| Definition | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 chromosome, complete genome. |
|---|---|
| Accession | NC_011205 |
| Length | 4,842,908 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 55 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 617006..617046 | attL TCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCGC | N/A | Click |
| 2 | complement(617064..618227) | PHAGE_Salmon_ST160: Int; SeD_A0603; phage(gi318065905) | 2e-172 | Click |
| 3 | complement(618879..619190) | PHAGE_Stx2_c_I: hypothetical protein Stx2Ip084; SeD_A0604; phage(gi20065879) | 2e-56 | Click |
| 4 | complement(619272..619553) | PHAGE_Entero_phiV10: hypothetical protein PhiV10p54; SeD_A0605; phage(gi89152468) | 2e-50 | Click |
| 5 | complement(619546..620628) | PHAGE_Salmon_vB_SemP_Emek: Eaa1; SeD_A0606; phage(gi399498822) | 1e-94 | Click |
| 6 | complement(620625..620918) | PHAGE_Klebsi_phiKO2: Gp43; SeD_A0607; phage(gi46402129) | 8e-36 | Click |
| 7 | complement(621303..621884) | PHAGE_Salmon_ST160: hypothetical protein; SeD_A0608; phage(gi318065911) | 1e-52 | Click |
| 8 | complement(621881..622051) | PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; SeD_A0609; phage(gi399528797) | 9e-27 | Click |
| 9 | complement(622062..622355) | PHAGE_Salmon_ST160: Abc2; SeD_A0610; phage(gi318065913) | 2e-49 | Click |
| 10 | complement(622928..623434) | PHAGE_Salmon_epsilon34: SSB; Single-strand binding protein; SeD_A0611; phage(gi221328653) | 2e-95 | Click |
| 11 | complement(623435..624142) | PHAGE_Salmon_ST160: recombination protein; SeD_A0612; phage(gi318065915) | 5e-138 | Click |
| 12 | complement(624151..624339) | PHAGE_Salmon_ST160: recombination protein; SeD_A0613; phage(gi318065916) | 8e-31 | Click |
| 13 | complement(624781..624906) | PHAGE_Salmon_epsilon34: hypothetical protein epsilon34_gp40; SeD_A0615; phage(gi221328658) | 7e-16 | Click |
| 14 | complement(625165..625311) | hypothetical protein; SeD_A0616 | N/A | Click |
| 15 | complement(625524..625856) | PHAGE_Salmon_ST160: Gp24; SeD_A0617; phage(gi318065922) | 1e-50 | Click |
| 16 | 625876..626073 | hypothetical protein; SeD_A0618 | N/A | Click |
| 17 | 626220..626429 | PHAGE_Salmon_vB_SosS_Oslo: hypothetical protein; SeD_A0619; phage(gi399528808) | 4e-30 | Click |
| 18 | complement(626465..627388) | hypothetical protein; SeD_A0620 | N/A | Click |
| 19 | complement(628192..628311) | hypothetical protein; SeD_A0622 | N/A | Click |
| 20 | 628305..628421 | hypothetical protein; SeD_A0621 | N/A | Click |
| 21 | 628765..628884 | PHAGE_Salmon_ST160: C1; SeD_A0623; phage(gi318065927) | 9e-16 | Click |
| 22 | 629058..629891 | PHAGE_Entero_P22: hypothetical protein P22gp51; SeD_A0624; phage(gi9635519) | 1e-128 | Click |
| 23 | 629888..631264 | PHAGE_Salmon_SPN9CC: replicative DNA helicase; SeD_A0625; phage(gi389060513) | 0.0 | Click |
| 24 | 631320..631778 | PHAGE_Entero_mEp234: NinB protein; SeD_A0626; phage(gi428782300) | 9e-81 | Click |
| 25 | 631775..632647 | PHAGE_Salmon_vB_SosS_Oslo: NinC protein; SeD_A0627; phage(gi399528823) | 4e-167 | Click |
| 26 | 632963..633139 | PHAGE_Salmon_vB_SemP_Emek: NinF; SeD_A0628; phage(gi399498849) | 5e-27 | Click |
| 27 | 634411..634548 | PHAGE_Salmon_ST160: Gp23; SeD_A0629; phage(gi318065942) | 1e-14 | Click |
| 28 | 634928..635254 | PHAGE_Entero_P22: inhibitor of gene 13' protein holin; SeD_A0630; phage(gi9635530) | 7e-56 | Click |
| 29 | 635238..635675 | PHAGE_Entero_ES18: gp76; SeD_A0631; phage(gi62362289) | 5e-76 | Click |
| 30 | 635672..636142 | PHAGE_Salmon_SPN3UB: endopeptidase Rz; SeD_A0632; phage(gi423262445) | 1e-66 | Click |
| 31 | complement(636377..636502) | hypothetical protein; SeD_A0633 | N/A | Click |
| 32 | 636604..636885 | PHAGE_Salmon_SE1: hypothetical protein SE1_gp47; SeD_A0634; phage(gi219681238) | 2e-46 | Click |
| 33 | 637822..637944 | hypothetical protein; SeD_A0636 | N/A | Click |
| 34 | 638187..638675 | PHAGE_Salmon_ST160: Gp3; SeD_A0637; phage(gi318065949) | 5e-91 | Click |
| 35 | 638653..640152 | PHAGE_Salmon_ST160: Gp2; SeD_A0638; phage(gi318065950) | 0.0 | Click |
| 36 | 640152..642329 | PHAGE_Salmon_ST160: Gp1; SeD_A0639; phage(gi318065951) | 0.0 | Click |
| 37 | 642343..643254 | PHAGE_Salmon_ST160: Gp8; SeD_A0640; phage(gi318065952) | 1e-168 | Click |
| 38 | 643254..644546 | PHAGE_Salmon_ST160: Gp5; SeD_A0641; phage(gi318065953) | 0.0 | Click |
| 39 | 644587..645147 | PHAGE_Salmon_epsilon34: hypothetical protein epsilon34_gp06; SeD_A0642; phage(gi221328624) | 1e-110 | Click |
