Definition | Rhodospirillum centenum SW chromosome, complete genome. |
---|---|
Accession | NC_011420 |
Length | 4,355,543 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 36 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 26441..26452 | attL CCAGGGCCGCCG | N/A | Click |
2 | complement(26786..28126) | PHAGE_Strept_phiNJ2: putative recombinase; RC1_0036; phage(gi414090258) | 1e-36 | Click |
3 | complement(28123..28632) | putative bacteriophage-related protein; RC1_0037 | N/A | Click |
4 | complement(28632..28823) | hypothetical protein; RC1_0038 | N/A | Click |
5 | 29140..29463 | putative transcriptional regulator, XRE family; RC1_0039 | N/A | Click |
6 | 29565..30194 | hypothetical protein; RC1_0040 | N/A | Click |
7 | 30308..31474 | hypothetical protein; RC1_0041 | N/A | Click |
8 | 31782..32414 | hypothetical protein; RC1_0042 | N/A | Click |
9 | 32554..32739 | PHAGE_Erwini_PEp14: putative HTH_MerR-SF-like protein; RC1_0043; phage(gi374531883) | 7e-05 | Click |
10 | 32871..33176 | hypothetical protein; RC1_0044 | N/A | Click |
11 | 33173..33670 | hypothetical protein; RC1_0045 | N/A | Click |
12 | 33787..34638 | PHAGE_Salico_CGphi29: hypothetical protein; RC1_0046; phage(gi472340162) | 2e-14 | Click |
13 | 34650..35405 | PHAGE_Suid_h_1: large tegument protein; RC1_0047; phage(gi51557505) | 2e-07 | Click |
14 | 35390..35683 | hypothetical protein; RC1_0048 | N/A | Click |
15 | 35680..36045 | hypothetical protein; RC1_0049 | N/A | Click |
16 | 36060..36275 | PHAGE_Pseudo_phi297: hypothetical protein; RC1_0050; phage(gi374531257) | 1e-05 | Click |
17 | 36272..37069 | PHAGE_Burkho_BcepGomr: BcepGomrgp43; RC1_0051; phage(gi146329955) | 2e-12 | Click |
18 | 37066..38388 | PHAGE_phiJL001: exonuclease V; RC1_0052; phage(gi62327199) | 7e-61 | Click |
19 | 38385..40913 | PHAGE_Staphy_phi7401PVL: virulence-associated protein E; RC1_0053; phage(gi448244658) | 5e-57 | Click |
20 | complement(40915..41577) | hypothetical protein; RC1_0054 | N/A | Click |
21 | complement(41647..45231) | hypothetical protein; RC1_0055 | N/A | Click |
22 | 45531..46070 | hypothetical protein; RC1_0056 | N/A | Click |
23 | 46067..46378 | ribonucleotide reductase, putative; RC1_0057 | N/A | Click |
24 | 46375..46572 | hypothetical protein; RC1_0058 | N/A | Click |
25 | 46565..47017 | hypothetical protein; RC1_0059 | N/A | Click |
26 | 47407..48792 | PHAGE_Strept_1: transferase; RC1_0060; phage(gi39653711) | 4e-43 | Click |
27 | 48797..50035 | PHAGE_Psychr_pOW20_A: DNA methylase; RC1_0061; phage(gi472339820) | 1e-67 | Click |
28 | complement(51064..51594) | hypothetical protein; RC1_0063 | N/A | Click |
29 | complement(51695..51946) | PHAGE_Roseob_1: hypothetical protein RDJLphi1_gp12; RC1_0064; phage(gi331028066) | 7e-13 | Click |
30 | 52023..52613 | probable terminase small subunit, Nu1; RC1_0065 | N/A | Click |
