Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 14 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(855807..856337)  phage protein; VSAL_I0768  N/A  Click
2 complement(856328..856801)  phage protein; VSAL_I0769  N/A  Click
3 complement(856805..857263)  phage protein; VSAL_I0770  N/A  Click
4 complement(857360..858394)  PHAGE_Ralsto_phiRSA1: P2 family phage major capsid protein; VSAL_I0771; phage(gi145708082)  8e-56  Click
5 complement(858446..859318)  PHAGE_Haemop_HP2: scaffold; VSAL_I0772; phage(gi17981831)  5e-26  Click
6 859448..861244  PHAGE_Haemop_HP2: terminase; VSAL_I0773; phage(gi17981830)  1e-109  Click
7 complement(862454..863467)  phage protein; VSAL_I0775  N/A  Click
8 complement(864223..864978)  N-acetylmuramoyl-L-alanine amidase; VSAL_I0777  N/A  Click
9 complement(865267..865629)  phage protein; VSAL_I0778  N/A  Click
10 complement(865634..865804)  membrane protein, phage gene; VSAL_I0779  N/A  Click
11 complement(865839..866237)  PHAGE_Entero_GJ1: putative endolysin; VSAL_I0780; phage(gi161617936)  2e-13  Click
12 866373..866687  transposase; VSAL_I0781  N/A  Click
13 866684..867031  PROPHAGE_Pseudo_KT2440: ISPpu15, transposase Orf1; VSAL_I0782; phage(gi26990788)  2e-22  Click
14 867103..868590  PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; VSAL_I0783; phage(gi26989833)  4e-107  Click
Region 2, total : 42 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1110460..1110473  attL    GAAGATCACATTAC  N/A  Click
2 complement(1110598..1111641)  PHAGE_Salmon_RE_2010: integrase; VSAL_I1008; phage(gi418489683)  1e-87  Click
3 complement(1111704..1112492)  PHAGE_Vibrio_K139: Glo; VSAL_I1009; phage(gi17975107)  1e-11  Click
4 complement(1112515..1113471)  PHAGE_Vibrio_K139: CI; VSAL_I1010; phage(gi17975109)  1e-53  Click
5 1113644..1113844  PHAGE_Pasteu_F108: Cox; VSAL_I1011; phage(gi109302900)  6e-06  Click
6 1113931..1114473  PHAGE_Vibrio_K139: CII; VSAL_I1012; phage(gi17975111)  1e-61  Click
7 1114483..1114806  PHAGE_Vibrio_K139: hypothetical protein K139p07; VSAL_I1013; phage(gi17975112)  5e-13  Click
8 1114874..1115356  PHAGE_Vibrio_K139: hypothetical protein K139p08; VSAL_I1014; phage(gi17975113)  6e-06  Click
9 1115353..1115754  phage protein; VSAL_I1015  N/A  Click
10 1115754..1115882  phage protein; VSAL_I1016  N/A  Click
11 1115885..1116157  phage protein; VSAL_I1017  N/A  Click
12 1116160..1116390  PHAGE_Vibrio_K139: hypothetical protein K139p11; VSAL_I1018; phage(gi17975116)  3e-10  Click
13 1116387..1116746  phage protein; VSAL_I1019  N/A  Click
14 1116746..1119259  PHAGE_Vibrio_K139: rep; VSAL_I1020; phage(gi17975119)  0.0  Click
15 1119368..1119751  phage protein; VSAL_I1021  N/A  Click
16 1119972..1120886  membrane protein, phage gene; VSAL_I1022  N/A  Click
17 1121087..1121341  PHAGE_Vibrio_K139: hypothetical protein K139p17; VSAL_I1023; phage(gi17975122)  1e-12  Click
18 complement(1121338..1121802)  PHAGE_Vibrio_K139: zinc-finger protein; VSAL_I1024; phage(gi17975123)  1e-18  Click
19 complement(1121868..1122902)  PHAGE_Vibrio_K139: putative capsid portal protein; VSAL_I1025; phage(gi17975125)  4e-127  Click
20 complement(1122899..1124671)  PHAGE_Vibrio_K139: putative terminase, ATPase subunit; VSAL_I1026; phage(gi17975126)  0.0  Click
21 1124840..1125715  PHAGE_Vibrio_K139: putative capsid scaffolding protein; VSAL_I1027; phage(gi17975127)  2e-62  Click
22 1125729..1126739  PHAGE_Vibrio_K139: putative major capsid protein; VSAL_I1028; phage(gi17975128)  3e-77  Click
23 1126756..1127472  PHAGE_Vibrio_K139: putative terminase, endonuclease subunit; VSAL_I1029; phage(gi17975129)  4e-71  Click
24 1127601..1127942  membrane protein, phage gene; VSAL_I1030  N/A  Click