| 40 | 645131..645631 | PHAGE_Salmon_ST160: Gp4; SeD_A0643; phage(gi318065955) | 6e-93 | Click |
| 41 | 645591..647009 | PHAGE_Salmon_ST160: Gp10; SeD_A0644; phage(gi318065956) | 0.0 | Click |
| 42 | 647013..647714 | PHAGE_Salmon_epsilon34: Tail accessory protein; SeD_A0645; phage(gi221328627) | 7e-118 | Click |
| 43 | 647714..648169 | PHAGE_Salmon_ST160: Gp14; SeD_A0646; phage(gi318065958) | 3e-86 | Click |
| 44 | 648172..648861 | PHAGE_Salmon_ST160: Gp7; SeD_A0647; phage(gi318065959) | 4e-126 | Click |
| 45 | 648872..650176 | PHAGE_Salmon_ST160: Gp20; SeD_A0648; phage(gi318065960) | 0.0 | Click |
| 46 | 650176..652089 | PHAGE_Salmon_ST160: Gp16; SeD_A0649; phage(gi318065961) | 0.0 | Click |
| 47 | complement(652107..652436) | hypothetical protein; SeD_A0650 | N/A | Click |
| 48 | complement(652846..653025) | PHAGE_Salmon_SE1: hypothetical protein SE1_gp65; SeD_A0651; phage(gi219681256) | 4e-31 | Click |
| 49 | complement(653125..653376) | PHAGE_Salmon_ST160: Mnt; SeD_A0652; phage(gi318065963) | 3e-41 | Click |
| 50 | 653512..655515 | PHAGE_Salmon_ST160: Gp9; SeD_A0653; phage(gi318065964) | 0.0 | Click |
| 51 | complement(655574..657031) | PHAGE_Salmon_ST160: GtrC; SeD_A0654; phage(gi318065902) | 0.0 | Click |
| 52 | complement(657021..657953) | PHAGE_Salmon_ST160: GtrB; SeD_A0655; phage(gi318065903) | 2e-178 | Click |
| 53 | complement(657950..658312) | PHAGE_Salmon_ST160: GtrA; SeD_A0656; phage(gi318065904) | 7e-66 | Click |
| 54 | 658606..658646 | attR TCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCAGGGCGCGC | N/A | Click |
| 55 | complement(659796..661436) | PHAGE_Salmon_epsilon34: GtrC; putative membrane protein; SeD_A0658; phage(gi221328637) | 1e-92 | Click |
| 56 | complement(661429..662355) | PHAGE_Salmon_ST160: GtrB; SeD_A0659; phage(gi318065903) | 8e-169 | Click |
| 57 | complement(662352..662714) | PHAGE_Salmon_ST160: GtrA; SeD_A0660; phage(gi318065904) | 3e-63 | Click |
Region 2, total : 9 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 985337..985350 | attL TTTCCGCCAGCTCA | N/A | Click |
| 2 | 997271..998929 | PHAGE_Entero_P2: Old; SeD_A1006; phage(gi9630369) | 8e-06 | Click |
| 3 | complement(998926..999876) | hypothetical protein; SeD_A1007 | N/A | Click |
| 4 | 1000022..1001140 | PHAGE_Cronob_ENT47670: putative tail protein; SeD_A1008; phage(gi431810494) | 5e-05 | Click |
| 5 | 1001137..1003083 | PHAGE_Plankt_PaV_LD: ABC transporter; SeD_A1009; phage(gi371496158) | 7e-41 | Click |
| 6 | 1003115..1003258 | hypothetical protein; SeD_A1010 | N/A | Click |
| 7 | complement(1003213..1003434) | PHAGE_Lactoc_bIL312: Csp; SeD_A1011; phage(gi13095918) | 5e-14 | Click |
| 8 | 1003758..1004078 | PHAGE_Cronob_vB_CsaM_GAP32: ATP-dependent Clp protease; SeD_A1012; phage(gi414087232) | 3e-05 | Click |
| 9 | 1004109..1006385 | PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; SeD_A1013; phage(gi15800640) | 0.0 | Click |
| 10 | complement(1006957..1007334) | PROPHAGE_Escher_CFT073: P4 family integrase; SeD_A1014; phage(gi26248244) | 2e-48 | Click |
| 11 | 1014145..1014158 | attR TTTCCGCCAGCTCA | N/A | Click |
Region 3, total : 30 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1064775..1064788 | attL CTGAAAAATCTCTC | N/A | Click |
| 2 | complement(1078187..1079527) | PHAGE_Gifsy_2: bacteriophage integrase; SeD_A1074; phage(gi169257268) | 0.0 | Click |
| 3 | complement(1079524..1079772) | PHAGE_Gifsy_2: bacteriophage excisionase; SeD_A1075; phage(gi169257269) | 1e-43 | Click |
| 4 | complement(1079813..1080052) | PHAGE_Gifsy_2: hypothetical protein STM1007.Gifsy2; SeD_A1076; phage(gi169257270) | 7e-40 | Click |
| 5 | complement(1080095..1080571) | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SeD_A1077; phage(gi169257271) | 2e-83 | Click |
| 6 | complement(1081217..1084405) | PHAGE_Gifsy_2: putatitive bacteriophage exodeoxyribonuclease VIII; SeD_A1078; phage(gi169257272) | 0.0 | Click |
| 7 | complement(1084546..1084716) | PHAGE_Gifsy_2: hypothetical protein STM1010.1n.Gifsy2; SeD_A1079; phage(gi169257274) | 1e-11 | Click |
| 8 | complement(1084709..1084825) | PHAGE_Gifsy_2: hypothetical protein STM1010.2n.Gifsy2; SeD_A1080; phage(gi169257275) | 3e-15 | Click |
| 9 | 1086076..1086225 | PHAGE_Gifsy_2: bacteriophage transcriptional activator; Lambda gpCII analog; SeD_A1081; phage(gi169257278) | 2e-21 | Click |
| 10 | 1086216..1086332 | hypothetical protein; SeD_A1082 | N/A | Click |
