Definition Rhodospirillum centenum SW chromosome, complete genome.
Accession NC_011420
Length 4,355,543
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 36 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 26441..26452  attL    CCAGGGCCGCCG  N/A  Click
2 complement(26786..28126)  PHAGE_Strept_phiNJ2: putative recombinase; RC1_0036; phage(gi414090258)  1e-36  Click
3 complement(28123..28632)  putative bacteriophage-related protein; RC1_0037  N/A  Click
4 complement(28632..28823)  hypothetical protein; RC1_0038  N/A  Click
5 29140..29463  putative transcriptional regulator, XRE family; RC1_0039  N/A  Click
6 29565..30194  hypothetical protein; RC1_0040  N/A  Click
7 30308..31474  hypothetical protein; RC1_0041  N/A  Click
8 31782..32414  hypothetical protein; RC1_0042  N/A  Click
9 32554..32739  PHAGE_Erwini_PEp14: putative HTH_MerR-SF-like protein; RC1_0043; phage(gi374531883)  7e-05  Click
10 32871..33176  hypothetical protein; RC1_0044  N/A  Click
11 33173..33670  hypothetical protein; RC1_0045  N/A  Click
12 33787..34638  PHAGE_Salico_CGphi29: hypothetical protein; RC1_0046; phage(gi472340162)  2e-14  Click
13 34650..35405  PHAGE_Suid_h_1: large tegument protein; RC1_0047; phage(gi51557505)  2e-07  Click
14 35390..35683  hypothetical protein; RC1_0048  N/A  Click
15 35680..36045  hypothetical protein; RC1_0049  N/A  Click
16 36060..36275  PHAGE_Pseudo_phi297: hypothetical protein; RC1_0050; phage(gi374531257)  1e-05  Click
17 36272..37069  PHAGE_Burkho_BcepGomr: BcepGomrgp43; RC1_0051; phage(gi146329955)  2e-12  Click
18 37066..38388  PHAGE_phiJL001: exonuclease V; RC1_0052; phage(gi62327199)  7e-61  Click
19 38385..40913  PHAGE_Staphy_phi7401PVL: virulence-associated protein E; RC1_0053; phage(gi448244658)  5e-57  Click
20 complement(40915..41577)  hypothetical protein; RC1_0054  N/A  Click
21 complement(41647..45231)  hypothetical protein; RC1_0055  N/A  Click
22 45531..46070  hypothetical protein; RC1_0056  N/A  Click
23 46067..46378  ribonucleotide reductase, putative; RC1_0057  N/A  Click
24 46375..46572  hypothetical protein; RC1_0058  N/A  Click
25 46565..47017  hypothetical protein; RC1_0059  N/A  Click
26 47407..48792  PHAGE_Strept_1: transferase; RC1_0060; phage(gi39653711)  4e-43  Click
27 48797..50035  PHAGE_Psychr_pOW20_A: DNA methylase; RC1_0061; phage(gi472339820)  1e-67  Click
28 complement(51064..51594)  hypothetical protein; RC1_0063  N/A  Click
29 complement(51695..51946)  PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp12; RC1_0064; phage(gi331028066)  7e-13  Click
30 52023..52613  probable terminase small subunit, Nu1; RC1_0065  N/A  Click
31 52465..54471  PHAGE_Stenot_S1: putative terminase large subunit; RC1_0066; phage(gi213163902)  5e-74  Click
32 54459..54677  hypothetical protein; RC1_0067  N/A  Click
33 54677..56164  PHAGE_Stenot_S1: putative portal protein; RC1_0068; phage(gi213163905)  2e-91  Click
34 56171..58138  PHAGE_Stenot_S1: putative major head protein; RC1_0069; phage(gi213163906)  2e-83  Click
35 58142..58636  PHAGE_Thalas_BA3: hypothetical protein BA3_0024; RC1_0070; phage(gi160700618)  2e-20  Click
36 58649..58822  hypothetical protein; RC1_0071  N/A  Click
37 58859..59197  PHAGE_Stenot_S1: putative recombinase; RC1_0072; phage(gi213163907)  1e-08  Click
38 70118..70129  attR    CCAGGGCCGCCG  N/A  Click
Region 2, total : 54 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1148873..1149196  PHAGE_Haemop_SuMu: Mu-like prophage FluMu DNA-binding protein Ner; RC1_1087; phage(gi418489037)  4e-09  Click