31 | 52465..54471 | PHAGE_Stenot_S1: putative terminase large subunit; RC1_0066; phage(gi213163902) | 5e-74 | Click |
32 | 54459..54677 | hypothetical protein; RC1_0067 | N/A | Click |
33 | 54677..56164 | PHAGE_Stenot_S1: putative portal protein; RC1_0068; phage(gi213163905) | 2e-91 | Click |
34 | 56171..58138 | PHAGE_Stenot_S1: putative major head protein; RC1_0069; phage(gi213163906) | 2e-83 | Click |
35 | 58142..58636 | PHAGE_Thalas_BA3: hypothetical protein BA3_0024; RC1_0070; phage(gi160700618) | 2e-20 | Click |
36 | 58649..58822 | hypothetical protein; RC1_0071 | N/A | Click |
37 | 58859..59197 | PHAGE_Stenot_S1: putative recombinase; RC1_0072; phage(gi213163907) | 1e-08 | Click |
38 | 70118..70129 | attR CCAGGGCCGCCG | N/A | Click |
Region 2, total : 54 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1148873..1149196 | PHAGE_Haemop_SuMu: Mu-like prophage FluMu DNA-binding protein Ner; RC1_1087; phage(gi418489037) | 4e-09 | Click |
2 | 1149193..1149357 | hypothetical protein; RC1_1089 | N/A | Click |
3 | complement(1149310..1149615) | hypothetical protein; RC1_1088 | N/A | Click |
4 | 1149726..1150202 | PHAGE_Rhodob_RcapMu: conserved transposable prophage protein; RC1_1090; phage(gi356870852) | 4e-16 | Click |
5 | 1150183..1150195 | attL ACCGCCGGGGGAC | N/A | Click |
6 | 1150199..1152331 | PHAGE_Rhodov_RS1: integrase; RC1_1091; phage(gi472342882) | 4e-99 | Click |
7 | 1152385..1153122 | PHAGE_Rhodov_RS1: transposase; RC1_1092; phage(gi472342883) | 9e-58 | Click |
8 | 1153125..1153742 | PHAGE_Pseudo_MP42: hypothetical protein; RC1_1093; phage(gi399528587) | 2e-18 | Click |
9 | 1153739..1154128 | PHAGE_Rhodov_RS1: hypothetical protein; RC1_1094; phage(gi472342885) | 4e-24 | Click |
10 | 1154131..1154424 | phage-related hypothetical protein; RC1_1095 | N/A | Click |
11 | 1154421..1154723 | phage-related hypothetical protein; RC1_1096 | N/A | Click |
12 | 1155040..1155249 | phage-related hypothetical protein; RC1_1098 | N/A | Click |
13 | 1155343..1155996 | PHAGE_Burkho_BcepMu: gp05; RC1_1099; phage(gi48696915) | 7e-40 | Click |
14 | 1156043..1156270 | phage-related hypothetical protein; RC1_1100 | N/A | Click |
15 | 1156263..1156709 | phage-related hypothetical protein; RC1_1101 | N/A | Click |
16 | 1156808..1157989 | PHAGE_Vibrio_VHML: ORF35; RC1_1102; phage(gi27311203) | 2e-12 | Click |
17 | 1158039..1158494 | PHAGE_Burkho_BcepMu: gp02; RC1_1103; phage(gi48696912) | 1e-24 | Click |
18 | 1158491..1158745 | phage-related hypothetical protein; RC1_1104 | N/A | Click |
19 | 1158751..1159128 | PHAGE_Rhodob_RcapMu: putative transcriptional regulator; RC1_1105; phage(gi356870865) | 1e-06 | Click |
20 | 1159259..1159819 | PHAGE_Bordet_1: Bbp2; RC1_1106; phage(gi41179364) | 7e-18 | Click |
21 | 1159832..1160422 | phage-related hypothetical protein; RC1_1107 | N/A | Click |
22 | 1160419..1160616 | phage-related hypothetical protein; RC1_1108 | N/A | Click |
