| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
Legend
| Hits against Virus and prophage DB | |
| Hits against Bacterial DB or GenBank file |
Region 1, total : 26 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 1480034..1481371 | PHAGE_Burkho_phi1026b: gp59; Rpic_1383; phage(gi38707949) | 2e-10 | Click |
| 2 | complement(1481859..1482248) | PHAGE_Ralsto_RSS0: hypothetical protein; Rpic_1385; phage(gi423262465) | 6e-50 | Click |
| 3 | 1482365..1482565 | PHAGE_Ralsto_RSS0: hypothetical protein; Rpic_1386; phage(gi423262454) | 2e-05 | Click |
| 4 | 1482565..1482738 | hypothetical protein; Rpic_1387 | N/A | Click |
| 5 | 1482738..1482848 | hypothetical protein; Rpic_1388 | N/A | Click |
| 6 | 1482848..1483945 | PHAGE_Ralsto_PE226: putative phage DNA replicase; Rpic_1389; phage(gi327198637) | 2e-47 | Click |
| 7 | 1483918..1484253 | PHAGE_Ralsto_PE226: hypothetical protein; Rpic_1390; phage(gi327198629) | 2e-09 | Click |
| 8 | 1484250..1484465 | hypothetical protein; Rpic_1391 | N/A | Click |
| 9 | 1484480..1484728 | PHAGE_Pseudo_Pf1: major coat protein; Rpic_1392; phage(gi9625370) | 8e-06 | Click |
| 10 | 1484799..1486208 | PHAGE_Ralsto_p12J: ORF5; Rpic_1393; phage(gi37595896) | 4e-75 | Click |
| 11 | 1486217..1486525 | PHAGE_Ralsto_p12J: ORF6; Rpic_1394; phage(gi37595897) | 5e-07 | Click |
| 12 | 1486522..1487577 | PHAGE_Ralsto_p12J: ORF7; Rpic_1395; phage(gi156535142) | 8e-61 | Click |
| 13 | complement(1487698..1487994) | hypothetical protein; Rpic_1396 | N/A | Click |
| 14 | complement(1488657..1489679) | PHAGE_Ralsto_p12J: ORF9; Rpic_1397; phage(gi156535144) | 0.0 | Click |
| 15 | complement(1490138..1490632) | PHAGE_Ralsto_p12J: ORF8; Rpic_1398; phage(gi156535143) | 4e-91 | Click |
| 16 | complement(1490718..1491866) | PHAGE_Ralsto_p12J: ORF7; Rpic_1399; phage(gi156535142) | 0.0 | Click |
| 17 | complement(1491874..1492194) | PHAGE_Ralsto_p12J: ORF6; Rpic_1400; phage(gi37595897) | 8e-52 | Click |
| 18 | complement(1492195..1493661) | PHAGE_Ralsto_p12J: ORF5; Rpic_1401; phage(gi37595896) | 0.0 | Click |
| 19 | complement(1493805..1494008) | PHAGE_Ralsto_p12J: ORF4; Rpic_1402; phage(gi37595895) | 2e-30 | Click |
| 20 | complement(1494013..1494246) | PHAGE_Ralsto_p12J: ORF3; Rpic_1403; phage(gi37595894) | 2e-37 | Click |
| 21 | complement(1494246..1494554) | PHAGE_Ralsto_p12J: ORF2; Rpic_1404; phage(gi37595893) | 3e-56 | Click |
| 22 | complement(1494605..1494967) | PHAGE_Ralsto_p12J: ORF1; Rpic_1405; phage(gi37595892) | 2e-64 | Click |
| 23 | complement(1495534..1496745) | PHAGE_Lactob_KC5a: putative minor tail protein; Rpic_1406; phage(gi90592623) | 4e-08 | Click |
| 24 | 1496865..1497827 | PHAGE_Xantho_vB_XveM_DIBBI: putative AraC family transcriptional regulator; Rpic_1407; phage(gi389060447) | 4e-06 | Click |
| 25 | complement(1497831..1498769) | PHAGE_Burkho_phi1026b: gp58; Rpic_1408; phage(gi38707948) | 2e-05 | Click |
| 26 | 1498966..1500270 | PHAGE_Burkho_phi1026b: gp59; Rpic_1409; phage(gi38707949) | 2e-77 | Click |
Region 2, total : 48 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2393193..2393209 | attL GGCTGTAGCTCAGTTGG | N/A | Click |
| 2 | 2403290..2404543 | PROPHAGE_Mesorh_MAFF303099: prophage integrase; Rpic_2283; phage(gi13470710) | 4e-79 | Click |