2 1149193..1149357  hypothetical protein; RC1_1089  N/A  Click
3 complement(1149310..1149615)  hypothetical protein; RC1_1088  N/A  Click
4 1149726..1150202  PHAGE_Rhodob_RcapMu: conserved transposable prophage protein; RC1_1090; phage(gi356870852)  4e-16  Click
5 1150183..1150195  attL    ACCGCCGGGGGAC  N/A  Click
6 1150199..1152331  PHAGE_Rhodov_RS1: integrase; RC1_1091; phage(gi472342882)  4e-99  Click
7 1152385..1153122  PHAGE_Rhodov_RS1: transposase; RC1_1092; phage(gi472342883)  9e-58  Click
8 1153125..1153742  PHAGE_Pseudo_MP42: hypothetical protein; RC1_1093; phage(gi399528587)  2e-18  Click
9 1153739..1154128  PHAGE_Rhodov_RS1: hypothetical protein; RC1_1094; phage(gi472342885)  4e-24  Click
10 1154131..1154424  phage-related hypothetical protein; RC1_1095  N/A  Click
11 1154421..1154723  phage-related hypothetical protein; RC1_1096  N/A  Click
12 1155040..1155249  phage-related hypothetical protein; RC1_1098  N/A  Click
13 1155343..1155996  PHAGE_Burkho_BcepMu: gp05; RC1_1099; phage(gi48696915)  7e-40  Click
14 1156043..1156270  phage-related hypothetical protein; RC1_1100  N/A  Click
15 1156263..1156709  phage-related hypothetical protein; RC1_1101  N/A  Click
16 1156808..1157989  PHAGE_Vibrio_VHML: ORF35; RC1_1102; phage(gi27311203)  2e-12  Click
17 1158039..1158494  PHAGE_Burkho_BcepMu: gp02; RC1_1103; phage(gi48696912)  1e-24  Click
18 1158491..1158745  phage-related hypothetical protein; RC1_1104  N/A  Click
19 1158751..1159128  PHAGE_Rhodob_RcapMu: putative transcriptional regulator; RC1_1105; phage(gi356870865)  1e-06  Click
20 1159259..1159819  PHAGE_Bordet_1: Bbp2; RC1_1106; phage(gi41179364)  7e-18  Click
21 1159832..1160422  phage-related hypothetical protein; RC1_1107  N/A  Click
22 1160419..1160616  phage-related hypothetical protein; RC1_1108  N/A  Click
23 1160621..1161040  E or D; RC1_1109  N/A  Click
24 1161037..1161342  PHAGE_Escher_D108: hypothetical protein; RC1_1110; phage(gi281199669)  7e-18  Click
25 1161356..1161898  PHAGE_Burkho_BcepMu: gp27; RC1_1111; phage(gi48696937)  1e-12  Click
26 1161895..1163448  PHAGE_Burkho_BcepMu: gp28; RC1_1112; phage(gi48696938)  1e-171  Click
27 1163448..1164911  PHAGE_Burkho_BcepMu: gp29; RC1_1113; phage(gi48696939)  2e-40  Click
28 1164904..1166127  PHAGE_Burkho_BcepMu: gp30; RC1_1114; phage(gi48696940)  2e-31  Click
29 1166416..1167507  PHAGE_Burkho_BcepMu: gp32; RC1_1115; phage(gi48696942)  2e-70  Click
30 1167507..1167878  PHAGE_Pseudo_B3: hypothetical protein B3ORF37; RC1_1116; phage(gi56692606)  2e-20  Click
31 1167891..1168817  PHAGE_Burkho_BcepMu: gp34; RC1_1117; phage(gi48696944)  7e-16  Click
32 1168829..1169023  hypothetical protein; RC1_1118  N/A  Click
33 1169050..1169463  PHAGE_Pseudo_B3: hypothetical protein B3ORF40; RC1_1119; phage(gi56692609)  8e-08  Click
34 1169463..1169906  PHAGE_Pseudo_D3112: virion morphogenesis protein; RC1_1120; phage(gi38229141)  3e-15  Click
35 1169910..1170404  PHAGE_Burkho_BcepMu: gp37; RC1_1121; phage(gi48696947)  8e-23  Click
36 1170401..1170622  PHAGE_Burkho_BcepMu: gp38; RC1_1122; phage(gi48696948)  1e-09  Click
37 1170624..1172087  PHAGE_Burkho_BcepMu: gp39; RC1_1123; phage(gi48696949)  5e-139  Click
38 1172100..1172621  PHAGE_Burkho_BcepMu: gp40; RC1_1124; phage(gi48696950)  8e-45  Click
39 1172628..1172909  hypothetical protein; RC1_1125  N/A  Click
40 complement(1173034..1173273)  phage-related hypothetical protein; RC1_1126  N/A  Click
41 1173292..1175982  PHAGE_Salmon_ST64B: tail protein; RC1_1127; phage(gi23505460)  1e-68  Click
42 1175982..1176413  PHAGE_Burkho_BcepMu: gp45; RC1_1128; phage(gi48696955)  1e-13  Click