23 | 1160621..1161040 | E or D; RC1_1109 | N/A | Click |
24 | 1161037..1161342 | PHAGE_Escher_D108: hypothetical protein; RC1_1110; phage(gi281199669) | 7e-18 | Click |
25 | 1161356..1161898 | PHAGE_Burkho_BcepMu: gp27; RC1_1111; phage(gi48696937) | 1e-12 | Click |
26 | 1161895..1163448 | PHAGE_Burkho_BcepMu: gp28; RC1_1112; phage(gi48696938) | 1e-171 | Click |
27 | 1163448..1164911 | PHAGE_Burkho_BcepMu: gp29; RC1_1113; phage(gi48696939) | 2e-40 | Click |
28 | 1164904..1166127 | PHAGE_Burkho_BcepMu: gp30; RC1_1114; phage(gi48696940) | 2e-31 | Click |
29 | 1166416..1167507 | PHAGE_Burkho_BcepMu: gp32; RC1_1115; phage(gi48696942) | 2e-70 | Click |
30 | 1167507..1167878 | PHAGE_Pseudo_B3: hypothetical protein B3ORF37; RC1_1116; phage(gi56692606) | 2e-20 | Click |
31 | 1167891..1168817 | PHAGE_Burkho_BcepMu: gp34; RC1_1117; phage(gi48696944) | 7e-16 | Click |
32 | 1168829..1169023 | hypothetical protein; RC1_1118 | N/A | Click |
33 | 1169050..1169463 | PHAGE_Pseudo_B3: hypothetical protein B3ORF40; RC1_1119; phage(gi56692609) | 8e-08 | Click |
34 | 1169463..1169906 | PHAGE_Pseudo_D3112: virion morphogenesis protein; RC1_1120; phage(gi38229141) | 3e-15 | Click |
35 | 1169910..1170404 | PHAGE_Burkho_BcepMu: gp37; RC1_1121; phage(gi48696947) | 8e-23 | Click |
36 | 1170401..1170622 | PHAGE_Burkho_BcepMu: gp38; RC1_1122; phage(gi48696948) | 1e-09 | Click |
37 | 1170624..1172087 | PHAGE_Burkho_BcepMu: gp39; RC1_1123; phage(gi48696949) | 5e-139 | Click |
38 | 1172100..1172621 | PHAGE_Burkho_BcepMu: gp40; RC1_1124; phage(gi48696950) | 8e-45 | Click |
39 | 1172628..1172909 | hypothetical protein; RC1_1125 | N/A | Click |
40 | complement(1173034..1173273) | phage-related hypothetical protein; RC1_1126 | N/A | Click |
41 | 1173292..1175982 | PHAGE_Salmon_ST64B: tail protein; RC1_1127; phage(gi23505460) | 1e-68 | Click |
42 | 1175982..1176413 | PHAGE_Burkho_BcepMu: gp45; RC1_1128; phage(gi48696955) | 1e-13 | Click |
43 | 1176422..1176637 | PHAGE_Burkho_BcepMu: gp46; RC1_1129; phage(gi48696956) | 1e-18 | Click |
44 | 1176641..1177627 | PHAGE_Burkho_BcepMu: gp47; RC1_1130; phage(gi48696957) | 3e-73 | Click |
45 | 1177617..1178045 | PHAGE_Burkho_BcepMu: gp48; RC1_1131; phage(gi48696958) | 3e-19 | Click |
46 | 1178402..1178764 | PHAGE_Burkho_BcepMu: gp49; RC1_1132; phage(gi48696959) | 2e-27 | Click |
47 | 1178761..1179867 | PHAGE_Burkho_BcepMu: gp50; RC1_1133; phage(gi48696960) | 5e-89 | Click |
48 | 1179860..1180906 | PHAGE_Burkho_BcepMu: gp51; RC1_1134; phage(gi48696961) | 2e-24 | Click |
49 | 1180899..1181309 | phage-related hypothetical protein; RC1_1135 | N/A | Click |
50 | 1181314..1181877 | PHAGE_Entero_P1: S; RC1_1136; phage(gi46401656) | 2e-14 | Click |
51 | 1181891..1184443 | PHAGE_Vibrio_VHML: ORF35; RC1_1137; phage(gi27311203) | 6e-09 | Click |
52 | 1184513..1184797 | phage-related hypothetical protein; RC1_1138 | N/A | Click |