| 3 | complement(2404801..2405391) | PHAGE_Vibrio_VP882: putative phage-related protein; Rpic_2284; phage(gi126010912) | 1e-11 | Click |
| 4 | complement(2405391..2405873) | PHAGE_Bordet_1: Bbp2; Rpic_2285; phage(gi41179364) | 2e-47 | Click |
| 5 | complement(2406175..2408118) | PHAGE_Burkho_BcepC6B: putative tail fiber protein; Rpic_2286; phage(gi48697208) | 1e-27 | Click |
| 6 | 2408197..2408574 | PHAGE_Acanth_mimivirus: putative J domain-containing protein; Rpic_2287; phage(gi311977644) | 7e-11 | Click |
| 7 | complement(2408564..2411227) | Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Rpic_2288 | N/A | Click |
| 8 | complement(2411224..2412612) | hypothetical protein; Rpic_2289 | N/A | Click |
| 9 | complement(2412618..2413703) | PHAGE_Vibrio_VvAW1: hypothetical protein; Rpic_2290; phage(gi460042891) | 1e-08 | Click |
| 10 | complement(2413705..2414166) | GCN5-like N-acetyltransferase; Rpic_2291 | N/A | Click |
| 11 | complement(2414163..2414729) | PHAGE_Synech_S_SM2: hypothetical protein; Rpic_2292; phage(gi326781907) | 5e-05 | Click |
| 12 | complement(2415021..2415353) | PHAGE_Vibrio_VvAW1: hypothetical protein; Rpic_2293; phage(gi460042893) | 5e-05 | Click |
| 13 | complement(2415350..2415748) | hypothetical protein; Rpic_2294 | N/A | Click |
| 14 | complement(2415748..2417184) | PHAGE_Vibrio_VvAW1: hypothetical protein; Rpic_2295; phage(gi460042895) | 2e-61 | Click |
| 15 | complement(2417181..2417897) | PHAGE_Vibrio_VvAW1: hypothetical protein; Rpic_2296; phage(gi460042896) | 3e-14 | Click |
| 16 | complement(2417901..2418245) | hypothetical protein; Rpic_2297 | N/A | Click |
| 17 | complement(2418254..2418511) | PHAGE_Ralsto_RSL1: unnamed protein product; Rpic_2298; phage(gi189427061) | 3e-10 | Click |
| 18 | complement(2418508..2418834) | hypothetical protein; Rpic_2299 | N/A | Click |
| 19 | complement(2418896..2420161) | PHAGE_Vibrio_VvAW1: P22 coat protein; Rpic_2300; phage(gi460042898) | 8e-35 | Click |
| 20 | complement(2420167..2421000) | PHAGE_Vibrio_VvAW1: hypothetical protein; Rpic_2301; phage(gi460042899) | 1e-12 | Click |
| 21 | complement(2421130..2422437) | hypothetical protein; Rpic_2302 | N/A | Click |
| 22 | complement(2422509..2424638) | PHAGE_Vibrio_VvAW1: hypothetical protein; Rpic_2303; phage(gi460042900) | 2e-105 | Click |
| 23 | complement(2424638..2424799) | hypothetical protein; Rpic_2304 | N/A | Click |
| 24 | complement(2424802..2426277) | PHAGE_Vibrio_VpV262: hypothetical protein VpV262p61; Rpic_2305; phage(gi21234401) | 6e-20 | Click |
| 25 | complement(2426246..2426689) | hypothetical protein; Rpic_2306 | N/A | Click |
| 26 | complement(2426872..2427324) | PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; Rpic_2307; phage(gi414087138) | 2e-06 | Click |
| 27 | complement(2427385..2428008) | PHAGE_Burkho_BcepC6B: hypothetical protein BcepC6B_gp34; Rpic_2308; phage(gi48697224) | 3e-18 | Click |
| 28 | complement(2428008..2428280) | hypothetical protein; Rpic_2309 | N/A | Click |
| 29 | complement(2428280..2428459) | hypothetical protein; Rpic_2310 | N/A | Click |
| 30 | complement(2428493..2428783) | hypothetical protein; Rpic_2311 | N/A | Click |