43 1176422..1176637  PHAGE_Burkho_BcepMu: gp46; RC1_1129; phage(gi48696956)  1e-18  Click
44 1176641..1177627  PHAGE_Burkho_BcepMu: gp47; RC1_1130; phage(gi48696957)  3e-73  Click
45 1177617..1178045  PHAGE_Burkho_BcepMu: gp48; RC1_1131; phage(gi48696958)  3e-19  Click
46 1178402..1178764  PHAGE_Burkho_BcepMu: gp49; RC1_1132; phage(gi48696959)  2e-27  Click
47 1178761..1179867  PHAGE_Burkho_BcepMu: gp50; RC1_1133; phage(gi48696960)  5e-89  Click
48 1179860..1180906  PHAGE_Burkho_BcepMu: gp51; RC1_1134; phage(gi48696961)  2e-24  Click
49 1180899..1181309  phage-related hypothetical protein; RC1_1135  N/A  Click
50 1181314..1181877  PHAGE_Entero_P1: S; RC1_1136; phage(gi46401656)  2e-14  Click
51 1181891..1184443  PHAGE_Vibrio_VHML: ORF35; RC1_1137; phage(gi27311203)  6e-09  Click
52 1184513..1184797  phage-related hypothetical protein; RC1_1138  N/A  Click
53 1184869..1185156  hypothetical protein; RC1_1139  N/A  Click
54 1185425..1186495  PHAGE_Bordet_1: reverse transcriptase; RC1_1140; phage(gi41179367)  3e-52  Click
55 complement(1186638..1188401)  PROPHAGE_Deinoc_R1: minor tail protein gp26-related protein; RC1_1141; phage(gi15807776)  5e-06  Click
56 1196713..1196725  attR    ACCGCCGGGGGAC  N/A  Click
Region 3, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1524699..1526972)  PHAGE_Lactoc_949: putative DNA gyrase subunit A-topoisomerase; RC1_1481; phage(gi327197938)  5e-56  Click
2 complement(1526969..1527721)  DNA repair protein RecO, putative; RC1_1482  N/A  Click
3 1527906..1528580  PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; RC1_1483; phage(gi197322490)  5e-10  Click
4 complement(1528878..1529120)  phage-related hypothetical protein; RC1_1484  N/A  Click
5 complement(1530238..1530813)  PHAGE_Pseudo_MP22: transposase A; RC1_1485; phage(gi157834977)  1e-08  Click
6 complement(1530891..1531238)  phage-related hypothetical protein; RC1_1486  N/A  Click
7 1532034..1532489  phage-related hypothetical protein; RC1_1487  N/A  Click
8 1532584..1533060  phage-related hypothetical protein; RC1_1488  N/A  Click
9 1533067..1534017  PHAGE_Burkho_BcepMu: gp32; RC1_1489; phage(gi48696942)  2e-42  Click
10 1534036..1534968  PHAGE_Burkho_BcepMu: gp34; RC1_1490; phage(gi48696944)  3e-16  Click
11 1535034..1535669  phage-related hypothetical protein; RC1_1491  N/A  Click
12 1536011..1537840  PHAGE_Pseudo_YuA: hypothetical protein; RC1_1492; phage(gi162135126)  9e-06  Click
13 complement(1537863..1538885)  GTP-binding protein Era; RC1_1493  N/A  Click
14 complement(1538882..1539592)  PHAGE_Microm_12T: ribonuclease III; RC1_1494; phage(gi472342664)  9e-20  Click
Region 4, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2811863..2812600)  PROPHAGE_Shewan_MR-1: putative transposase; RC1_2731; phage(gi28275189)  9e-12  Click
2 complement(2812417..2812929)  PROPHAGE_Shewan_MR-1: ISSod10, transposase OrfA; RC1_2732; phage(gi24371809)  7e-11  Click
3 2813292..2813435  transposase, is4 family; RC1_2733  N/A  Click
4 complement(2814801..2816039)  PHAGE_Xantho_CP2: hypothetical protein; RC1_2734; phage(gi448245209)  6e-06  Click
5 complement(2816470..2816546)  tRNA  N/A  Click
6 complement(2816575..2816651)  tRNA  N/A  Click
7 2816865..2817350  PHAGE_Cellul_phiST: hypothetical protein; RC1_2738; phage(gi472339898)  7e-07  Click
8 complement(2817331..2818428)  PHAGE_Burkho_BcepMigl: virion associated protein; RC1_2737; phage(gi431809925)  7e-05  Click
9 complement(2818425..2818880)  PHAGE_Nile_virus: Virion core protein; RC1_2739; phage(gi115531722)  1e-04  Click