| 11 | 1086310..1087293 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; Lambda gpo homolog; SeD_A1083; phage(gi169257279) | 0.0 | Click |
| 12 | 1087296..1088045 | PHAGE_Gifsy_2: bacteriophage DNA replication protein; SeD_A1084; phage(gi169257280) | 1e-141 | Click |
| 13 | 1088086..1088403 | PHAGE_Gifsy_2: hypothetical protein STM1016.Gifsy2; SeD_A1085; phage(gi169257281) | 3e-54 | Click |
| 14 | 1088400..1088924 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SeD_A1086; phage(gi169257282) | 1e-33 | Click |
| 15 | 1088924..1089397 | PHAGE_Pectob_ZF40: putative methylase; SeD_A1087; phage(gi422936660) | 2e-67 | Click |
| 16 | 1089401..1089973 | PHAGE_Salmon_vB_SemP_Emek: Eaa1; SeD_A1088; phage(gi399498822) | 9e-54 | Click |
| 17 | 1090178..1090333 | PHAGE_Salmon_SPN3UB: hypothetical protein; SeD_A1089; phage(gi423262434) | 2e-24 | Click |
| 18 | 1090489..1090728 | PHAGE_Gifsy_2: bacteriophage damage-inducible protein DinI; SeD_A1090; phage(gi169257284) | 2e-38 | Click |
| 19 | 1091063..1091665 | PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; SeD_A1091; phage(gi169257286) | 9e-110 | Click |
| 20 | 1091665..1091871 | PHAGE_Gifsy_2: hypothetical protein STM1021.1n.Gifsy2; SeD_A1092; phage(gi169257287) | 1e-35 | Click |
| 21 | 1091874..1092485 | PHAGE_Gifsy_2: NinG; SeD_A1093; phage(gi169257288) | 5e-114 | Click |
| 22 | 1092618..1093415 | PHAGE_Gifsy_2: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; SeD_A1094; phage(gi169257290) | 1e-153 | Click |
| 23 | 1093814..1094161 | PHAGE_Gifsy_2: bacteriophage lysis protein; holin; SeD_A1095; phage(gi169257295) | 2e-10 | Click |
| 24 | 1094164..1094778 | PHAGE_Salmon_ST64B: lytic enzyme (putative glycohydrolase); SeD_A1096; phage(gi23505496) | 2e-108 | Click |
| 25 | 1094775..1095326 | PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; SeD_A1097; phage(gi16765210) | 1e-20 | Click |
| 26 | 1095613..1095729 | hypothetical protein; SeD_A1098 | N/A | Click |
| 27 | 1095791..1096765 | PHAGE_Burkho_BcepMigl: terminase small subunit; SeD_A1099; phage(gi431809885) | 3e-40 | Click |
| 28 | 1096755..1098026 | PHAGE_Salmon_SSU5: putative terminase large subunit; SeD_A1100; phage(gi390013837) | 8e-16 | Click |
| 29 | 1098026..1099456 | hypothetical protein; SeD_A1101 | N/A | Click |
| 30 | 1099428..1100303 | hypothetical protein; SeD_A1102 | N/A | Click |
| 31 | 1100304..1101878 | PHAGE_Burkho_Bcep1: gp18; SeD_A1103; phage(gi38638625) | 7e-22 | Click |
| 32 | 1104704..1104717 | attR CTGAAAAATCTCTC | N/A | Click |
Region 4, total : 50 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1342522..1342534 | attL GCATTAGCCTTTT | N/A | Click |
| 2 | complement(1351456..1352535) | PHAGE_Entero_mEp235: integrase; SeD_A1379; phage(gi428781836) | 3e-75 | Click |
| 3 | complement(1352849..1353085) | hypothetical protein; SeD_A1380 | N/A | Click |
| 4 | complement(1353376..1353561) | hypothetical protein; SeD_A1381 | N/A | Click |
| 5 | complement(1353608..1354438) | PHAGE_Entero_epsilon15: RecT; SeD_A1382; phage(gi30387413) | 3e-80 | Click |
| 6 | complement(1354431..1357121) | PHAGE_Erwini_phiEt88: exodeoxyribonuclease; SeD_A1383; phage(gi327198600) | 3e-86 | Click |
| 7 | complement(1357262..1357597) | hypothetical protein; SeD_A1384 | N/A | Click |
| 8 | complement(1357673..1357879) | PHAGE_Escher_P13374: host killing protein; SeD_A1385; phage(gi410491620) | 1e-08 | Click |
| 9 | complement(1357883..1358158) | hypothetical protein; SeD_A1386 | N/A | Click |
| 10 | complement(1359176..1359373) | PHAGE_Salmon_SPN3UB: putative CI; SeD_A1387; phage(gi423262424) | 1e-06 | Click |
| 11 | 1359914..1360408 | hypothetical protein; SeD_A1388 | N/A | Click |
| 12 | 1360455..1361453 | PHAGE_Escher_TL_2011b: hypothetical protein; SeD_A1389; phage(gi418487646) | 3e-33 | Click |
| 13 | 1361485..1361907 | PHAGE_Escher_HK639: replication protein 14; SeD_A1390; phage(gi356870655) | 6e-30 | Click |
| 14 | complement(1362602..1363663) | PHAGE_Pseudo_MP1412: diguanylate-cyclase GGDEF domain; SeD_A1391; phage(gi399529005) | 2e-06 | Click |
| 15 | 1363988..1363999 | attL TATCCATAAATA | N/A | Click |
| 16 | 1364141..1366108 | PHAGE_Parame_FR483: hypothetical protein FR483_N003L; SeD_A1392; phage(gi155370101) | 3e-128 | Click |
| 17 | complement(1366265..1366390) | hypothetical protein; SeD_A1393 | N/A | Click |
| 18 | 1366827..1367045 | PHAGE_Salmon_SPN3UB: hypothetical protein; SeD_A1394; phage(gi423262436) | 3e-08 | Click |