| 31 | complement(2428867..2428942) | tRNA | N/A | Click |
| 32 | complement(2428948..2429023) | tRNA | N/A | Click |
| 33 | complement(2429112..2429525) | hypothetical protein; Rpic_2312 | N/A | Click |
| 34 | complement(2429526..2429726) | hypothetical protein; Rpic_2313 | N/A | Click |
| 35 | complement(2429723..2429995) | hypothetical protein; Rpic_2314 | N/A | Click |
| 36 | complement(2429992..2430789) | PHAGE_Sulfit_pCB2047_C: hypothetical protein; Rpic_2315; phage(gi472341802) | 3e-58 | Click |
| 37 | complement(2430786..2431073) | PHAGE_Escher_HK639: hypothetical protein; Rpic_2316; phage(gi356870664) | 5e-14 | Click |
| 38 | complement(2431070..2431495) | PHAGE_Pseudo_PAJU2: putative NinB; Rpic_2317; phage(gi209552487) | 1e-11 | Click |
| 39 | complement(2431492..2431803) | hypothetical protein; Rpic_2318 | N/A | Click |
| 40 | complement(2431809..2432168) | hypothetical protein; Rpic_2319 | N/A | Click |
| 41 | complement(2432165..2432473) | hypothetical protein; Rpic_2320 | N/A | Click |
| 42 | complement(2432550..2432882) | hypothetical protein; Rpic_2321 | N/A | Click |
| 43 | complement(2432870..2433070) | hypothetical protein; Rpic_2322 | N/A | Click |
| 44 | complement(2433080..2433661) | hypothetical protein; Rpic_2323 | N/A | Click |
| 45 | complement(2433685..2434161) | PHAGE_Lister_B054: gp57; Rpic_2324; phage(gi157325341) | 1e-07 | Click |
| 46 | complement(2434169..2435563) | PHAGE_Burkho_KS9: helicase gp45; Rpic_2325; phage(gi255033728) | 2e-77 | Click |
| 47 | complement(2435560..2436465) | PHAGE_Pseudo_phi297: putative DNA replication protein O; Rpic_2326; phage(gi374531278) | 6e-20 | Click |
| 48 | complement(2436465..2436626) | hypothetical protein; Rpic_2327 | N/A | Click |
| 49 | complement(2436623..2436799) | hypothetical protein; Rpic_2328 | N/A | Click |
| 50 | complement(2436796..2437200) | PHAGE_Xylell_Xfas53: gp19; Rpic_2329; phage(gi273810438) | 6e-23 | Click |
| 51 | 2437459..2438367 | PHAGE_Pseudo_phi297: putative phage repressor; Rpic_2330; phage(gi374531272) | 3e-20 | Click |
| 52 | 2440701..2440717 | attR GGCTGTAGCTCAGTTGG | N/A | Click |
Region 3, total : 26 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | 2440847..2442232 | PHAGE_Caulob_CcrColossus: putative TROVE-like domain protein; Rpic_2337; phage(gi414088195) | 4e-110 | Click |
| 2 | 2442234..2442560 | hypothetical protein; Rpic_2338 | N/A | Click |
| 3 | 2442562..2443047 | HNH endonuclease; Rpic_2339 | N/A | Click |
| 4 | 2443050..2443427 | PHAGE_Rhizob_3: p079; Rpic_2340; phage(gi195546609) | 5e-44 | Click |
| 5 | 2443444..2443689 | hypothetical protein; Rpic_2341 | N/A | Click |
| 6 | 2443689..2443874 | hypothetical protein; Rpic_2342 | N/A | Click |
| 7 | 2443901..2444179 | hypothetical protein; Rpic_2343 | N/A | Click |
| 8 | 2444176..2445006 | PHAGE_Pseudo_PAJU2: putative ssDNA annealing protein; Rpic_2344; phage(gi209552467) | 4e-72 | Click |
| 9 | 2445037..2446668 | PHAGE_Thalas_BA3: hypothetical protein BA3_0032; Rpic_2345; phage(gi160700626) | 2e-53 | Click |
| 10 | 2446723..2447226 | hypothetical protein; Rpic_2346 | N/A | Click |
| 11 | 2447357..2447965 | hypothetical protein; Rpic_2347 | N/A | Click |