53 | 1184869..1185156 | hypothetical protein; RC1_1139 | N/A | Click |
54 | 1185425..1186495 | PHAGE_Bordet_1: reverse transcriptase; RC1_1140; phage(gi41179367) | 3e-52 | Click |
55 | complement(1186638..1188401) | PROPHAGE_Deinoc_R1: minor tail protein gp26-related protein; RC1_1141; phage(gi15807776) | 5e-06 | Click |
56 | 1196713..1196725 | attR ACCGCCGGGGGAC | N/A | Click |
Region 3, total : 14 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(1524699..1526972) | PHAGE_Lactoc_949: putative DNA gyrase subunit A-topoisomerase; RC1_1481; phage(gi327197938) | 5e-56 | Click |
2 | complement(1526969..1527721) | DNA repair protein RecO, putative; RC1_1482 | N/A | Click |
3 | 1527906..1528580 | PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; RC1_1483; phage(gi197322490) | 5e-10 | Click |
4 | complement(1528878..1529120) | phage-related hypothetical protein; RC1_1484 | N/A | Click |
5 | complement(1530238..1530813) | PHAGE_Pseudo_MP22: transposase A; RC1_1485; phage(gi157834977) | 1e-08 | Click |
6 | complement(1530891..1531238) | phage-related hypothetical protein; RC1_1486 | N/A | Click |
7 | 1532034..1532489 | phage-related hypothetical protein; RC1_1487 | N/A | Click |
8 | 1532584..1533060 | phage-related hypothetical protein; RC1_1488 | N/A | Click |
9 | 1533067..1534017 | PHAGE_Burkho_BcepMu: gp32; RC1_1489; phage(gi48696942) | 2e-42 | Click |
10 | 1534036..1534968 | PHAGE_Burkho_BcepMu: gp34; RC1_1490; phage(gi48696944) | 3e-16 | Click |
11 | 1535034..1535669 | phage-related hypothetical protein; RC1_1491 | N/A | Click |
12 | 1536011..1537840 | PHAGE_Pseudo_YuA: hypothetical protein; RC1_1492; phage(gi162135126) | 9e-06 | Click |
13 | complement(1537863..1538885) | GTP-binding protein Era; RC1_1493 | N/A | Click |
14 | complement(1538882..1539592) | PHAGE_Microm_12T: ribonuclease III; RC1_1494; phage(gi472342664) | 9e-20 | Click |
Region 4, total : 7 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(2811863..2812600) | PROPHAGE_Shewan_MR-1: putative transposase; RC1_2731; phage(gi28275189) | 9e-12 | Click |
2 | complement(2812417..2812929) | PROPHAGE_Shewan_MR-1: ISSod10, transposase OrfA; RC1_2732; phage(gi24371809) | 7e-11 | Click |
3 | 2813292..2813435 | transposase, is4 family; RC1_2733 | N/A | Click |
4 | complement(2814801..2816039) | PHAGE_Xantho_CP2: hypothetical protein; RC1_2734; phage(gi448245209) | 6e-06 | Click |
5 | complement(2816470..2816546) | tRNA | N/A | Click |
6 | complement(2816575..2816651) | tRNA | N/A | Click |
7 | 2816865..2817350 | PHAGE_Cellul_phiST: hypothetical protein; RC1_2738; phage(gi472339898) | 7e-07 | Click |
8 | complement(2817331..2818428) | PHAGE_Burkho_BcepMigl: virion associated protein; RC1_2737; phage(gi431809925) | 7e-05 | Click |
9 | complement(2818425..2818880) | PHAGE_Nile_virus: Virion core protein; RC1_2739; phage(gi115531722) | 1e-04 | Click |