| 19 | 1367109..1367708 | PHAGE_Gifsy_2: hypothetical protein STM1020.Gifsy2; SeD_A1395; phage(gi169257286) | 1e-55 | Click |
| 20 | 1367705..1367932 | PHAGE_Gifsy_2: NinG; SeD_A1396; phage(gi169257288) | 6e-17 | Click |
| 21 | 1368062..1368709 | PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; SeD_A1397; phage(gi169257244) | 1e-82 | Click |
| 22 | 1368806..1369330 | hypothetical protein; SeD_A1398 | N/A | Click |
| 23 | 1369591..1369707 | hypothetical protein; SeD_A1399 | N/A | Click |
| 24 | complement(1370514..1370987) | PHAGE_Gifsy_2: bacteriophage virulence determinant; GtgA; SeD_A1400; phage(gi169257294) | 7e-89 | Click |
| 25 | 1371470..1371805 | PHAGE_Gifsy_2: bacteriophage lysis protein; holin; SeD_A1401; phage(gi169257295) | 3e-59 | Click |
| 26 | 1371792..1372241 | PHAGE_Gifsy_2: bacteriophage lysis protein; endolysin; lysozyme; SeD_A1402; phage(gi169257296) | 9e-83 | Click |
| 27 | 1372238..1372738 | PHAGE_Gifsy_2: bacteriophage lysis protein; Lambda gpRz homolog; SeD_A1403; phage(gi169257297) | 1e-86 | Click |
| 28 | 1372946..1373479 | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, small subunit; SeD_A1404; phage(gi169257298) | 1e-95 | Click |
| 29 | 1373433..1375574 | PHAGE_Gifsy_2: bacteriophage DNA packaging protein; terminase, large subunit; SeD_A1405; phage(gi169257299) | 0.0 | Click |
| 30 | 1375571..1375777 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SeD_A1406; phage(gi169257300) | 1e-31 | Click |
| 31 | 1375774..1377321 | PHAGE_Gifsy_2: bacteriophage portal protein; SeD_A1407; phage(gi169257301) | 0.0 | Click |
| 32 | 1377272..1379326 | PHAGE_Gifsy_2: bacteriophage Clp protease involved in capsid processing; SeD_A1408; phage(gi169257302) | 0.0 | Click |
| 33 | 1379417..1379740 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SeD_A1409; phage(gi169257303) | 3e-55 | Click |
| 34 | 1379733..1380032 | PHAGE_Gifsy_2: conserved hypothetical bacteriophage protein; SeD_A1410; phage(gi169257304) | 6e-52 | Click |
| 35 | 1380013..1380579 | PHAGE_Gifsy_2: bacteriophage morphogenesis protein; Lambda gpZ homolog; SeD_A1411; phage(gi169257305) | 6e-103 | Click |
| 36 | 1380576..1380977 | PHAGE_Gifsy_2: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; SeD_A1412; phage(gi169257306) | 3e-71 | Click |
| 37 | 1380989..1381738 | PHAGE_Gifsy_2: bacteriophage major tail protein; Lambda gpV homolog; SeD_A1413; phage(gi169257307) | 7e-141 | Click |
| 38 | 1381784..1382182 | PHAGE_Gifsy_2: bacteriophage tail assembly chaperone; Lambda gpG homolog; SeD_A1414; phage(gi169257308) | 3e-69 | Click |
| 39 | 1382245..1382508 | PHAGE_Gifsy_2: bacteriophage tail assembly chapterone - part of G+G' frameshift hybrid protein ; Lambda gpT homolog; SeD_A1415; phage(gi169257309) | 4e-43 | Click |
| 40 | 1382489..1385575 | PHAGE_Gifsy_2: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; SeD_A1416; phage(gi169257310) | 0.0 | Click |
| 41 | 1385572..1385904 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpM homolog; SeD_A1417; phage(gi169257311) | 9e-61 | Click |
| 42 | 1386003..1386500 | PHAGE_Gifsy_2: bacteriophage virulence determinant; Lom homolog; SeD_A1418; phage(gi169257312) | 3e-92 | Click |
| 43 | complement(1386617..1387150) | PHAGE_Gifsy_2: bacteriophage virulence determinant; superoxide dismutase precursor; SeD_A1419; phage(gi169257313) | 3e-102 | Click |
| 44 | 1387240..1387935 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpL homolog; SeD_A1420; phage(gi169257314) | 8e-135 | Click |
| 45 | 1387945..1388676 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpK homolog; SeD_A1421; phage(gi169257315) | 2e-150 | Click |
| 46 | 1388784..1389284 | PHAGE_Gifsy_2: bacteriophage tail tip assembly protein; Lambda gpI homolog; SeD_A1422; phage(gi169257316) | 2e-88 | Click |
| 47 | 1392747..1392989 | PHAGE_Gifsy_2: hypothetical protein STM1049.2n.Gifsy2; SeD_A1426; phage(gi169257319) | 2e-39 | Click |
| 48 | 1393043..1395460 | PHAGE_Gifsy_2: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; SeD_A1427; phage(gi169257320) | 0.0 | Click |
| 49 | 1395460..1396029 | PHAGE_Gifsy_2: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; SeD_A1428; phage(gi169257321) | 2e-99 | Click |
| 50 | complement(1396231..1396953) | guanine nucleotide exchange factor SopE; SeD_A1429 | N/A | Click |
| 51 | complement(1397433..1398233) | hypothetical protein; SeD_A1431 | N/A | Click |
| 52 | complement(1399187..1400266) | PHAGE_Entero_mEp235: integrase; SeD_A1432; phage(gi428781836) | 2e-74 | Click |
