Definition Pseudomonas putida W619 chromosome, complete genome.
Accession NC_010501
Length 5,774,330
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 58 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1438797..1440584)  PHAGE_Acanth_mimivirus: glutamine-dependent asparagine synthetase; PputW619_1300; phage(gi311977862)  1e-24  Click
2 1440566..1440584  attL    CTCCTGCTAATCCGCACAT  N/A  Click
3 complement(1440621..1441811)  PHAGE_Bordet_1: integrase; PputW619_1301; phage(gi45569541)  1e-41  Click
4 complement(1442023..1442775)  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PputW619_1302; phage(gi374531713)  6e-14  Click
5 complement(1442772..1443461)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp030; PputW619_1303; phage(gi148912795)  2e-31  Click
6 complement(1443452..1443601)  hypothetical protein; PputW619_1304  N/A  Click
7 complement(1443598..1444269)  hypothetical protein; PputW619_1305  N/A  Click
8 complement(1444256..1444630)  PHAGE_Pseudo_F116: regulatory protein; PputW619_1306; phage(gi56692917)  7e-10  Click
9 complement(1444721..1445116)  PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; PputW619_1307; phage(gi148912803)  7e-26  Click
10 complement(1445251..1445940)  PHAGE_Entero_mEp235: prophage repressor; PputW619_1308; phage(gi428781850)  3e-32  Click
11 1446015..1446326  PHAGE_Pseudo_vB_PaeS_PMG1: Cro repressor protein; PputW619_1309; phage(gi374531716)  5e-12  Click
12 complement(1446489..1446974)  hypothetical protein; PputW619_1310  N/A  Click
13 1447152..1447430  hypothetical protein; PputW619_1311  N/A  Click
14 1447427..1447732  hypothetical protein; PputW619_1312  N/A  Click
15 1447729..1447965  hypothetical protein; PputW619_1313  N/A  Click
16 1447962..1448252  hypothetical protein; PputW619_1314  N/A  Click
17 1448249..1449019  PHAGE_Lactob_A2: putative antirepressor; PputW619_1315; phage(gi22296547)  2e-21  Click
18 1449016..1449390  hypothetical protein; PputW619_1316  N/A  Click
19 1449387..1449614  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp050; PputW619_1317; phage(gi148912815)  9e-08  Click
20 1449626..1450393  PHAGE_Aggreg_S1249: replication protein; PputW619_1318; phage(gi273809588)  8e-11  Click
21 1450390..1451163  PHAGE_Pseudo_F10: DNA replication protein DnaC; PputW619_1319; phage(gi148912818)  3e-68  Click
22 1451160..1452572  PHAGE_Pseudo_vB_PaeS_PMG1: replicative DNA helicase; PputW619_1320; phage(gi374531720)  3e-63  Click
23 1452559..1453065  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp055; PputW619_1321; phage(gi148912820)  3e-06  Click
24 1453062..1453349  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp057; PputW619_1322; phage(gi148912822)  1e-14  Click
25 1453346..1453735  PHAGE_Pseudo_PAJU2: putative antitermination protein Q; PputW619_1323; phage(gi209552491)  7e-18  Click
26 1453961..1454470  hypothetical protein; PputW619_1324  N/A  Click
27 complement(1454790..1454978)  hypothetical protein; PputW619_1325  N/A  Click
28 complement(1455170..1455397)  hypothetical protein; PputW619_1326  N/A  Click
29 complement(1455394..1455627)  hypothetical protein; PputW619_1327  N/A  Click
30 1455749..1456120  PHAGE_Erwini_PEp14: holin; PputW619_1328; phage(gi374531877)  1e-06  Click
31 1456120..1456437  PHAGE_Erwini_PEp14: hypothetical protein; PputW619_1329; phage(gi374531878)  9e-05  Click
32 1456488..1456643  hypothetical protein; PputW619_1330  N/A  Click
33 1456776..1457060  hypothetical protein; PputW619_1331  N/A  Click
34 1457125..1457481  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PputW619_1332; phage(gi374531738)  5e-09  Click
35 1457472..1457840  PHAGE_Pseudo_vB_PaeS_PMG1: putative HNH endonuclease; PputW619_1333; phage(gi374531741)  2e-22  Click
