAGE_Haemop_Aaphi23: putative DNA replication protein O; HAPS_0558; phage(gi31544014)  2e-40  Click
22 complement(594209..594991)  PHAGE_Pseudo_F10: Putative DNA-binding protein (Roi); HAPS_0559; phage(gi148912814)  2e-37  Click
23 complement(595271..595477)  PHAGE_Stx2_c_II: Cro protein; HAPS_0560; phage(gi302393139)  2e-11  Click
24 595739..596266  PHAGE_Stx2_c_II: CI protein; HAPS_0561; phage(gi302393138)  3e-14  Click
25 596299..596733  hypothetical protein; HAPS_0562  N/A  Click
26 596726..597202  hypothetical protein; HAPS_0563  N/A  Click
27 597320..597502  YcfA family protein; HAPS_0564  N/A  Click
28 597542..597961  PHAGE_Yersin_PY54: hypothetical protein PY54p57; HAPS_0565; phage(gi33770566)  4e-28  Click
29 598384..598539  hypothetical protein; HAPS_0566  N/A  Click
30 598817..599104  hypothetical protein; HAPS_0567  N/A  Click
31 complement(599131..599301)  hypothetical protein; HAPS_0568  N/A  Click
32 599316..599537  orfG, econed on plasmid pRF1; HAPS_0569  N/A  Click
33 complement(599674..599802)  hypothetical protein; HAPS_0570  N/A  Click
34 599879..600520  hypothetical protein; HAPS_0571  N/A  Click
35 600597..600725  hypothetical protein; HAPS_0572  N/A  Click
36 600730..601443  PHAGE_Cronob_phiES15: putative serine/threonine phosphatase; HAPS_0573; phage(gi401817585)  3e-54  Click
37 601989..602309  hypothetical protein; HAPS_0575  N/A  Click
38 602306..602845  hypothetical protein; HAPS_0576  N/A  Click
39 602832..603038  hypothetical protein; HAPS_0577  N/A  Click
40 603035..603973  PHAGE_Psychr_pOW20_A: recombinase; HAPS_0578; phage(gi472339794)  1e-58  Click
41 604027..604695  PHAGE_Psychr_pOW20_A: hypothetical protein; HAPS_0579; phage(gi472339793)  3e-34  Click
42 604695..605174  PHAGE_Xantho_vB_XveM_DIBBI: single-stranded DNA-binding protein; HAPS_0580; phage(gi389060431)  6e-43  Click
43 complement(605220..605408)  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p49; HAPS_0581; phage(gi109289984)  5e-16  Click
44 605755..606672  PHAGE_Strept_Sfi19: hypothetical protein Sfi19p28; HAPS_0582; phage(gi9632919)  8e-49  Click
45 606696..606959  hypothetical protein; HAPS_0583  N/A  Click
46 complement(607103..607321)  PHAGE_Mannhe_phiMHaA1: hypothetical protein MhaA1p49; HAPS_0584; phage(gi109289984)  3e-08  Click
47 complement(607748..608044)  hypothetical protein; HAPS_0585  N/A  Click
48 complement(608153..609130)  hypothetical protein; HAPS_0586  N/A  Click
49 complement(609187..614070)  PHAGE_Salmon_1: putative bacteriophage host-specificity protein; Lambda gpJ homolog; HAPS_0587; phage(gi169257203)  1e-153  Click
50 complement(614189..615034)  PHAGE_Haemop_Aaphi23: putative antirepressor protein Ant; HAPS_0588; phage(gi31544021)  1e-67  Click
51 complement(615298..615483)  hypothetical protein; HAPS_0589  N/A  Click
52 complement(615597..616115)  PHAGE_Entero_cdtI: putative tail component; HAPS_0590; phage(gi148609399)  5e-22  Click
53 complement(616145..616897)  PHAGE_Entero_4795: putative tail fiber component; HAPS_0591; phage(gi157166055)  3e-60  Click
54 complement(616899..617636)  PHAGE_Salmon_1: putative bacteriophage minor tail protein; Lambda gpL homolog; HAPS_0592; phage(gi169257199)  3e-58  Click
