REGION | 1 |
---|---|
REGION_LENGTH | 31.3Kb |
COMPLETENESS(score) | intact(110) |
SPECIFIC_KEYWORD | recombinase,tail,plate |
REGION_POSITION | 99160-130529 |
TRNA_NUM | 1 |
TOTAL_PROTEIN_NUM | 33 |
PHAGE_HIT_PROTEIN_NUM | 30 |
HYPOTHETICAL_PROTEIN_NUM | 2 |
PHAGE+HYPO_PROTEIN_PERCENTAGE | 96.9% |
BACTERIAL_PROTEIN_NUM | 1 |
ATT_SITE_SHOWUP | yes |
PHAGE_SPECIES_NUM | 6 |
MOST_COMMON_PHAGE_NAME | PHAGE_Burkho_phiE202 |
MOST_COMMON_PHAGE_NUM | 25 |
MOST_COMMON_PHAGE_PERCENTAGE | 75.7% |
GC_PERCENTAGE | 68.38% |
Legend:
REGION: the number assigned to the regionREGION_LENGTH: the length of the sequence of that region (in bp)
COMPLETENESS: a prediction of whether the region contains a intact or incomplete prophage based on the above criteria
SPECIFIC_KEYWORD: the specific phage-related keyword(s) found in protein name(s) in the region
PREDICT_INTACT_OR_INCOMPLETE (score): a prediction of whether the region contains an intact or incomplete prophage based on the above criteria (with score in brackets)
REGION_POSITION: the start and end positions of the region on the bacterial chromosome
TRNA_NUM: the number of tRNA genes present in the region
TOTAL_PROTEIN_NUM: the number of ORFs present in the region
PHAGE_HIT_PROTEIN_NUM: the number of proteins in the region with matches in the phage protein database
HYPOTHETICAL_PROTEIN_NUM: the number of hypothetical proteins in the region without a match in the database
PHAGE+HYPO_PROTEIN_PERCENTAGE: the combined percentage of phage proteins and hypothetical proteins in the region
BACTERIAL_PROTEIN_NUM: the number of proteins in the region with matches in the nrfilt database
ATT_SITE_SHOWUP: the putative phage attachment site
PHAGE_SPECIES_NUM: the number of different phages that have similar proteins to those in the region
MOST_COMMON_PHAGE_NAME: the phage with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_NUM: the number of phages with the highest number of proteins most similar to those in the region
MOST_COMMON_PHAGE_PERCENTAGE: the percentage of proteins in PHAGE_HIT_PROTEIN_NUM that are most similar to MOST_COMMON_PHAGE_NAME proteins
GC_PERCENTAGE: the percentage of gc nucleotides of the region