Definition Lactobacillus fermentum IFO 3956, complete genome.
Accession NC_010610
Length 2,098,685
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 13 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 146834..148384  PHAGE_Pseudo_1: tail fiber protein; LAF_0122; phage(gi29366736)  6e-05  Click
2 complement(148685..148900)  hypothetical protein; LAF_0123  N/A  Click
3 149463..150185  PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; LAF_0124; phage(gi326784002)  6e-35  Click
4 150188..150430  phosphoribosylformylglycinamidine synthase; LAF_0125  N/A  Click
5 150431..151111  phosphoribosylformylglycinamidine synthase I; LAF_0126  N/A  Click
6 151115..153340  PHAGE_Microb_Min1: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; LAF_0127; phage(gi149882852)  1e-147  Click
7 153316..154779  PHAGE_Parame_1: Glutamine:fructose-6-phosphate amidotransferase; LAF_0128; phage(gi340025710)  2e-20  Click
8 154779..155816  PHAGE_Synech_S_SKS1: glycinamide ribonucleotide formyltransferase; LAF_0129; phage(gi472340860)  5e-60  Click
9 155825..156406  PHAGE_Synech_S_SKS1: cyanobacterial phosphoribosylglycinamide formyltransferase; LAF_0130; phage(gi472340960)  2e-28  Click
10 156390..157943  PHAGE_Prochl_P_SSM2: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; LAF_0131; phage(gi61806062)  4e-74  Click
11 158217..159470  phosphoribosylamine-glycine ligase; LAF_0132  N/A  Click
12 complement(159716..160879)  PHAGE_Lactob_LP65: transposase; LAF_0133; phage(gi56693108)  3e-164  Click
13 complement(160876..161313)  PROPHAGE_Escher_Sakai: putative transposase; LAF_0134; phage(gi15834436)  2e-18  Click
Region 2, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 539326..539340  attL    ATTACTTGTTGTAGA  N/A  Click
2 complement(539413..540534)  PHAGE_Lactob_Sha1: phage integrase; LAF_0460; phage(gi418489824)  2e-82  Click
3 542998..543198  hypothetical protein; LAF_0461  N/A  Click
4 543201..543686  PHAGE_Geobac_E2: Siphovirus Gp157-like protein; LAF_0462; phage(gi148747762)  2e-24  Click
5 543711..544391  PHAGE_Strept_2: nucleoside triphosphate binding motifs protein; LAF_0463; phage(gi273809760)  4e-72  Click
6 544384..545730  PHAGE_Lactob_A2: putative helicase; LAF_0464; phage(gi22296555)  4e-150  Click
7 545750..546310  PHAGE_Lactob_A2: putative single stranded binding protein; LAF_0465; phage(gi22296556)  1e-48  Click
8 546376..548685  PHAGE_Lactob_A2: putative primase; LAF_0466; phage(gi22296557)  0.0  Click
9 548986..549330  PHAGE_Lactob_AQ113: phage protein-Restriction nuclease superfamily; LAF_0467; phage(gi446730281)  6e-34  Click
10 550838..551746  hypothetical protein; LAF_0468  N/A  Click
11 552537..552998  PHAGE_Lactob_Sha1: P27 family phage terminase small subunit; LAF_0469; phage(gi418489801)  1e-22  Click
12 552995..554899  PHAGE_Lactob_Sha1: phage terminase-like protein large subunit; LAF_0470; phage(gi418489802)  4e-135  Click
13 554914..555096  hypothetical protein; LAF_0471  N/A  Click
14 555096..556316  PHAGE_Lactob_Sha1: phage portal protein; LAF_0472; phage(gi418489804)  1e-46  Click
15 556765..558027  PHAGE_Lactob_1: protease-scaffold-major head protein; LAF_0473; phage(gi219563201)  2e-100  Click
16 558048..558350  PHAGE_Lactoc_bIL309: Orf44; LAF_0474; phage(gi13095849)  5e-05  Click
17 558569..559120  PHAGE_Strept_DT1: putative tail component protein; LAF_0475; phage(gi9632427)  7e-34  Click
18 559503..560126  PHAGE_Lactob_Sha1: major tail protein; LAF_0476; phage(gi418489811)  3e-14  Click
19 560193..560522  PHAGE_Lactob_phiAT3: putative tail component; LAF_0477; phage(gi48697270)  1e-10  Click
20 560727..564926  PHAGE_Lactob_Sha1: minor tail protein; LAF_0478; phage(gi418489814)  7e-111  Click
21 564989..565828  PHAGE_Staphy_2: phage tail tape measure protein like; LAF_0479; phage(gi156604006)  3e-14  Click
22 565835..566875  hypothetical protein; LAF_0480  N/A  Click
23 566872..568434  PHAGE_Lactob_LF1: phage-associated protein/endopeptidase; LAF_0481; phage(gi418489399)  1e-30  Click
24 575894..575908  attR    ATTACTTGTTGTAGA  N/A  Click