Definition Escherichia coli SMS-3-5 chromosome, complete genome.
Accession NC_010498
Length 5,068,389
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 24 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 955625..955638  attL    AGAAATACCCGTAT  N/A  Click
2 955827..957047  PHAGE_Entero_mEpX1: integrase; EcSMS35_0939; phage(gi428781899)  5e-52  Click
3 957044..957898  hypothetical protein; EcSMS35_0940  N/A  Click
4 958002..958226  PHAGE_Entero_P4: transcriptional regulator; EcSMS35_0941; phage(gi9627517)  3e-08  Click
5 958237..959055  hypothetical protein; EcSMS35_0942  N/A  Click
6 959075..959278  hypothetical protein; EcSMS35_0943  N/A  Click
7 959271..959591  hypothetical protein; EcSMS35_0944  N/A  Click
8 959598..959897  hypothetical protein; EcSMS35_0945  N/A  Click
9 959894..961711  PHAGE_Entero_P4: DNA primase; EcSMS35_0946; phage(gi9627512)  3e-131  Click
10 961999..962244  hypothetical protein; EcSMS35_0947  N/A  Click
11 962241..962666  PHAGE_Lactoc_Q54: hypothetical protein Q54_gp12; EcSMS35_0948; phage(gi115304283)  2e-09  Click
12 962689..962931  hypothetical protein; EcSMS35_0949  N/A  Click
13 complement(962967..963473)  hypothetical protein; EcSMS35_0950  N/A  Click
14 963760..964929  PHAGE_Salmon_ST64B: Major capsid protein precursor; EcSMS35_0951; phage(gi23505451)  2e-60  Click
15 964984..965544  PHAGE_Entero_1: prohead protease; EcSMS35_0952; phage(gi225626394)  1e-22  Click
16 965546..966760  PHAGE_Salmon_ST64B: Portal Protein; EcSMS35_0953; phage(gi23505449)  1e-48  Click
17 966753..967055  PHAGE_Entero_mEp235: head-tail connector II; EcSMS35_0954; phage(gi428781817)  3e-05  Click
18 967055..967495  PHAGE_Burkho_phiE125: putative class I holin; EcSMS35_0955; phage(gi17975232)  1e-15  Click
19 967757..968140  PHAGE_Salmon_ST64B: terminase small subunit; EcSMS35_0956; phage(gi23505446)  1e-11  Click
20 968124..969785  PHAGE_Burkho_KS9: terminase gp2; EcSMS35_0957; phage(gi255033734)  7e-85  Click
21 969791..970072  hypothetical protein; EcSMS35_0958  N/A  Click
22 complement(970562..970723)  hypothetical protein; EcSMS35_0959  N/A  Click
23 970767..970780  attR    AGAAATACCCGTAT  N/A  Click
24 970862..971650  hydroxyethylthiazole kinase; EcSMS35_0960  N/A  Click
25 971647..972447  phosphomethylpyrimidine kinase; EcSMS35_0961  N/A  Click
26 972512..973330  PHAGE_Clostr_phiSM101: autolytic lysozyme; EcSMS35_0962; phage(gi110804057)  9e-25  Click
Region 2, total : 59 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1164952..1172028)  PHAGE_Cronob_vB_CsaM_GAP32: long tail fiber proximal subunit; EcSMS35_1146; phage(gi414087138)  2e-27  Click
2 complement(1172341..1172418)  tRNA  N/A  Click
3 complement(1172518..1173315)  hypothetical protein; EcSMS35_1148  N/A  Click
4 1173408..1173499  tRNA  N/A  Click
5 1173468..1173498  attL    ACCGGGGGTTCAAATCCCCCTCTCTCCGCCA  N/A  Click
6 complement(1173551..1174576)  PHAGE_Salmon_ST64B: Integrase protein; EcSMS35_1150; phage(gi23505472)  7e-105  Click
7 complement(1174576..1174779)  hypothetical protein; EcSMS35_1151  N/A  Click
8 complement(1174838..1177279)  PHAGE_Salmon_SPN3UB: RecE; EcSMS35_1152; phage(gi423262421)  1e-100  Click
9 complement(1177373..1177564)  hypothetical protein; EcSMS35_1153  N/A  Click
10 complement(1177561..1177749)  division inhibition protein DicB; EcSMS35_1154  N/A  Click
11 1177766..1177888  hypothetical protein; EcSMS35_1155  N/A  Click
12 complement(1178317..1178535)  hypothetical protein; EcSMS35_1156  N/A  Click
