Definition | Clostridium botulinum E3 str. Alaska E43, complete genome. |
---|---|
Accession | NC_010723 |
Length | 3,659,644 |
Legend
Hits against Virus and prophage DB | |
Hits against Bacterial DB or GenBank file |
Region 1, total : 11 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 134781..134793 | attL AAAATTATTTGAA | N/A | Click |
2 | 147624..148220 | PHAGE_Staphy_phiETA3: hypothetical protein phiETA3_gp45; CLH_0124; phage(gi122891829) | 3e-16 | Click |
3 | 148239..149084 | PHAGE_Staphy_phiETA3: major capsid protein; CLH_0125; phage(gi122891830) | 2e-32 | Click |
4 | 149149..149556 | hypothetical protein; CLH_0126 | N/A | Click |
5 | 149558..149803 | hypothetical protein; CLH_0127 | N/A | Click |
6 | complement(149835..150353) | PHAGE_Clostr_PhiS63: gp36; CLH_0128; phage(gi388570662) | 9e-06 | Click |
7 | 150549..150740 | hypothetical protein; CLH_0129 | N/A | Click |
8 | 150758..152896 | PHAGE_Strept_2: primase; CLH_0130; phage(gi273809764) | 1e-23 | Click |
9 | 152920..153180 | hypothetical protein; CLH_0131 | N/A | Click |
10 | 153390..153707 | hypothetical protein; CLH_0132 | N/A | Click |
11 | 153533..153545 | attR AAAATTATTTGAA | N/A | Click |
12 | 153822..154991 | PHAGE_Bacill_phIS3501: phage integrase; CLH_0133; phage(gi422934298) | 5e-31 | Click |
13 | complement(155357..156751) | PHAGE_Acanth_moumouvirus: asparaginyl t-RNA synthetase; CLH_0134; phage(gi441432571) | 2e-90 | Click |
Region 2, total : 31 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 915697..916821 | PHAGE_Cyanop_KBS_S_2A: RNA polymerase sigma factor RpoD; CLH_0881; phage(gi472341467) | 2e-39 | Click |
2 | 916914..917600 | Bcl-2 family protein; CLH_0882 | N/A | Click |
3 | 917718..918509 | hypothetical protein; CLH_0883 | N/A | Click |
4 | 918566..918802 | hypothetical protein; CLH_0884 | N/A | Click |
5 | complement(919288..919749) | PHAGE_Clostr_phiCD27: hypothetical protein phiCD27_gp43; CLH_0885; phage(gi209901280) | 2e-31 | Click |
6 | complement(919767..920132) | PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; CLH_0886; phage(gi397912660) | 1e-07 | Click |
7 | 920387..920896 | PHAGE_Clostr_PhiS63: gp40; CLH_0887; phage(gi388570666) | 1e-36 | Click |
8 | 921657..922073 | PHAGE_Strept_1: hypothetical protein EJ-1p51; CLH_0888; phage(gi39653725) | 7e-07 | Click |
9 | 922063..922218 | hypothetical protein; CLH_0889 | N/A | Click |
10 | 922219..923529 | PHAGE_Strept_1: sheath tail protein; CLH_0890; phage(gi39653727) | 5e-103 | Click |
11 | 923548..924015 | PHAGE_Strept_1: core tail protein; CLH_0891; phage(gi39653728) | 6e-42 | Click |
12 | 924315..924728 | PHAGE_Strept_1: hypothetical protein EJ-1p55; CLH_0892; phage(gi39653729) | 9e-14 | Click |
13 | 924924..926873 | PHAGE_Strept_1: tail length tape measure protein; CLH_0893; phage(gi39653730) | 9e-23 | Click |
14 | 926873..927535 | PHAGE_Strept_1: hypothetical protein EJ-1p57; CLH_0894; phage(gi39653731) | 7e-13 | Click |
15 | 927547..928518 | PHAGE_Strept_1: hypothetical protein EJ-1p58; CLH_0895; phage(gi39653732) | 2e-41 | Click |
16 | 928522..928851 | PHAGE_Clostr_phiC2: hypothetical protein phiC2p23; CLH_0896; phage(gi134287358) | 2e-07 | Click |
17 | 928844..929251 | PHAGE_Strept_1: hypothetical protein EJ-1p60; CLH_0897; phage(gi39653734) | 3e-17 | Click |
18 | 929254..930312 | PHAGE_Strept_1: tail protein; CLH_0898; phage(gi39653735) | 4e-32 | Click |
19 | 930313..932394 | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CLH_0899; phage(gi9631364) | 2e-15 | Click |
20 | 932396..933010 | PHAGE_Clostr_CD119: hypothetical protein CDBPCV119_gp28; CLH_0900; phage(gi90592664) | 5e-19 | Click |
21 | 933025..933825 | hypothetical protein; CLH_0901 | N/A | Click |
22 | 933842..934177 | hypothetical protein; CLH_0902 | N/A | Click |
23 | 934170..934304 | phage protein, XkdX family; CLH_0903 | N/A | Click |
24 | 934418..934618 | UviB homologous protein; CLH_0904 | N/A | Click |