55 complement(617636..617968)  PHAGE_Entero_mEp460: minor tail protein; HAPS_0593; phage(gi428782330)  2e-14  Click
56 complement(618013..621387)  PHAGE_Acinet_Bphi_B1251: tail tape measure protein; HAPS_0594; phage(gi423262023)  1e-61  Click
57 complement(621443..621718)  hypothetical protein; HAPS_0595  N/A  Click
58 complement(621920..622186)  hypothetical protein; HAPS_0596  N/A  Click
59 complement(622270..622539)  addiction module antitoxin; HAPS_0597  N/A  Click
60 complement(622543..622809)  RelB, addiction module antitoxin/DNA-damage-inducible protein J, negative regulator of translation; HAPS_0598  N/A  Click
61 complement(622878..623105)  phage protein; HAPS_0599  N/A  Click
62 complement(623150..623551)  phage protein; HAPS_0600  N/A  Click
63 complement(623625..624290)  phage protein; HAPS_0601  N/A  Click
64 complement(624293..624712)  PHAGE_Entero_mEp460: minor tail protein; HAPS_0602; phage(gi428782325)  3e-13  Click
65 complement(624712..625245)  PHAGE_Entero_mEp237: minor tail protein Z; HAPS_0603; phage(gi435439275)  3e-25  Click
66 complement(625249..625551)  putative bacteriophage tail protein; HAPS_0604  N/A  Click
67 complement(625544..625870)  PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; HAPS_0605; phage(gi169257303)  3e-13  Click
68 complement(625938..627905)  PHAGE_Gifsy_2: bacteriophage Clp protease involved in capsid processing; HAPS_0606; phage(gi169257302)  0.0  Click
69 complement(627930..629429)  PHAGE_Gifsy_2: bacteriophage portal protein; HAPS_0607; phage(gi169257301)  8e-159  Click
70 complement(629430..629651)  PHAGE_Entero_mEp213: hypothetical protein; HAPS_0608; phage(gi428782592)  2e-14  Click
71 complement(629669..631789)  PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, large subunit; HAPS_0609; phage(gi169257299)  0.0  Click
72 complement(631789..632301)  PHAGE_Entero_mEp213: terminase small subunit; HAPS_0610; phage(gi428782590)  2e-44  Click
73 complement(632341..632787)  PHAGE_Haemop_Aaphi23: putative lytic protein Rz1; HAPS_0611; phage(gi44829137)  2e-16  Click
74 complement(632750..633067)  PHAGE_Aggreg_S1249: putative lytic protein Rz; HAPS_0612; phage(gi273809574)  3e-18  Click
75 complement(633067..633612)  PHAGE_Mannhe_phiMHaA1: endolysin; HAPS_0613; phage(gi109289945)  2e-43  Click
76 complement(633587..633862)  hypothetical protein; HAPS_0614  N/A  Click
77 633976..634539  hypothetical protein; HAPS_0615  N/A  Click
78 634606..634623  attR    GCAAATGGATAAATTTTC  N/A  Click
79 634629..634745  hypothetical protein; HAPS_0616  N/A  Click
80 complement(634831..635007)  hypothetical protein; HAPS_0617  N/A  Click
81 635304..635522  hypothetical protein; HAPS_0618  N/A  Click
82 complement(635531..635908)  PHAGE_Haemop_Aaphi23: putative anti-termination protein Q; HAPS_0619; phage(gi31544020)  1e-09  Click
83 complement(635905..636474)  PHAGE_Aggreg_S1249: NinG recombination protein; HAPS_0620; phage(gi273809581)  3e-58  Click
84 complement(636619..637068)  PHAGE_Aggreg_S1249: putative recombination protein NinB; HAPS_0621; phage(gi273809585)  1e-44  Click