13 complement(1178565..1178693)  hypothetical protein; EcSMS35_1157  N/A  Click
14 complement(1178695..1178850)  PHAGE_Salico_CGphi29: hypothetical protein; EcSMS35_1158; phage(gi472340166)  7e-08  Click
15 1179525..1179752  PHAGE_Salmon_vB_SemP_Emek: Cro; EcSMS35_1159; phage(gi399498837)  1e-09  Click
16 1179736..1180287  hypothetical protein; EcSMS35_1160  N/A  Click
17 1180259..1181299  PHAGE_Escher_TL_2011b: hypothetical protein; EcSMS35_1161; phage(gi418487646)  1e-43  Click
18 1181331..1181753  PHAGE_Escher_HK639: replication protein 14; EcSMS35_1162; phage(gi356870655)  1e-28  Click
19 1181787..1182557  PHAGE_Stx2_c_86: hypothetical protein Stx2-86_gp38; EcSMS35_1163; phage(gi116222030)  6e-06  Click
20 1182573..1182965  hypothetical protein; EcSMS35_1164  N/A  Click
21 1182962..1183258  PHAGE_Klebsi_phiKO2: Gp58; EcSMS35_1165; phage(gi46402144)  2e-27  Click
22 1183255..1183716  PHAGE_Entero_phiV10: hypothetical protein PhiV10p48; EcSMS35_1166; phage(gi89152464)  6e-11  Click
23 1183694..1184050  PHAGE_Stx2_c_I: hypothetical protein Stx2Ip073; EcSMS35_1167; phage(gi20065868)  3e-08  Click
24 1184144..1184326  PHAGE_Entero_phiEF24C: hypothetical protein EFP_gp163; EcSMS35_1168; phage(gi158079459)  9e-08  Click
25 1184319..1184495  PHAGE_Shigel_AG3: hypothetical protein; EcSMS35_1169; phage(gi282599330)  3e-14  Click
26 1184492..1185007  PHAGE_Salmon_ST64B: hypothetical protein sb32; EcSMS35_1170; phage(gi23505476)  2e-09  Click
27 1185211..1185339  hypothetical protein; EcSMS35_1171  N/A  Click
28 1185927..1186187  hypothetical protein; EcSMS35_1172  N/A  Click
29 complement(1186201..1186332)  hypothetical protein; EcSMS35_1173  N/A  Click
30 1186534..1187589  PHAGE_Entero_mEp460: hypothetical protein; EcSMS35_1174; phage(gi428782365)  1e-90  Click
31 1187590..1187955  PHAGE_Escher_HK75: RusA-like protein; EcSMS35_1175; phage(gi356870726)  9e-40  Click
32 1187952..1188641  PHAGE_Gifsy_1: bacteriophage antiterminator protein Q; EcSMS35_1176; phage(gi169257244)  3e-81  Click
33 1188836..1188911  tRNA  N/A  Click
34 1188912..1188990  tRNA  N/A  Click
35 1188991..1189068  tRNA  N/A  Click
36 1189071..1189145  tRNA  N/A  Click
37 1189437..1189652  PHAGE_Entero_mEp460: porin; EcSMS35_1181; phage(gi428782370)  2e-31  Click
38 1189657..1190007  PHAGE_Entero_mEp460: hypothetical protein; EcSMS35_1182; phage(gi428782371)  3e-39  Click
39 1190071..1190604  PHAGE_Entero_mEp460: endolysin; EcSMS35_1183; phage(gi428782372)  2e-99  Click
40 1190601..1191068  PHAGE_Entero_cdtI: lysin; EcSMS35_1184; phage(gi148609441)  2e-75  Click
41 1191610..1192092  PHAGE_Entero_mEp235: terminase small subunit; EcSMS35_1185; phage(gi428781811)  5e-67  Click
42 1192092..1193849  PHAGE_Entero_mEp235: terminase large subunit; EcSMS35_1186; phage(gi428781812)  0.0  Click
43 1193861..1194043  PHAGE_Salmon_ST64B: putative integral membrane protein; EcSMS35_1187; phage(gi23505448)  4e-27  Click
44 1194043..1195284  PHAGE_Salmon_ST64B: Portal Protein; EcSMS35_1188; phage(gi23505449)  0.0  Click
45 1195262..1195912  PHAGE_Salmon_ST64B: Pro-head protease; EcSMS35_1189; phage(gi23505450)  6e-119  Click
46 1195927..1197132  PHAGE_Salmon_ST64B: Major capsid protein precursor; EcSMS35_1190; phage(gi23505451)  0.0  Click
47 1197184..1197372  PHAGE_Salmon_ST64B: hypothetical protein sb7; EcSMS35_1191; phage(gi23505452)  2e-13  Click
48 1197384..1197689  PHAGE_Entero_mEp235: head-tail connector II; EcSMS35_1192; phage(gi428781817)  2e-07  Click