25 | 934757..935551 | PHAGE_Clostr_PhiS63: gp21; CLH_0905; phage(gi388570650) | 2e-37 | Click |
26 | 935699..935863 | surface lipoprotein-related protein; CLH_0906 | N/A | Click |
27 | complement(935886..936452) | PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p012; CLH_0907; phage(gi9630137) | 1e-06 | Click |
28 | 936819..937865 | PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p028; CLH_0908; phage(gi9630153) | 5e-10 | Click |
29 | 937884..938921 | hypothetical protein; CLH_0909 | N/A | Click |
30 | 939071..940180 | PHAGE_Plankt_PaV_LD: ABC transporter; CLH_0910; phage(gi371496158) | 3e-23 | Click |
31 | 940202..941143 | PHAGE_Megavi_lba: hypothetical protein; CLH_0911; phage(gi448825526) | 9e-05 | Click |
Region 3, total : 22 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1841947..1841959 | attL AATATATTTATAA | N/A | Click |
2 | complement(1846045..1847034) | PHAGE_Thermu_26: phage XerD-like integrase; CLH_1697; phage(gi157265417) | 3e-10 | Click |
3 | 1847705..1848184 | YbaK/ebsC protein; CLH_1698 | N/A | Click |
4 | complement(1848507..1849877) | (dimethylallyl)adenosine tRNA methylthiotransferase; CLH_1699 | N/A | Click |
5 | complement(1850114..1850326) | PHAGE_Bacill_SPBc2: putative SPbeta phage repressor; CLH_1700; phage(gi9630190) | 2e-05 | Click |
6 | complement(1850836..1851624) | PHAGE_Pseudo_PAJU2: putative endolysin; CLH_1701; phage(gi209552446) | 8e-18 | Click |
7 | complement(1851682..1851855) | hypothetical protein; CLH_1702 | N/A | Click |
8 | complement(1851868..1852068) | UviB homologous protein; CLH_1703 | N/A | Click |
9 | complement(1852141..1853145) | PHAGE_Pseudo_phiIBB_PF7A: minor capsid protein 10B; CLH_1704; phage(gi326536940) | 8e-08 | Click |
10 | complement(1853192..1854715) | PHAGE_Cronob_phiES15: putative major tail protein; CLH_1705; phage(gi401817602) | 2e-06 | Click |
11 | complement(1855188..1855385) | hypothetical protein; CLH_1706 | N/A | Click |
12 | complement(1855398..1855736) | PHAGE_Antica_nucleopolyhedrovirus: pe38 like protein; CLH_1707; phage(gi116326217) | 4e-05 | Click |
13 | complement(1855752..1857161) | PHAGE_Clostr_phiMMP04: tail fiber; CLH_1708; phage(gi414090463) | 2e-48 | Click |
14 | complement(1857161..1857823) | PHAGE_Entero_2: P2 gpI-like baseplate assembly protein; CLH_1709; phage(gi169936031) | 1e-13 | Click |
15 | complement(1857823..1858974) | PHAGE_Burkho_BcepMu: gp50; CLH_1710; phage(gi48696960) | 4e-28 | Click |
16 | complement(1858967..1859287) | putative GPW/gp25 family protein; CLH_1711 | N/A | Click |
17 | complement(1859290..1859832) | hypothetical protein; CLH_1712 | N/A | Click |
18 | complement(1859837..1860037) | putative phage baseplate assembly protein V; CLH_1713 | N/A | Click |
19 | complement(1860037..1860945) | PHAGE_Burkho_BcepMu: gp47; CLH_1714; phage(gi48696957) | 2e-05 | Click |
20 | complement(1860961..1861173) | hypothetical protein; CLH_1715 | N/A | Click |
21 | complement(1861166..1863364) | PHAGE_Clostr_phiCP13O: phage-related minor tail protein; CLH_1716; phage(gi422935081) | 1e-54 | Click |
22 | complement(1863530..1863853) | hypothetical protein; CLH_1717 | N/A | Click |
23 | complement(1863923..1864444) | PHAGE_Burkho_BcepMu: gp40; CLH_1718; phage(gi48696950) | 7e-09 | Click |
24 | complement(1864444..1865880) | PHAGE_Burkho_BcepMu: gp39; CLH_1719; phage(gi48696949) | 2e-17 | Click |
25 | 1880079..1880091 | attR AATATATTTATAA | N/A | Click |
Region 4, total : 10 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | 1863620..1863631 | attL TCTTTTTACATC | N/A | Click |
2 | complement(1868967..1870100) | PHAGE_Geobac_E2: putative Clp peptidase; CLH_1726; phage(gi148747731) | 3e-36 | Click |
3 | complement(1870180..1871739) | PHAGE_Synech_S_CBS3: lambda-like phage portal protein; CLH_1727; phage(gi331028010) | 5e-40 | Click |
4 | complement(1871750..1871983) | hypothetical protein; CLH_1728 | N/A | Click |