36 1457968..1458351  PHAGE_Pseudo_vB_PaeS_PMG1: terminase small subunit; PputW619_1334; phage(gi374531646)  2e-20  Click
37 1458351..1460060  PHAGE_Pseudo_vB_PaeS_PMG1: terminase large subunit; PputW619_1335; phage(gi374531647)  4e-151  Click
38 1460072..1460236  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PputW619_1336; phage(gi374531648)  1e-05  Click
39 1460229..1461563  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PputW619_1337; phage(gi374531649)  1e-99  Click
40 1461560..1462306  PHAGE_Entero_phiP27: putative prohead protease; PputW619_1338; phage(gi18249903)  9e-39  Click
41 1462316..1463572  PHAGE_Pseudo_vB_PaeS_PMG1: major capsid protein; PputW619_1339; phage(gi374531651)  4e-81  Click
42 1463614..1463838  hypothetical protein; PputW619_1340  N/A  Click
43 1463842..1464318  PHAGE_Entero_mEp235: head-tail connector II; PputW619_1341; phage(gi428781817)  1e-06  Click
44 1464318..1464659  PHAGE_Pseudo_PAJU2: putative head-tail adaptor; PputW619_1342; phage(gi209552428)  5e-21  Click
45 1464652..1465137  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PputW619_1343; phage(gi374531659)  2e-64  Click
46 1465134..1465502  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PputW619_1344; phage(gi374531660)  5e-40  Click
47 1465565..1466062  PHAGE_Pseudo_vB_PaeS_PMG1: putative major tail protein; PputW619_1345; phage(gi374531661)  2e-53  Click
48 1466059..1466397  hypothetical protein; PputW619_1346  N/A  Click
49 1466427..1466684  PHAGE_Pseudo_vB_PaeS_PMG1: hypothetical protein; PputW619_1347; phage(gi374531663)  5e-13  Click
50 1466759..1467097  PHAGE_Salmon_SE2: hypothetical protein; PputW619_1348; phage(gi375267274)  4e-09  Click
51 1467151..1469712  PHAGE_Pseudo_vB_PaeS_PMG1: tail tape measure protein; PputW619_1349; phage(gi374531664)  0.0  Click
52 1469722..1470306  PHAGE_Yersin_PY54: hypothetical protein PY54p16; PputW619_1350; phage(gi33770525)  3e-16  Click
53 1470306..1470902  PHAGE_Yersin_PY54: hypothetical protein PY54p17; PputW619_1351; phage(gi33770526)  7e-30  Click
54 1470908..1471306  PHAGE_Yersin_PY54: hypothetical protein PY54p19; PputW619_1352; phage(gi33770528)  8e-36  Click
55 1471306..1476798  PHAGE_Yersin_PY54: tail protein; PputW619_1353; phage(gi33770530)  2e-105  Click
56 1477118..1477972  hypothetical protein; PputW619_1354  N/A  Click
57 1477978..1478220  hypothetical protein; PputW619_1355  N/A  Click
58 1478283..1478720  PHAGE_Pseudo_D3112: putative structural protein; PputW619_1356; phage(gi38229133)  2e-31  Click
59 1478717..1479223  PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; PputW619_1357; phage(gi16765210)  2e-10  Click
60 1479934..1479952  attR    CTCCTGCTAATCCGCACAT  N/A  Click
Region 2, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3034880..3034893  attL    CACGGTGATCGGGT  N/A  Click
2 complement(3036446..3037720)  PHAGE_Cronob_ENT39118: DNA polymerase; PputW619_2745; phage(gi431811050)  2e-97  Click
3 complement(3037710..3038168)  PHAGE_Cronob_ENT39118: protein umuD; PputW619_2746; phage(gi431811072)  3e-19  Click
4 3038241..3038960  PHAGE_Pseudo_F116: hypothetical protein F116p67; PputW619_2747; phage(gi56692976)  4e-57  Click
5 3038962..3039309  hypothetical protein; PputW619_2748  N/A  Click
6 3039470..3039691  PHAGE_Bordet_1: integrase; PputW619_2749; phage(gi45569541)  3e-07  Click
7 3039712..3041298  PHAGE_Parame_1: hypothetical protein; PputW619_2750; phage(gi9632181)  1e-30  Click
8 3041485..3042678  PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; PputW619_2751; phage(gi163932195)  7e-06  Click
9 complement(3042738..3043349)  azoreductase; PputW619_2752  N/A  Click
10 3043484..3044386  PHAGE_Burkho_phi1026b: gp58; PputW619_2753; phage(gi38707948)  9e-10  Click