| 53 | 1407428..1407439 | attR TATCCATAAATA | N/A | Click |
| 54 | 1407500..1407512 | attR GCATTAGCCTTTT | N/A | Click |
Region 5, total : 62 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2138996..2139007 | attL GAACCCCACGCT | N/A | Click |
| 2 | complement(2143449..2144816) | PROPHAGE_Shewan_MR-1: IS110 family transposase; SeD_A2242; phage(gi24375433) | 8e-62 | Click |
| 3 | complement(2144933..2145751) | hypothetical protein; SeD_A2243 | N/A | Click |
| 4 | 2146813..2146827 | attL CGGTTTTCGAGACCG | N/A | Click |
| 5 | complement(2147094..2147315) | PHAGE_Salmon_ST64B: DNA invertase pin protein; SeD_A2245; phage(gi23505471) | 7e-38 | Click |
| 6 | 2147528..2148535 | PHAGE_Salmon_ST64B: hypothetical protein sb26; SeD_A2246; phage(gi23505470) | 0.0 | Click |
| 7 | complement(2148536..2148685) | PHAGE_Erwini_ENT90: tail sheath protein; SeD_A2247; phage(gi431810939) | 2e-05 | Click |
| 8 | complement(2148820..2149389) | PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; SeD_A2248; phage(gi23505469) | 2e-109 | Click |
| 9 | complement(2149389..2150951) | PHAGE_Salmon_ST64B: tail protein; SeD_A2249; phage(gi23505468) | 0.0 | Click |
| 10 | complement(2150938..2151525) | PHAGE_Salmon_ST64B: putative tail protein; SeD_A2250; phage(gi23505467) | 2e-115 | Click |
| 11 | complement(2151528..2152607) | PHAGE_Salmon_ST64B: putative head assembly protein; SeD_A2251; phage(gi23505465) | 3e-96 | Click |
| 12 | complement(2152600..2153013) | PHAGE_Salmon_ST64B: putative tail protein; SeD_A2252; phage(gi23505464) | 2e-77 | Click |
| 13 | complement(2153018..2153551) | PHAGE_Salmon_ST64B: putative base plate assembly protein; SeD_A2253; phage(gi23505463) | 3e-99 | Click |
| 14 | complement(2154605..2155945) | PHAGE_Salmon_ST64B: tail/DNA circulation protein; SeD_A2255; phage(gi23505461) | 0.0 | Click |
| 15 | complement(2155979..2157907) | PHAGE_Salmon_ST64B: tail protein; SeD_A2256; phage(gi23505460) | 0.0 | Click |
| 16 | complement(2157992..2158318) | PHAGE_Salmon_ST64B: hypothetical protein sb15; SeD_A2257; phage(gi23505501) | 1e-55 | Click |
| 17 | complement(2158315..2158671) | PHAGE_Salmon_ST64B: Tail tube protein; SeD_A2258; phage(gi23505459) | 8e-65 | Click |
| 18 | complement(2158671..2160167) | PHAGE_Salmon_ST64B: Tail Sheath protein; SeD_A2259; phage(gi23505458) | 0.0 | Click |
| 19 | complement(2160157..2160321) | PHAGE_Salmon_ST64B: hypothetical protein sb12; SeD_A2260; phage(gi23505457) | 9e-27 | Click |
| 20 | complement(2160325..2160885) | PHAGE_Salmon_ST64B: hypothetical protein sb11; SeD_A2261; phage(gi23505456) | 8e-107 | Click |
| 21 | complement(2160882..2161394) | PHAGE_Salmon_ST64B: hypothetical protein sb10; SeD_A2262; phage(gi23505455) | 3e-97 | Click |
| 22 | complement(2161366..2161770) | PHAGE_Salmon_ST64B: hypothetical protein sb9; SeD_A2263; phage(gi23505454) | 4e-73 | Click |
| 23 | complement(2161767..2162090) | PHAGE_Salmon_ST64B: hypothetical protein sb8; SeD_A2264; phage(gi23505453) | 5e-57 | Click |
| 24 | complement(2162093..2162293) | PHAGE_Salmon_ST64B: hypothetical protein sb7; SeD_A2265; phage(gi23505452) | 2e-31 | Click |
| 25 | complement(2162344..2163549) | PHAGE_Salmon_ST64B: Major capsid protein precursor; SeD_A2266; phage(gi23505451) | 0.0 | Click |
| 26 | complement(2164192..2165433) | PHAGE_Salmon_ST64B: Portal Protein; SeD_A2269; phage(gi23505449) | 0.0 | Click |
| 27 | complement(2165433..2165615) | PHAGE_Salmon_ST64B: putative integral membrane protein; SeD_A2270; phage(gi23505448) | 1e-29 | Click |
| 28 | complement(2165627..2167360) | PHAGE_Salmon_ST64B: Terminase large subunit; SeD_A2271; phage(gi23505447) | 0.0 | Click |
| 29 | complement(2167357..2167851) | PHAGE_Salmon_ST64B: terminase small subunit; SeD_A2272; phage(gi23505446) | 9e-93 | Click |
| 30 | complement(2167978..2168328) | PHAGE_Salmon_ST64B: hypothetical protein sb56; SeD_A2273; phage(gi23505500) | 3e-65 | Click |
| 31 | complement(2168456..2168755) | hypothetical protein; SeD_A2274 | N/A | Click |
| 32 | complement(2169416..2169808) | PHAGE_Entero_SfV: putative Rz lytic protein; SeD_A2275; phage(gi19549038) | 3e-62 | Click |
| 33 | complement(2169792..2170268) | PHAGE_Entero_SfV: lysin; SeD_A2276; phage(gi19549037) | 3e-86 | Click |
| 34 | complement(2170272..2170619) | PHAGE_Salmon_ST64B: lysis protein (holin); SeD_A2277; phage(gi23505495) | 3e-23 | Click |