5 | complement(1871999..1873111) | PHAGE_Synech_S_CBS3: large terminase subunit; CLH_1729; phage(gi331028008) | 1e-42 | Click |
6 | complement(1873313..1873819) | PHAGE_Synech_S_CBS3: large terminase subunit; CLH_1730; phage(gi331028008) | 9e-32 | Click |
7 | complement(1873797..1874390) | hypothetical protein; CLH_1731 | N/A | Click |
8 | complement(1874657..1875013) | hypothetical protein; CLH_1732 | N/A | Click |
9 | 1874843..1874854 | attR TCTTTTTACATC | N/A | Click |
10 | complement(1875198..1875782) | PHAGE_Clostr_phiCD6356: putative site-specific recombinase; CLH_1733; phage(gi326536904) | 1e-39 | Click |
11 | complement(1875779..1876006) | hypothetical protein; CLH_1734 | N/A | Click |
12 | complement(1876061..1876432) | PHAGE_Clostr_PhiS63: gp22; CLH_1735; phage(gi388570651) | 3e-29 | Click |
Region 5, total : 25 CDS
# | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
---|---|---|---|---|
1 | complement(2264698..2265576) | PHAGE_Parame_1: 6mA DNA methylase M.CviAI; CLH_2099; phage(gi9632131) | 2e-12 | Click |
2 | 2265581..2265594 | attL AAAATCCTCCTTAA | N/A | Click |
3 | complement(2265638..2267227) | hypothetical protein; CLH_2100 | N/A | Click |
4 | complement(2267480..2268154) | PHAGE_Clostr_phiCPV4: N-acetylmuramoyl-L-alanine amidase; CLH_2101; phage(gi392972663) | 4e-25 | Click |
5 | complement(2268216..2268632) | PHAGE_Clostr_phiCTP1: predicted holin; CLH_2102; phage(gi304360690) | 3e-31 | Click |
6 | complement(2268732..2268956) | hypothetical protein; CLH_2103 | N/A | Click |
7 | complement(2269044..2269358) | PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p040; CLH_2104; phage(gi9630165) | 9e-05 | Click |
8 | complement(2269372..2270889) | PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; CLH_2105; phage(gi9631364) | 1e-07 | Click |
9 | complement(2270908..2272653) | PHAGE_Lister_2389: Gp14 protein; CLH_2106; phage(gi17488517) | 4e-18 | Click |
10 | complement(2272650..2273324) | PHAGE_Clostr_phiCD38_2: tail component protein; CLH_2107; phage(gi333798124) | 2e-15 | Click |
11 | complement(2273340..2276810) | PHAGE_Clostr_phiCP26F: phage tail tape measure protein; CLH_2108; phage(gi422933964) | 2e-103 | Click |
12 | complement(2276860..2277123) | hypothetical protein; CLH_2109 | N/A | Click |
13 | complement(2277126..2277449) | hypothetical protein; CLH_2110 | N/A | Click |
14 | complement(2277452..2278033) | hypothetical protein; CLH_2111 | N/A | Click |
15 | complement(2278036..2278356) | PHAGE_Lactoc_bIL285: Orf49; CLH_2112; phage(gi13095729) | 2e-12 | Click |
16 | complement(2278349..2278738) | PHAGE_Geobac_E2: hypothetical protein GBVE2_gp010; CLH_2113; phage(gi148747737) | 5e-12 | Click |
17 | complement(2278738..2279073) | hypothetical protein; CLH_2114 | N/A | Click |
18 | complement(2279048..2279377) | PHAGE_Lister_2389: Gp6 protein; CLH_2115; phage(gi17488509) | 1e-14 | Click |
19 | complement(2279392..2280588) | PHAGE_Lister_2389: major capsid protein a; CLH_2116; phage(gi17488508) | 5e-65 | Click |
20 | complement(2280588..2281379) | PHAGE_Lister_2389: Clp protease; CLH_2117; phage(gi17488507) | 2e-33 | Click |
21 | complement(2281381..2282529) | PHAGE_Lister_2389: hypothetical protein 2389gp03; CLH_2118; phage(gi17488506) | 5e-53 | Click |
22 | complement(2282578..2284233) | PHAGE_Lister_2389: terminase large subunit; CLH_2119; phage(gi17488505) | 4e-119 | Click |
23 | complement(2284214..2284768) | PHAGE_Lister_2389: terminase small subunit; CLH_2120; phage(gi17488504) | 3e-09 | Click |
24 | complement(2284871..2285197) | PHAGE_Lister_2389: Gp54 protein; CLH_2121; phage(gi17488559) | 9e-19 | Click |
25 | complement(2285185..2285502) | PHAGE_Strept_Dp_1: hypothetical protein; CLH_2122; phage(gi327198353) | 3e-05 | Click |
26 | 2285550..2285563 | attR AAAATCCTCCTTAA | N/A | Click |
27 | complement(2285656..2286198) | PHAGE_Clostr_phiCD6356: putative site-specific recombinase; CLH_2123; phage(gi326536904) | 2e-51 | Click |