25 1127935..1128399  PHAGE_Vibrio_K139: putative head completion protein; VSAL_I1031; phage(gi17975130)  7e-39  Click
26 1128396..1128920  PHAGE_Vibrio_K139: hypothetical protein K139p26; VSAL_I1032; phage(gi17975131)  3e-24  Click
27 1129637..1130749  PHAGE_Vibrio_K139: putative tail sheath protein; VSAL_I1034; phage(gi17975134)  2e-76  Click
28 1130749..1131204  PHAGE_Vibrio_K139: putative tail tube protein; VSAL_I1035; phage(gi17975135)  8e-42  Click
29 1131216..1131431  PHAGE_Vibrio_K139: C4-type zinc-finger; VSAL_I1036; phage(gi17975136)  6e-13  Click
30 1131428..1131850  phage protein; VSAL_I1037  N/A  Click
31 1131853..1132098  phage protein; VSAL_I1038  N/A  Click
32 1132101..1132340  protein, phage gene; VSAL_I1039  N/A  Click
33 1132337..1132600  PHAGE_Vibrio_K139: hypothetical protein K139p35; VSAL_I1040; phage(gi17975140)  3e-09  Click
34 1132788..1134902  PHAGE_Vibrio_K139: putative tail length determinator; VSAL_I1041; phage(gi17975141)  8e-174  Click
35 1134899..1135225  PHAGE_Vibrio_K139: hypothetical protein K139p37; VSAL_I1042; phage(gi17975142)  7e-21  Click
36 1135222..1136406  PHAGE_Vibrio_K139: hypothetical protein K139p38; VSAL_I1043; phage(gi17975143)  2e-111  Click
37 1136399..1136989  PHAGE_Vibrio_K139: hypothetical protein K139p39; VSAL_I1044; phage(gi17975144)  5e-51  Click
38 1136992..1139064  PHAGE_Vibrio_K139: putative tail fiber protein; VSAL_I1045; phage(gi17975145)  1e-48  Click
39 1139064..1139507  phage protein; VSAL_I1046  N/A  Click
40 1139507..1140400  PHAGE_Vibrio_K139: hypothetical protein K139p42; VSAL_I1047; phage(gi17975147)  1e-57  Click
41 1140397..1140945  PHAGE_Vibrio_K139: hypothetical protein K139p43; VSAL_I1048; phage(gi17975148)  2e-29  Click
42 1140942..1142567  PHAGE_Vibrio_K139: hypothetical protein K139p44; VSAL_I1049; phage(gi17975149)  3e-122  Click
43 1142569..1142766  PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; VSAL_I1050; phage(gi428782736)  6e-09  Click
44 1144511..1144524  attR    GAAGATCACATTAC  N/A  Click
Region 3, total : 20 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1740065..1741708)  PHAGE_Lactob_LF1: tail fiber; VSAL_I1636; phage(gi418489400)  5e-05  Click
2 1741945..1742901  PHAGE_Spirop_R8A2B: putative transposase; VSAL_I1637; phage(gi9626114)  1e-16  Click
3 1743084..1743371  phage protein; VSAL_I1638  N/A  Click
4 1743368..1743871  phage protein; VSAL_I1639  N/A  Click
5 complement(1744160..1744405)  phage protein; VSAL_I1640  N/A  Click
6 complement(1744395..1744658)  phage protein; VSAL_I1641  N/A  Click
7 complement(1744838..1745956)  phage protein; VSAL_I1642  N/A  Click
8 complement(1745949..1746257)  phage protein; VSAL_I1643  N/A  Click
9 complement(1746239..1746901)  phage protein; VSAL_I1644  N/A  Click
10 complement(1747082..1747396)  DNA-binding protein, phage gene; VSAL_I1645  N/A  Click
11 complement(1747383..1747739)  phage protein; VSAL_I1646  N/A  Click
12 complement(1747924..1748379)  membrane protein, phage gene; VSAL_I1647  N/A  Click
13 complement(1748538..1748993)  phage protein; VSAL_I1648  N/A  Click
14 complement(1749138..1749884)  membrane protein, phage gene; VSAL_I1649  N/A  Click
15 complement(1750329..1750532)  membrane protein, phage gene; VSAL_I1650  N/A  Click
16 complement(1750561..1751307)  phage protein; VSAL_I1651  N/A  Click
17 complement(1751427..1752308)  transposase; VSAL_I1652  N/A  Click
18 1753065..1753376  transposase; VSAL_I1654  N/A  Click
19 1753373..1753720  PROPHAGE_Pseudo_KT2440: ISPpu15, transposase Orf1; VSAL_I1655; phage(gi26990788)  2e-22  Click
20 1753792..1755279  PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; VSAL_I1656; phage(gi26989833)  9e-107  Click