| 35 | complement(2171282..2172034) | PHAGE_Entero_SfV: antitermination protein Q; SeD_A2278; phage(gi19549033) | 2e-137 | Click |
| 36 | complement(2172048..2173043) | PHAGE_Salmon_ST64B: hypothetical protein sb47; SeD_A2279; phage(gi23505491) | 4e-138 | Click |
| 37 | complement(2173045..2173905) | PHAGE_Salmon_ST64B: hypothetical protein sb46; SeD_A2280; phage(gi23505490) | 7e-163 | Click |
| 38 | complement(2173922..2174311) | PHAGE_Salmon_ST64B: holiday-junction resolvase; SeD_A2281; phage(gi23505489) | 7e-66 | Click |
| 39 | complement(2174320..2175201) | PHAGE_Entero_P1: Dmt; SeD_A2282; phage(gi46401691) | 9e-71 | Click |
| 40 | complement(2175198..2175671) | PHAGE_Salmon_ST64B: putative transcriptional activator; SeD_A2283; phage(gi23505487) | 1e-30 | Click |
| 41 | complement(2175668..2176642) | PHAGE_Entero_mEp390: hypothetical protein; SeD_A2284; phage(gi428782706) | 2e-41 | Click |
| 42 | complement(2176639..2176863) | PHAGE_Entero_mEp460: hypothetical protein; SeD_A2285; phage(gi428782358) | 1e-35 | Click |
| 43 | complement(2176860..2178002) | PHAGE_Salmon_ST64B: putative antirepressor; SeD_A2286; phage(gi23505485) | 2e-158 | Click |
| 44 | complement(2177999..2178553) | PHAGE_Salmon_ST64B: hypothetical protein sb40; SeD_A2287; phage(gi23505484) | 4e-47 | Click |
| 45 | complement(2178582..2178806) | PHAGE_Salmon_ST64B: DNA binding protein; SeD_A2288; phage(gi23505483) | 2e-36 | Click |
| 46 | 2179917..2180168 | hypothetical protein; SeD_A2290 | N/A | Click |
| 47 | complement(2180363..2180608) | hypothetical protein; SeD_A2291 | N/A | Click |
| 48 | complement(2180598..2181161) | PHAGE_Entero_cdtI: hypothetical protein PcdtI_gp40; SeD_A2293; phage(gi148609422) | 7e-10 | Click |
| 49 | 2181160..2181516 | PHAGE_Salmon_ST64B: hypothetical protein sb37; SeD_A2292; phage(gi23505481) | 3e-63 | Click |
| 50 | 2181574..2182401 | PHAGE_Salmon_ST64B: hypothetical protein sb36; SeD_A2294; phage(gi23505480) | 3e-152 | Click |
| 51 | 2182538..2183077 | PHAGE_Salmon_ST64B: hypothetical protein sb35; SeD_A2295; phage(gi23505479) | 7e-100 | Click |
| 52 | 2183148..2183885 | PHAGE_Salmon_vB_SemP_Emek: hypothetical protein; SeD_A2296; phage(gi399498826) | 1e-12 | Click |
| 53 | 2183882..2184358 | PHAGE_Pectob_ZF40: putative methylase; SeD_A2297; phage(gi422936660) | 5e-69 | Click |
| 54 | 2184362..2185111 | PHAGE_Salmon_ST64B: hypothetical protein sb31; SeD_A2298; phage(gi23505475) | 2e-19 | Click |
| 55 | 2185108..2185677 | PHAGE_Salmon_ST64B: Endodeoxyribonuclease; SeD_A2299; phage(gi23505474) | 2e-103 | Click |
| 56 | 2185717..2185944 | PHAGE_Salmon_ST64B: hypothetical protein sb29; SeD_A2300; phage(gi23505473) | 1e-38 | Click |
| 57 | 2185946..2186935 | PHAGE_Salmon_ST64B: Integrase protein; SeD_A2301; phage(gi23505472) | 0.0 | Click |
| 58 | complement(2187048..2187139) | tRNA | N/A | Click |
| 59 | 2187096..2187110 | attR CGGTTTTCGAGACCG | N/A | Click |
| 60 | 2187227..2188024 | hypothetical protein; SeD_A2303 | N/A | Click |
| 61 | 2188124..2188201 | tRNA | N/A | Click |
| 62 | 2188380..2189654 | PROPHAGE_Shigel_301: putative P4-type integrase; SeD_A2305; phage(gi24114228) | 2e-139 | Click |
| 63 | complement(2189726..2189977) | PHAGE_Clostr_phiMMP02: hypothetical protein; SeD_A2306; phage(gi414090415) | 2e-05 | Click |
| 64 | complement(2190456..2190953) | PHAGE_Choris_'L': N1R/p28-like protein; SeD_A2307; phage(gi506498384) | 5e-06 | Click |
| 65 | complement(2191315..2191878) | hypothetical protein; SeD_A2308 | N/A | Click |
| 66 | complement(2191945..2192058) | hypothetical protein; SeD_A2309 | N/A | Click |
| 67 | 2192289..2193170 | PHAGE_Ectrom_virus: EVM128; SeD_A2310; phage(gi22164734) | 5e-05 | Click |
| 68 | 2200331..2200342 | attR GAACCCCACGCT | N/A | Click |
Region 6, total : 29 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2922988..2923131 | PHAGE_Salmon_RE_2010: hypothetical protein; SeD_A3024; phage(gi418489728) | 2e-21 | Click |
| 2 | complement(2923345..2924445) | PHAGE_Salmon_RE_2010: gene D protein; SeD_A3025; phage(gi418489726) | 0.0 | Click |
| 3 | complement(2924442..2924927) | PHAGE_Salmon_RE_2010: tail protein; SeD_A3026; phage(gi418489725) | 2e-85 | Click |
| 4 | complement(2924924..2927731) | PHAGE_Salmon_RE_2010: tail tape measure protein; SeD_A3027; phage(gi418489724) | 0.0 | Click |
| 5 | complement(2927858..2928160) | PHAGE_Salmon_RE_2010: tail protein E; SeD_A3029; phage(gi418489722) | 2e-47 | Click |