85 complement(637303..637974)  PHAGE_Aggreg_S1249: possible bacteriophage replication protein P; HAPS_0622; phage(gi273809587)  5e-41  Click
86 complement(637974..638804)  PHAGE_Haemop_Aaphi23: putative DNA replication protein O; HAPS_0623; phage(gi31544014)  2e-40  Click
87 complement(638801..639583)  PHAGE_Pseudo_F10: Putative DNA-binding protein (Roi); HAPS_0624; phage(gi148912814)  2e-37  Click
88 complement(639863..640063)  PHAGE_Mannhe_phiMHaA1: Cro repressor; HAPS_0625; phage(gi109289971)  2e-09  Click
89 640190..640861  PHAGE_Mannhe_phiMHaA1: CI repressor; HAPS_0626; phage(gi109289970)  1e-20  Click
90 640942..641790  PHAGE_Staphy_EW: ORF014; HAPS_0627; phage(gi66395821)  2e-74  Click
91 641924..643567  putative prophage Lp2 protein 4; HAPS_0628  N/A  Click
92 643612..644427  PHAGE_Synech_S_SKS1: hypothetical protein; HAPS_0629; phage(gi472340954)  2e-15  Click
93 complement(644456..644746)  PHAGE_Burkho_2: gp6, putative addiction module antidote protein; HAPS_0630; phage(gi134288715)  1e-16  Click
Region 2, total : 55 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 853961..854686  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; HAPS_0854; phage(gi116326757)  7e-18  Click
2 complement(854687..854800)  hypothetical protein; HAPS_0855  N/A  Click
3 854802..856088  branched-chain amino acid permease; HAPS_0856  N/A  Click
4 856145..856969  PHAGE_Bacill_SP10: formamidopyrimidine-DNA glycosylase; HAPS_0857; phage(gi418489574)  7e-25  Click
5 complement(857594..857962)  PHAGE_Burkho_BcepMu: gp01; HAPS_0859; phage(gi48696911)  6e-23  Click
6 complement(857964..858362)  PHAGE_Burkho_BcepMu: gp02; HAPS_0860; phage(gi48696912)  3e-11  Click
7 complement(858525..858683)  hypothetical protein; HAPS_0862  N/A  Click
8 complement(858683..858895)  PHAGE_Aeromo_vB_AsaM_56: hypothetical protein; HAPS_0863; phage(gi422937526)  5e-05  Click
9 complement(858892..859416)  PHAGE_Haemop_SuMu: host-nuclease inhibitor protein; HAPS_0864; phage(gi418489043)  9e-46  Click
10 complement(859409..859627)  hypothetical protein; HAPS_0865  N/A  Click
11 complement(859620..860774)  PHAGE_Burkho_BcepMu: gp08; HAPS_0866; phage(gi48696918)  2e-110  Click
12 complement(860817..862427)  PHAGE_Burkho_BcepMu: gp09; HAPS_0867; phage(gi48696919)  4e-121  Click
13 complement(862630..863520)  PHAGE_Burkho_BcepMu: gp10; HAPS_0868; phage(gi48696920)  1e-23  Click
14 complement(863549..863851)  PHAGE_Burkho_BcepMu: gp12; HAPS_0869; phage(gi48696922)  2e-07  Click
15 complement(863848..863991)  hypothetical protein; HAPS_0870  N/A  Click
16 864047..864295  hypothetical protein; HAPS_0871  N/A  Click
17 complement(864488..864721)  putative phage associated protein; HAPS_0872  N/A  Click
18 864785..865084  hypothetical protein; HAPS_0873  N/A  Click
19 865409..865639  hypothetical protein; HAPS_0874  N/A  Click
20 865687..866658  PHAGE_Pseudo_F116: nucleoid-associated protein; HAPS_0875; phage(gi56692913)  1e-29  Click
21 866658..867836  putative phage-like membrane protein; HAPS_0876  N/A  Click
22 867930..868451  PHAGE_Bordet_1: Bbp2; HAPS_0877; phage(gi41179364)  1e-44  Click