11 3045683..3045696  attR    CACGGTGATCGGGT  N/A  Click
Region 3, total : 55 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4352627..4352689  attL    TGGCGGAGAGATAGGGATTTGAACCCTAGGTACTGTTGCCAGTACAACGGATTTCGAATCCGT  N/A  Click
2 complement(4353908..4354168)  PHAGE_Pseudo_phi297: hypothetical protein; PputW619_3919; phage(gi374531310)  9e-27  Click
3 complement(4354165..4354527)  PHAGE_Pseudo_phi297: hypothetical protein; PputW619_3920; phage(gi374531309)  2e-18  Click
4 complement(4354524..4354961)  PHAGE_Entero_phiV10: hypothetical structural protein; PputW619_3921; phage(gi89152439)  3e-32  Click
5 4355050..4355412  hypothetical protein; PputW619_3922  N/A  Click
6 4355480..4355803  hypothetical protein; PputW619_3923  N/A  Click
7 complement(4355813..4356043)  hypothetical protein; PputW619_3924  N/A  Click
8 complement(4356066..4356758)  PHAGE_Xantho_Xp10: conserved phage protein; PputW619_3925; phage(gi32128436)  3e-07  Click
9 complement(4356758..4357051)  PHAGE_Xantho_CP1: hypothetical protein; PputW619_3926; phage(gi431811020)  4e-08  Click
10 complement(4357067..4363090)  PHAGE_Cronob_ENT39118: phage tail protein; PputW619_3927; phage(gi431811044)  0.0  Click
11 complement(4363149..4363778)  PHAGE_Entero_mEp234: tail assembly protein I; PputW619_3928; phage(gi428782273)  1e-47  Click
12 complement(4363821..4364171)  PHAGE_Entero_mEpX2: hypothetical protein; PputW619_3929; phage(gi428765632)  1e-14  Click
13 complement(4364204..4364959)  PHAGE_Entero_HK633: minor tail protein; PputW619_3930; phage(gi428782537)  1e-63  Click
14 complement(4364962..4365711)  PHAGE_Entero_mEp237: minor tail protein L; PputW619_3931; phage(gi435439282)  2e-73  Click
15 complement(4365708..4366046)  PHAGE_Entero_mEp390: minor tail protein; PputW619_3932; phage(gi428782678)  1e-25  Click
16 complement(4366046..4369360)  PHAGE_Pseudo_DMS3: putative tail length tape measure protein; PputW619_3933; phage(gi119953666)  2e-126  Click
17 complement(4369405..4369638)  hypothetical protein; PputW619_3934  N/A  Click
18 complement(4369635..4369979)  hypothetical protein; PputW619_3935  N/A  Click
19 complement(4370020..4370520)  PHAGE_Salico_CGphi29: hypothetical protein; PputW619_3936; phage(gi472340186)  1e-13  Click
20 complement(4370576..4370962)  PHAGE_Marino_P12026: hypothetical protein; PputW619_3937; phage(gi399528327)  6e-09  Click
21 complement(4370955..4371455)  HK97 family phage protein; PputW619_3938  N/A  Click
22 complement(4371459..4371638)  hypothetical protein; PputW619_3939  N/A  Click
23 complement(4371647..4371973)  PHAGE_Entero_mEp235: hypothetical protein; PputW619_3940; phage(gi428781819)  5e-07  Click
24 complement(4371973..4372272)  PHAGE_Entero_mEp235: head-tail connector II; PputW619_3941; phage(gi428781817)  4e-14  Click
25 complement(4372273..4372644)  PHAGE_Burkho_BcepF1: hypothetical protein BcepF1.072; PputW619_3942; phage(gi126011006)  9e-08  Click
26 complement(4372700..4373902)  PHAGE_Cronob_ENT39118: major capsid protein; PputW619_3943; phage(gi431811052)  6e-60  Click
27 complement(4373899..4374540)  PHAGE_Marino_P12026: phage prohead protease; PputW619_3944; phage(gi399528321)  1e-22  Click
28 complement(4374527..4375741)  PHAGE_Entero_mEp235: portal protein; PputW619_3945; phage(gi428781813)  2e-49  Click
29 complement(4375744..4377432)  PHAGE_Entero_4795: putative large subunit terminase; PputW619_3946; phage(gi157166040)  0.0  Click
30 complement(4377429..4377962)  PHAGE_Burkho_Bcep176: gp80; PputW619_3947; phage(gi77864706)  2e-28  Click
31 complement(4378121..4378459)  PHAGE_Pseudo_PAJU2: putative endonuclease; PputW619_3948; phage(gi209552497)  3e-28  Click
32 complement(4378459..4378653)  hypothetical protein; PputW619_3949  N/A  Click
