Definition Cupriavidus taiwanensis LMG 19424 chromosome 1, complete sequence.
Accession NC_010528
Length 3,416,911
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 53 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 916135..916146  attL    CTGTGAGGCGGT  N/A  Click
2 919135..920301  PHAGE_Plankt_PaV_LD: ABC transporter; RALTA_A0888; phage(gi371496158)  1e-23  Click
3 920356..920730  PHAGE_Yersin_phiR1_37: hypothetical protein; RALTA_A0889; phage(gi358356578)  1e-05  Click
4 complement(920860..921090)  PHAGE_Entero_P4: transcriptional regulator; RALTA_A0890; phage(gi9627517)  2e-06  Click
5 complement(921087..921563)  hypothetical protein; RALTA_A0891  N/A  Click
6 complement(921560..921979)  hypothetical protein; RALTA_A0892  N/A  Click
7 complement(922064..922279)  PHAGE_Ralsto_phiRSA1: hypothetical protein RSc1899-like; RALTA_A0893; phage(gi145708118)  9e-11  Click
8 complement(922272..922514)  PHAGE_Ralsto_phiRSA1: transmembrane protein; RALTA_A0894; phage(gi145708117)  5e-22  Click
9 complement(922514..922678)  hypothetical protein; RALTA_A0895  N/A  Click
10 complement(922675..925386)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp40; RALTA_A0896; phage(gi17313257)  0.0  Click
11 complement(925470..925718)  PHAGE_Burkho_KS5: gp8; RALTA_A0897; phage(gi327198006)  2e-18  Click
12 complement(925715..925909)  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp37; RALTA_A0898; phage(gi145708111)  1e-16  Click
13 complement(925938..926159)  PHAGE_Burkho_KL3: gp11; RALTA_A0899; phage(gi327198056)  2e-12  Click
14 complement(926156..926359)  PHAGE_Burkho_KS5: gp10; RALTA_A0900; phage(gi327198008)  3e-07  Click
15 926422..926889  PHAGE_Burkho_KS5: gp11; RALTA_A0901; phage(gi327198009)  6e-26  Click
16 927030..927668  PHAGE_Ralsto_phiRSA1: hypothetical protein RPRSA1_gp33; RALTA_A0902; phage(gi145708107)  5e-11  Click
17 complement(928133..928402)  hypothetical protein; RALTA_A0903  N/A  Click
18 928423..928767  hypothetical protein; RALTA_A0904  N/A  Click
19 928715..929080  hypothetical protein; RALTA_A0905  N/A  Click
20 complement(929754..930041)  hypothetical protein; RALTA_A0906  N/A  Click
21 complement(930227..930397)  hypothetical protein; RALTA_A0907  N/A  Click
22 complement(930601..931725)  PHAGE_Burkho_KS5: gp13; RALTA_A0908; phage(gi327198011)  4e-110  Click
23 complement(931722..932144)  PHAGE_Burkho_KS5: gp14; RALTA_A0909; phage(gi327198012)  5e-37  Click
24 complement(932149..935046)  PHAGE_Burkho_KS5: gp15; tail; phage length determinator; RALTA_A0910(gi327198013)  1e-86  Click
25 complement(935537..936046)  PHAGE_Burkho_KS5: gp18; RALTA_A0912; phage(gi327198016)  7e-53  Click
26 complement(936075..937247)  PHAGE_Burkho_KS5: gp19; RALTA_A0913; phage(gi327198017)  8e-153  Click
27 complement(937399..938274)  PHAGE_Burkho_KS5: gp22; RALTA_A0914; phage(gi327198020)  2e-70  Click
28 complement(938288..941425)  PHAGE_Burkho_KS5: gp23; RALTA_A0915; phage(gi327198021)  2e-81  Click
29 complement(941429..941971)  PHAGE_Burkho_phiE202: gp33, phage tail protein I; RALTA_A0916; phage(gi134288744)  5e-63  Click
30 complement(941964..942872)  PHAGE_Erwini_ENT90: baseplate assembly protein; RALTA_A0917; phage(gi431810943)  4e-90  Click
31 complement(942869..943228)  PHAGE_Burkho_KS5: gp26; RALTA_A0918; phage(gi327198024)  2e-28  Click
32 complement(943225..943860)  PHAGE_Burkho_KS5: gp27; RALTA_A0919; phage(gi327198025)  4e-47  Click
33 complement(943928..944374)  PHAGE_Burkho_KS5: gp29; RALTA_A0920; phage(gi327198027)  5e-40  Click
34 complement(944371..944811)  PHAGE_Burkho_KS5: gp30; RALTA_A0921; phage(gi327198028)  1e-34  Click
35 complement(944808..945320)  PHAGE_Burkho_KS5: gp32; exported; phage protein; RALTA_A0922(gi327198030)  5e-33  Click
36 complement(945317..946123)  PHAGE_Burkho_KS5: gp33; RALTA_A0923; phage(gi327198031)  6e-87  Click