| 12 | 2448019..2448609 | PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; Rpic_2348; phage(gi374531713) | 2e-11 | Click |
| 13 | 2448619..2448990 | hypothetical protein; Rpic_2349 | N/A | Click |
| 14 | 2449191..2450372 | PHAGE_Bordet_1: reverse transcriptase; Rpic_2350; phage(gi41179367) | 6e-32 | Click |
| 15 | 2450369..2450743 | PHAGE_Caulob_CcrRogue: hypothetical protein; Rpic_2351; phage(gi414089080) | 2e-12 | Click |
| 16 | 2450740..2452419 | PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp44; Rpic_2352; phage(gi17313261) | 0.0 | Click |
| 17 | 2452416..2454980 | PHAGE_Pseudo_phi297: putative DNA methylase N-4/N-6 domain protein; Rpic_2353; phage(gi374531254) | 0.0 | Click |
| 18 | 2454977..2455327 | PHAGE_Burkho_Bcep22: Bcep22gp48; Rpic_2354; phage(gi38640354) | 2e-32 | Click |
| 19 | 2455324..2455548 | hypothetical protein; Rpic_2355 | N/A | Click |
| 20 | 2455749..2455997 | hypothetical protein; Rpic_2356 | N/A | Click |
| 21 | 2455987..2456547 | PHAGE_Burkho_BcepF1: hypothetical protein BcepF1.070; Rpic_2357; phage(gi126011004) | 6e-09 | Click |
| 22 | 2456768..2457157 | hypothetical protein; Rpic_2358 | N/A | Click |
| 23 | 2457154..2457384 | hypothetical protein; Rpic_2359 | N/A | Click |
| 24 | 2457389..2457637 | hypothetical protein; Rpic_2360 | N/A | Click |
| 25 | 2457630..2457869 | PHAGE_Shigel_AG3: hypothetical membrane protein; Rpic_2361; phage(gi282599214) | 1e-08 | Click |
| 26 | 2457924..2458154 | PHAGE_Entero_P4: transcriptional regulator; Rpic_2362; phage(gi9627517) | 1e-07 | Click |
Region 4, total : 14 CDS
| # | CDS_POSITION | BLAST_HIT | E-VALUE | SEQUENCE |
|---|---|---|---|---|
| 1 | complement(2649220..2649516) | PHAGE_Ralsto_RSM1: hypothetical protein RPRV1_gp15; Rpic_2538; phage(gi117676355) | 8e-14 | Click |
| 2 | 2649653..2649967 | hypothetical protein; Rpic_2539 | N/A | Click |
| 3 | 2650032..2650325 | PHAGE_Ralsto_p12J: ORF2; Rpic_2540; phage(gi37595893) | 1e-10 | Click |
| 4 | 2650325..2650510 | hypothetical protein; Rpic_2541 | N/A | Click |
| 5 | 2650510..2650659 | hypothetical protein; Rpic_2542 | N/A | Click |
| 6 | 2650659..2650907 | PHAGE_Ralsto_p12J: ORF3; Rpic_2543; phage(gi37595894) | 3e-19 | Click |
| 7 | 2650904..2651146 | PHAGE_Ralsto_p12J: ORF4; Rpic_2544; phage(gi37595895) | 1e-07 | Click |
| 8 | 2651146..2651277 | hypothetical protein; Rpic_2545 | N/A | Click |
| 9 | 2651290..2652744 | PHAGE_Ralsto_p12J: ORF5; Rpic_2546; phage(gi37595896) | 4e-179 | Click |
| 10 | 2652744..2653061 | PHAGE_Ralsto_p12J: ORF6; Rpic_2547; phage(gi37595897) | 1e-30 | Click |
| 11 | 2653069..2654199 | PHAGE_Ralsto_p12J: ORF7; Rpic_2548; phage(gi156535142) | 3e-146 | Click |
| 12 | 2654659..2655543 | PHAGE_Ralsto_p12J: ORF9; Rpic_2549; phage(gi156535144) | 2e-23 | Click |
| 13 | complement(2655890..2656480) | PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp14; Rpic_2550; phage(gi209901327) | 7e-88 | Click |
| 14 | complement(2656533..2656622) | tRNA | N/A | Click |
| 15 | complement(2656705..2658021) | seryl-tRNA synthetase; Rpic_2551 | N/A | Click |
| 16 | complement(2658102..2659409) | PHAGE_Vibrio_vB_VpaS_MAR10: putative DNA polymerase III; Rpic_2552; phage(gi428782157) | 1e-13 | Click |