33 complement(4378703..4379035)  PHAGE_Pseudo_F10: Putative Holin; PputW619_3950; phage(gi148912825)  9e-29  Click
34 complement(4379920..4380279)  hypothetical protein; PputW619_3951  N/A  Click
35 complement(4380430..4380819)  PHAGE_Pseudo_PAJU2: putative antitermination protein Q; PputW619_3952; phage(gi209552491)  7e-18  Click
36 complement(4380816..4381103)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp057; PputW619_3953; phage(gi148912822)  3e-15  Click
37 complement(4381100..4381630)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp055; PputW619_3954; phage(gi148912820)  4e-06  Click
38 complement(4381617..4382999)  PHAGE_Pseudo_F10: Putative DnaB-like replicative helicase; PputW619_3955; phage(gi148912819)  7e-104  Click
39 complement(4382996..4383778)  PHAGE_Pseudo_F10: DNA replication protein DnaC; PputW619_3956; phage(gi148912818)  1e-90  Click
40 complement(4383775..4384569)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp052; PputW619_3957; phage(gi148912817)  3e-07  Click
41 complement(4384566..4384796)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp050; PputW619_3958; phage(gi148912815)  4e-16  Click
42 complement(4384793..4385434)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp030; PputW619_3959; phage(gi148912795)  9e-10  Click
43 complement(4385431..4386195)  PHAGE_Salmon_SPN3UB: putative antirepressor family protein; PputW619_3960; phage(gi423262399)  1e-35  Click
44 complement(4386192..4386485)  PHAGE_Pseudo_F10: hypothetical protein PPF10_gp046; PputW619_3961; phage(gi148912811)  4e-05  Click
45 complement(4386482..4386772)  hypothetical protein; PputW619_3962  N/A  Click
46 complement(4386769..4387098)  hypothetical protein; PputW619_3963  N/A  Click
47 4387936..4388715  PHAGE_Erwini_phiEt88: phage repressor protein; PputW619_3964; phage(gi327198606)  1e-43  Click
48 4388872..4389261  PHAGE_Pseudo_F10: Conserved hypothetical protein; putative transcriptional regulator, LuxR family; PputW619_3965; phage(gi148912803)  4e-16  Click
49 4389352..4389765  PHAGE_Pseudo_F116: regulatory protein; PputW619_3966; phage(gi56692917)  1e-07  Click
50 4390257..4390814  PHAGE_Bacill_phBC6A51: hypothetical protein BC1875; PputW619_3967; phage(gi31415769)  1e-08  Click
51 4390804..4391046  PHAGE_Bacill_phBC6A51: hypothetical protein BC1874; PputW619_3968; phage(gi31415768)  4e-05  Click
52 4391101..4391349  PHAGE_Pseudo_PAJU2: hypothetical protein PAJU2_gp32; PputW619_3969; phage(gi209552451)  1e-18  Click
53 complement(4391365..4391949)  hypothetical protein; PputW619_3970  N/A  Click
54 complement(4392912..4393934)  PHAGE_Pseudo_PAJU2: putative integrase; PputW619_3971; phage(gi209552450)  2e-103  Click
55 complement(4393999..4394088)  tRNA  N/A  Click
56 4393999..4394061  attR    TGGCGGAGAGATAGGGATTTGAACCCTAGGTACTGTTGCCAGTACAACGGATTTCGAATCCGT  N/A  Click
57 complement(4394181..4394891)  PHAGE_Prochl_Syn1: phosphoribosylaminoimidazole-succinocarboxamide synthase; PputW619_3972; phage(gi326784002)  2e-40  Click
58 complement(4394922..4395680)  PHAGE_Lister_B054: gp51; PputW619_3973; phage(gi157325335)  6e-20  Click
Region 4, total : 26 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4452059..4453177  PHAGE_Synech_S_CBS2: DprA superfamily protein; PputW619_4028; phage(gi331027974)  2e-17  Click
2 complement(4453203..4453673)  recombination regulator RecX; PputW619_4029  N/A  Click
3 complement(4453691..4454758)  PROPHAGE_Escher_MG1655: DNA strand exchange and recombination protein with protease and nuclease activity; PputW619_4030; phage(gi16130606)  3e-138  Click
4 complement(4454862..4455344)  CinA domain-containing protein; PputW619_4031  N/A  Click