37 complement(946101..946439)  PHAGE_Burkho_KS5: gp34; RALTA_A0924; phage(gi327198032)  4e-17  Click
38 complement(946436..946825)  PHAGE_Burkho_KS5: gp35; RALTA_A0925; phage(gi327198033)  1e-27  Click
39 complement(946841..947044)  PHAGE_Ralsto_phiRSA1: phage tail X; RALTA_A0926; phage(gi145708085)  2e-24  Click
40 complement(947044..947553)  PHAGE_Ralsto_phiRSA1: head completion/stabilization protein L; head; phage completion/stabilization protein; RALTA_A0927(gi145708084)  5e-51  Click
41 complement(947626..948348)  PHAGE_Burkho_KS5: gp39; RALTA_A0928; phage(gi327198037)  4e-61  Click
42 complement(948345..949370)  PHAGE_Burkho_KS5: gp40; RALTA_A0929; phage(gi327198038)  3e-118  Click
43 complement(949416..950249)  PHAGE_Burkho_KS5: gp41; presumed; phage capsid scaffolding protein; RALTA_A0930(gi327198039)  3e-64  Click
44 950400..952181  PHAGE_Burkho_KS5: gp42; terminase,; phage atpase subunit; RALTA_A0931(gi327198040)  0.0  Click
45 952178..953218  PHAGE_Burkho_KS5: gp43; presumed; phage portal vertex protein; RALTA_A0932(gi327198041)  6e-138  Click
46 complement(953264..953560)  hypothetical protein; RALTA_A0933  N/A  Click
47 complement(953667..953861)  hypothetical protein; RALTA_A0934  N/A  Click
48 complement(953921..954154)  hypothetical protein; RALTA_ACDS953921R  N/A  Click
49 complement(954530..955057)  zinc-dependent metallopeptidase; RALTA_A0936  N/A  Click
50 complement(955057..955431)  XRE family transcriptional regulator; RALTA_A0937  N/A  Click
51 956285..956587  hypothetical protein; RALTA_A0938  N/A  Click
52 956669..957052  hypothetical protein; RALTA_A0939  N/A  Click
53 957195..957605  hypothetical protein; RALTA_ACDS957195D  N/A  Click
54 958029..958040  attR    CTGTGAGGCGGT  N/A  Click
55 complement(958297..959553)  PROPHAGE_Mesorh_MAFF303099: prophage integrase; RALTA_A0942; phage(gi13470710)  5e-79  Click
Region 2, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(2016308..2017294)  PHAGE_Macaci_1: large tegument protein; RALTA_A1910; phage(gi30984464)  4e-07  Click
2 complement(2017287..2018066)  type IV pilus biogenesis protein pilf; tpr repeat domain; RALTA_A1911  N/A  Click
3 complement(2018063..2019217)  PHAGE_Acanth_mimivirus: putative radical SAM enzyme; RALTA_A1912; phage(gi311978166)  2e-13  Click
4 complement(2019255..2019680)  PHAGE_Anguil_1: nucleoside diphosphate kinase; RALTA_A1913; phage(gi387866117)  8e-24  Click
5 2020054..2020758  PHAGE_Camelp_virus: CMLV006; RALTA_A1914; phage(gi18640240)  2e-17  Click
6 complement(2020826..2022289)  PHAGE_Acanth_moumouvirus: SAM-dependent methyltransferase; RALTA_A1915; phage(gi441432344)  1e-06  Click
7 2022367..2023221  hypothetical protein; RALTA_A1916  N/A  Click
8 complement(2023258..2024097)  PHAGE_Brucel_Tb: putative DNA-PolB associated Exonuclease; RALTA_A1917; phage(gi418487737)  3e-05  Click
9 complement(2024094..2025281)  PHAGE_Synech_S_CBS3: group 2 RNA polymerase sigma factor; RALTA_A1918; phage(gi331028036)  9e-35  Click
10 complement(2025288..2026160)  PHAGE_Plankt_PaV_LD: peptidase M23; lysm; phage peptidoglycan-binding domain; RALTA_A1919(gi371496248)  1e-13  Click
11 complement(2026169..2027089)  PHAGE_Macaci_1: ubiquitin E3 ligase ICP0; RALTA_A1920; phage(gi110007339)  2e-05  Click
12 complement(2027133..2027885)  stationary phase survival protein sure; RALTA_A1921  N/A  Click
13 2028105..2029079  PHAGE_Synech_S_SM2: zinc-containing alcohol dehydrogenase superfamily protein; RALTA_A1922; phage(gi326781942)  3e-06  Click
14 complement(2029285..2030349)  outer membrane porin protein; RALTA_A1923  N/A  Click
15 2030583..2031257  PHAGE_Ectoca_1: EsV-1-65; RALTA_A1924; phage(gi13242537)  4e-05  Click
16 2031254..2032672  PHAGE_Ectoca_1: EsV-1-65; RALTA_A1925; phage(gi13242537)  1e-09  Click