| 6 | complement(2928215..2928730) | PHAGE_Salmon_RE_2010: major tail tube protein; SeD_A3030; phage(gi418489721) | 3e-94 | Click |
| 7 | complement(2928740..2929912) | PHAGE_Salmon_RE_2010: major tail sheath protein; SeD_A3031; phage(gi418489720) | 0.0 | Click |
| 8 | complement(2930043..2930570) | PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; SeD_A3032; phage(gi23505469) | 2e-12 | Click |
| 9 | complement(2930573..2932258) | PHAGE_Salmon_RE_2010: tail fiber protein; SeD_A3033; phage(gi418489713) | 2e-127 | Click |
| 10 | complement(2932255..2932860) | PHAGE_Salmon_RE_2010: tail protein I; SeD_A3034; phage(gi418489712) | 1e-117 | Click |
| 11 | complement(2932853..2933761) | PHAGE_Salmon_RE_2010: baseplate assembly protein J; SeD_A3035; phage(gi418489711) | 4e-162 | Click |
| 12 | complement(2933748..2934107) | PHAGE_Salmon_RE_2010: baseplate wedge subunit; SeD_A3036; phage(gi418489710) | 1e-54 | Click |
| 13 | complement(2934104..2934682) | PHAGE_Salmon_RE_2010: baseplate assembly protein V; SeD_A3037; phage(gi418489709) | 6e-95 | Click |
| 14 | 2934778..2935644 | PHAGE_Salmon_RE_2010: hypothetical protein; SeD_A3038; phage(gi418489708) | 6e-37 | Click |
| 15 | complement(2935671..2936117) | PHAGE_Salmon_RE_2010: tail completion protein; SeD_A3039; phage(gi418489707) | 2e-63 | Click |
| 16 | complement(2936110..2936541) | PHAGE_Salmon_RE_2010: tail protein; SeD_A3040; phage(gi418489706) | 1e-73 | Click |
| 17 | complement(2936637..2937065) | PHAGE_Salmon_RE_2010: lysozyme subunit B; SeD_A3041; phage(gi418489705) | 2e-54 | Click |
| 18 | complement(2937062..2937439) | hypothetical protein; SeD_A3042 | N/A | Click |
| 19 | complement(2937441..2937953) | PHAGE_Salmon_RE_2010: lysozyme; SeD_A3043; phage(gi418489704) | 4e-89 | Click |
| 20 | complement(2937934..2938149) | PHAGE_Salmon_RE_2010: lysis protein S; SeD_A3044; phage(gi418489703) | 6e-29 | Click |
| 21 | complement(2938153..2938356) | PHAGE_Salmon_RE_2010: tail component protein; SeD_A3045; phage(gi418489702) | 6e-33 | Click |
| 22 | complement(2938356..2938820) | PHAGE_Salmon_RE_2010: head completion-stabilization protein; SeD_A3046; phage(gi418489701) | 2e-76 | Click |
| 23 | complement(2938916..2939566) | PHAGE_Salmon_RE_2010: terminase endonuclease subunit; SeD_A3047; phage(gi418489700) | 2e-115 | Click |
| 24 | complement(2939570..2940628) | PHAGE_Salmon_RE_2010: major capsid protein; SeD_A3048; phage(gi418489699) | 0.0 | Click |
| 25 | complement(2940645..2941478) | PHAGE_Salmon_RE_2010: capsid scaffolding protein; SeD_A3049; phage(gi418489698) | 6e-130 | Click |
| 26 | 2941621..2943387 | PHAGE_Salmon_RE_2010: terminase ATPase subunit; SeD_A3050; phage(gi418489697) | 0.0 | Click |
| 27 | 2943387..2944418 | PHAGE_Salmon_RE_2010: capsid packaging protein; SeD_A3051; phage(gi418489696) | 6e-171 | Click |
| 28 | complement(2944415..2945194) | hypothetical protein; SeD_A3052 | N/A | Click |
| 29 | complement(2945199..2946359) | PHAGE_Entero_RB49: hypothetical protein RB49p187; SeD_A3053; phage(gi33620548) | 1e-06 | Click |
Region 7, total : 47 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2922939..2922954 | attL CAAATAAAACAAGGGG | N/A | Click |
| 2 | 2922988..2923131 | PHAGE_Salmon_RE_2010: hypothetical protein; SeD_A3024; phage(gi418489728) | 2e-21 | Click |
| 3 | complement(2923345..2924445) | PHAGE_Salmon_RE_2010: gene D protein; SeD_A3025; phage(gi418489726) | 0.0 | Click |
| 4 | complement(2924442..2924927) | PHAGE_Salmon_RE_2010: tail protein; SeD_A3026; phage(gi418489725) | 2e-85 | Click |
| 5 | complement(2924924..2927731) | PHAGE_Salmon_RE_2010: tail tape measure protein; SeD_A3027; phage(gi418489724) | 0.0 | Click |
| 6 | complement(2927858..2928160) | PHAGE_Salmon_RE_2010: tail protein E; SeD_A3029; phage(gi418489722) | 2e-47 | Click |
| 7 | complement(2928215..2928730) | PHAGE_Salmon_RE_2010: major tail tube protein; SeD_A3030; phage(gi418489721) | 3e-94 | Click |
| 8 | complement(2928740..2929912) | PHAGE_Salmon_RE_2010: major tail sheath protein; SeD_A3031; phage(gi418489720) | 0.0 | Click |
| 9 | complement(2930043..2930570) | PHAGE_Salmon_ST64B: Probable tail fiber assembly protein; SeD_A3032; phage(gi23505469) | 2e-12 | Click |
| 10 | complement(2930573..2932258) | PHAGE_Salmon_RE_2010: tail fiber protein; SeD_A3033; phage(gi418489713) | 2e-127 | Click |
| 11 | complement(2932255..2932860) | PHAGE_Salmon_RE_2010: tail protein I; SeD_A3034; phage(gi418489712) | 1e-117 | Click |