23 868552..868785  PHAGE_Haemop_SuMu: hypothetical protein; HAPS_0878; phage(gi418489053)  7e-26  Click
24 868782..869135  PHAGE_Haemop_SuMu: hypothetical protein; HAPS_0879; phage(gi418489054)  4e-43  Click
25 869160..869489  PHAGE_Escher_D108: hypothetical protein; HAPS_0880; phage(gi281199668)  7e-06  Click
26 869493..869783  PHAGE_Escher_D108: hypothetical protein; HAPS_0881; phage(gi281199669)  6e-26  Click
27 869817..870389  PHAGE_Burkho_BcepMu: gp27; HAPS_0882; phage(gi48696937)  6e-09  Click
28 870451..871686  PHAGE_Burkho_BcepMu: gp28; HAPS_0883; phage(gi48696938)  8e-23  Click
29 871690..873108  PHAGE_Burkho_BcepMu: gp29; HAPS_0884; phage(gi48696939)  1e-125  Click
30 873105..874373  PHAGE_Rhodob_RcapMu: head morphogenesis protein; HAPS_0885; phage(gi356870875)  1e-35  Click
31 874500..874955  PHAGE_Pseudo_B3: hypothetical protein B3ORF35; HAPS_0886; phage(gi56692603)  1e-21  Click
32 875176..876282  PHAGE_Burkho_BcepMu: gp32; HAPS_0887; phage(gi48696942)  1e-80  Click
33 876318..877259  PHAGE_Burkho_BcepMu: gp34; HAPS_0888; phage(gi48696944)  3e-54  Click
34 877326..877769  PHAGE_Bathyc_BpV1: hypothetical protein; HAPS_0889; phage(gi313768111)  7e-08  Click
35 877772..878209  PHAGE_Burkho_BcepMu: gp36; HAPS_0890; phage(gi48696946)  3e-17  Click
36 878209..878709  PHAGE_Burkho_BcepMu: gp37; HAPS_0891; phage(gi48696947)  4e-17  Click
37 878719..880113  PHAGE_Burkho_BcepMu: gp39; HAPS_0892; phage(gi48696949)  9e-112  Click
38 880113..880631  PHAGE_Burkho_BcepMu: gp40; HAPS_0893; phage(gi48696950)  2e-37  Click
39 881196..881540  putative phage anti-repressor protein; HAPS_0894  N/A  Click
40 881545..881805  hypothetical protein; HAPS_0895  N/A  Click
41 881885..882172  hypothetical protein; HAPS_0896  N/A  Click
42 882147..882302  hypothetical protein; HAPS_0897  N/A  Click
43 complement(882287..882571)  hypothetical protein; HAPS_0898  N/A  Click
44 882615..885293  PHAGE_Burkho_BcepMu: gp44; HAPS_0899; phage(gi48696954)  3e-43  Click
45 885293..886234  PHAGE_Burkho_BcepMu: gp45; HAPS_0900; phage(gi48696955)  2e-27  Click
46 886227..886445  PHAGE_Burkho_BcepMu: gp46; HAPS_0901; phage(gi48696956)  7e-13  Click
47 886449..887501  PHAGE_Burkho_BcepMu: gp47; HAPS_0902; phage(gi48696957)  2e-66  Click
48 887516..888100  PHAGE_Burkho_BcepMu: gp48; HAPS_0903; phage(gi48696958)  4e-14  Click
49 888158..888526  PHAGE_Burkho_BcepMu: gp49; HAPS_0904; phage(gi48696959)  8e-14  Click
50 888513..889628  PHAGE_Burkho_BcepMu: gp50; HAPS_0905; phage(gi48696960)  4e-54  Click
51 889621..890187  PHAGE_Burkho_BcepMu: gp51; HAPS_0906; phage(gi48696961)  1e-41  Click
52 890211..892127  PHAGE_Haemop_SuMu: putative phage-related tail fiber protein; HAPS_0907; phage(gi418489073)  0.0  Click
53 892137..892703  PHAGE_Haemop_SuMu: putative tail fiber assembly protein; HAPS_0908; phage(gi418489074)  5e-97  Click
54 892696..893175  PHAGE_Haemop_SuMu: enoyl-CoA hydratase/carnithine racemase-like protein; HAPS_0909; phage(gi418489075)  1e-85  Click
55 893489..896413  PHAGE_Salmon_1: putative bacteriophage host-specificity protein; Lambda gpJ homolog; HAPS_0910; phage(gi169257203)  2e-67  Click