5 complement(4455428..4455904)  PHAGE_Burkho_Bcep22: Bcep22gp80; PputW619_4032; phage(gi38640385)  6e-09  Click
6 complement(4455901..4456449)  PHAGE_Cronob_vB_CsaM_GAP31: lysozyme; PputW619_4033; phage(gi414086784)  8e-43  Click
7 complement(4456477..4457511)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp30; PputW619_4034; phage(gi17313247)  5e-36  Click
8 complement(4457516..4457722)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp09; PputW619_4035; phage(gi17313226)  8e-07  Click
9 complement(4457697..4458542)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp29; PputW619_4036; phage(gi17313246)  7e-12  Click
10 complement(4458552..4460405)  PHAGE_Bacill_phiAGATE: putative tail lysin 2; PputW619_4037; phage(gi448260828)  2e-08  Click
11 complement(4460530..4460832)  hypothetical protein; PputW619_4038  N/A  Click
12 complement(4460843..4461352)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp25; PputW619_4039; phage(gi17313242)  2e-27  Click
13 complement(4461366..4462532)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp24; PputW619_4040; phage(gi17313241)  3e-61  Click
14 complement(4462602..4463051)  PHAGE_Pseudo_phiCTX: hypothetical protein phiCTXp23; PputW619_4041; phage(gi17313240)  3e-24  Click
15 complement(4463055..4465199)  PHAGE_Ralsto_phiRSA1: tail fiber protein gpH; PputW619_4042; phage(gi145708097)  2e-82  Click
16 complement(4465192..4465800)  PHAGE_Entero_2: P2 gpI-like baseplate assembly protein; PputW619_4043; phage(gi169936031)  3e-52  Click
17 complement(4465802..4466683)  PHAGE_Pseudo_phiCTX: predicted baseplate or base of tail fiber; PputW619_4044; phage(gi17313237)  1e-84  Click
18 complement(4466680..4467006)  PHAGE_Pseudo_phiCTX: predicted baseplate; PputW619_4045; phage(gi17313236)  5e-17  Click
19 complement(4467094..4467654)  PHAGE_Pseudo_phiCTX: predicted baseplate; PputW619_4046; phage(gi17313235)  6e-17  Click
20 complement(4467651..4468148)  phage protein; PputW619_4047  N/A  Click
21 complement(4468162..4468497)  pyocin R2_PP, holin; PputW619_4048  N/A  Click
22 complement(4468972..4469718)  PHAGE_Pseudo_F116: transcriptional regulator; PputW619_4049; phage(gi56692918)  2e-39  Click
23 4469858..4472431  PHAGE_Cafete_BV_PW1: putative DNA mismatch repair protein MutS; PputW619_4050; phage(gi310831476)  2e-30  Click
24 4472572..4472895  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PputW619_4051  N/A  Click
25 complement(4473399..4474406)  PHAGE_Synech_S_CBS1: group2 RNA polymerase sigma factor; PputW619_4052; phage(gi356870821)  4e-37  Click
26 complement(4474515..4475372)  PHAGE_Clostr_phi3626: Gp15 protein; PputW619_4053; phage(gi20065978)  1e-15  Click
Region 5, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4790697..4790709  attL    AGTCTCCCTCGGG  N/A  Click
2 4790924..4792132  PROPHAGE_Escher_CFT073: putative prophage integrase; PputW619_4347; phage(gi26250313)  5e-102  Click
3 4792154..4793014  hypothetical protein; PputW619_4348  N/A  Click
4 4793114..4793338  PHAGE_Entero_P4: transcriptional regulator; PputW619_4349; phage(gi9627517)  3e-07  Click
5 4793354..4793365  attL    CCAGTCGTGCCC  N/A  Click
6 4794188..4794598  PHAGE_Strept_TG1: P4 family phage/plasmid primase; PputW619_4350; phage(gi410491938)  3e-08  Click
7 4794595..4795782  PHAGE_Coryne_BFK20: gp43, RepA like protein; PputW619_4351; phage(gi157168416)  2e-05  Click
8 4796191..4796415  hypothetical protein; PputW619_4352  N/A  Click
9 4796418..4798280  PHAGE_Entero_mEp213: head maturation protease; PputW619_4353; phage(gi428782594)  2e-139  Click
10 4798294..4799631  PROPHAGE_Escher_CFT073: putative prophage integrase; PputW619_4354; phage(gi26250313)  9e-13  Click
11 4799713..4799724  attR    CCAGTCGTGCCC  N/A  Click
12 4800522..4800534  attR    AGTCTCCCTCGGG  N/A  Click