| 12 | complement(2932853..2933761) | PHAGE_Salmon_RE_2010: baseplate assembly protein J; SeD_A3035; phage(gi418489711) | 4e-162 | Click |
| 13 | complement(2933748..2934107) | PHAGE_Salmon_RE_2010: baseplate wedge subunit; SeD_A3036; phage(gi418489710) | 1e-54 | Click |
| 14 | complement(2934104..2934682) | PHAGE_Salmon_RE_2010: baseplate assembly protein V; SeD_A3037; phage(gi418489709) | 6e-95 | Click |
| 15 | 2934778..2935644 | PHAGE_Salmon_RE_2010: hypothetical protein; SeD_A3038; phage(gi418489708) | 6e-37 | Click |
| 16 | complement(2935671..2936117) | PHAGE_Salmon_RE_2010: tail completion protein; SeD_A3039; phage(gi418489707) | 2e-63 | Click |
| 17 | complement(2936110..2936541) | PHAGE_Salmon_RE_2010: tail protein; SeD_A3040; phage(gi418489706) | 1e-73 | Click |
| 18 | complement(2936637..2937065) | PHAGE_Salmon_RE_2010: lysozyme subunit B; SeD_A3041; phage(gi418489705) | 2e-54 | Click |
| 19 | complement(2937062..2937439) | hypothetical protein; SeD_A3042 | N/A | Click |
| 20 | complement(2937441..2937953) | PHAGE_Salmon_RE_2010: lysozyme; SeD_A3043; phage(gi418489704) | 4e-89 | Click |
| 21 | complement(2937934..2938149) | PHAGE_Salmon_RE_2010: lysis protein S; SeD_A3044; phage(gi418489703) | 6e-29 | Click |
| 22 | complement(2938153..2938356) | PHAGE_Salmon_RE_2010: tail component protein; SeD_A3045; phage(gi418489702) | 6e-33 | Click |
| 23 | complement(2938356..2938820) | PHAGE_Salmon_RE_2010: head completion-stabilization protein; SeD_A3046; phage(gi418489701) | 2e-76 | Click |
| 24 | complement(2938916..2939566) | PHAGE_Salmon_RE_2010: terminase endonuclease subunit; SeD_A3047; phage(gi418489700) | 2e-115 | Click |
| 25 | complement(2939570..2940628) | PHAGE_Salmon_RE_2010: major capsid protein; SeD_A3048; phage(gi418489699) | 0.0 | Click |
| 26 | complement(2940645..2941478) | PHAGE_Salmon_RE_2010: capsid scaffolding protein; SeD_A3049; phage(gi418489698) | 6e-130 | Click |
| 27 | 2941621..2943387 | PHAGE_Salmon_RE_2010: terminase ATPase subunit; SeD_A3050; phage(gi418489697) | 0.0 | Click |
| 28 | 2943387..2944418 | PHAGE_Salmon_RE_2010: capsid packaging protein; SeD_A3051; phage(gi418489696) | 6e-171 | Click |
| 29 | complement(2944415..2945194) | hypothetical protein; SeD_A3052 | N/A | Click |
| 30 | complement(2945199..2946359) | PHAGE_Entero_RB49: hypothetical protein RB49p187; SeD_A3053; phage(gi33620548) | 1e-06 | Click |
| 31 | 2946780..2947658 | putative lipoprotein; SeD_A3054 | N/A | Click |
| 32 | complement(2947796..2947915) | hypothetical protein; SeD_A3055 | N/A | Click |
| 33 | complement(2948137..2948325) | PHAGE_Salmon_RE_2010: hypothetical protein; SeD_A3056; phage(gi418489693) | 3e-25 | Click |
| 34 | complement(2948481..2950877) | PHAGE_Salmon_RE_2010: replication protein; SeD_A3057; phage(gi418489692) | 0.0 | Click |
| 35 | complement(2950874..2951731) | PHAGE_Salmon_RE_2010: DNA adenine methyltransferase; SeD_A3058; phage(gi418489691) | 4e-167 | Click |
| 36 | complement(2951728..2951955) | PHAGE_Salmon_RE_2010: zinc-finger containing protein; SeD_A3059; phage(gi418489690) | 5e-35 | Click |
| 37 | complement(2951955..2952188) | PHAGE_Salmon_RE_2010: hypothetical protein; SeD_A3060; phage(gi418489689) | 3e-27 | Click |
| 38 | complement(2952256..2952597) | PHAGE_Salmon_RE_2010: hypothetical protein; SeD_A3061; phage(gi418489688) | 3e-51 | Click |
| 39 | 2952910..2953275 | hypothetical protein; SeD_A3062 | N/A | Click |
| 40 | complement(2954010..2954249) | PHAGE_Salmon_RE_2010: excisionase; SeD_A3064; phage(gi418489685) | 1e-22 | Click |
| 41 | 2954594..2954998 | PHAGE_Salmon_RE_2010: repressor; SeD_A3065; phage(gi418489684) | 5e-25 | Click |
| 42 | 2955002..2956027 | PHAGE_Salmon_RE_2010: integrase; SeD_A3066; phage(gi418489683) | 0.0 | Click |
| 43 | 2957279..2958082 | PHAGE_Mannhe_phiMHaA1: hypothetical bacteriophage protein; SeD_A3067; phage(gi109289966) | 2e-63 | Click |
| 44 | 2958592..2958607 | attR CAAATAAAACAAGGGG | N/A | Click |
| 45 | complement(2958878..2959501) | PROPHAGE_Xantho_33913: ISxcC1 transposase; SeD_A3068; phage(gi21231060) | 5e-72 | Click |
| 46 | complement(2959723..2959989) | PROPHAGE_Salmon_LT2: transposase; SeD_A3069; phage(gi16766077) | 6e-44 | Click |
| 47 | 2960332..2960448 | PROPHAGE_Salmon_Ty2: transposase; SeD_A3070; phage(gi29143766) | 2e-15 | Click |
| 48 | 2961074..2962189 | hypothetical protein; SeD_A3071 | N/A | Click |
| 49 | 2962270..2965926 | PHAGE_Bacill_SPBc2: ABC transporter; SeD_A3072; phage(gi9630145) | 2e-25 | Click |