49 1198036..1198482  PHAGE_Entero_HK97: Gp10; EcSMS35_1193; phage(gi9634169)  7e-64  Click
50 1198479..1198823  PHAGE_Cronob_ENT39118: putative minor tail protein; EcSMS35_1194; phage(gi431811079)  4e-32  Click
51 1198883..1199587  PHAGE_Entero_mEp234: major tail subunit; EcSMS35_1195; phage(gi428782264)  1e-93  Click
52 1199602..1199973  PHAGE_Stx2_c_1717: putative tail assembly chaperone; EcSMS35_1196; phage(gi209447188)  2e-42  Click
53 1199985..1200275  PHAGE_Entero_HK544: tail protein; EcSMS35_1197; phage(gi428783227)  6e-30  Click
54 1200321..1203548  PHAGE_Entero_4795: putative tail component; EcSMS35_1198; phage(gi157166052)  0.0  Click
55 1203541..1203882  PHAGE_Entero_mEp460: minor tail protein; EcSMS35_1199; phage(gi428782330)  4e-23  Click
56 1203882..1204580  PHAGE_Entero_mEp460: minor tail protein; EcSMS35_1200; phage(gi428782331)  8e-125  Click
57 1204585..1205328  PHAGE_Entero_mEp460: tail fiber component; EcSMS35_1201; phage(gi428782332)  5e-143  Click
58 1205226..1205873  PHAGE_Entero_mEp460: tail assembly protein; EcSMS35_1202; phage(gi428782333)  1e-94  Click
59 1205934..1209413  PHAGE_Entero_mEp460: host specificity protein; EcSMS35_1203; phage(gi428782334)  0.0  Click
60 1209481..1210080  PHAGE_Entero_mEp460: Lom protein; EcSMS35_1204; phage(gi428782335)  2e-100  Click
61 1210145..1212682  PHAGE_Entero_mEp460: side tail fiber protein; EcSMS35_1206; phage(gi428782336)  2e-105  Click
62 complement(1212522..1213427)  PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; EcSMS35_1205; phage(gi26249446)  3e-174  Click
63 complement(1213385..1213795)  PROPHAGE_Escher_CFT073: transposase insC; EcSMS35_1207; phage(gi26249447)  1e-52  Click
64 1213859..1214140  hypothetical protein; EcSMS35_1208  N/A  Click
65 1214150..1215190  PHAGE_Entero_mEp460: side tail fiber protein; EcSMS35_1209; phage(gi428782336)  8e-48  Click
66 1215227..1215520  PHAGE_Halomo_1: hypothetical protein HAPgp19; EcSMS35_1210; phage(gi167832364)  4e-07  Click
67 1215901..1215931  attR    ACCGGGGGTTCAAATCCCCCTCTCTCCGCCA  N/A  Click
Region 3, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1902601..1903332)  PHAGE_Parame_NY2A: hypothetical protein NY2A_B554R; EcSMS35_1880; phage(gi157952858)  4e-12  Click
2 1903541..1903837  YciI-like protein; EcSMS35_1881  N/A  Click
3 1903990..1904247  hypothetical protein; EcSMS35_1882  N/A  Click
4 1904356..1906149  sulfatase family protein; EcSMS35_1884  N/A  Click
5 complement(1906146..1906745)  PHAGE_Cronob_phiES15: hypothetical protein; EcSMS35_1883; phage(gi401817614)  6e-13  Click
6 complement(1906891..1907157)  PHAGE_Escher_phiKT: tail fiber protein; EcSMS35_1885; phage(gi422936632)  6e-17  Click
7 1907391..1907738  PHAGE_Entero_Sf6: putative transposase OrfB; EcSMS35_1886; phage(gi41057343)  6e-18  Click
8 1907782..1908192  PROPHAGE_Escher_CFT073: transposase insC; EcSMS35_1887; phage(gi26249447)  1e-52  Click
9 1908150..1909055  PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; EcSMS35_1888; phage(gi26249446)  3e-174  Click
10 1909030..1909569  PHAGE_Entero_Sf6: putative transposase OrfB; EcSMS35_1889; phage(gi41057343)  9e-63  Click
Region 4, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4081414..4081426  attL    GACTCCTGTGATC  N/A  Click
2 4081597..4082760  PROPHAGE_Escher_CFT073: putative prophage integrase; EcSMS35_4002; phage(gi26250313)  2e-164  Click
3 4082773..4085493  PHAGE_Bacill_phBC6A51: hypothetical protein BC1912; EcSMS35_4003; phage(gi31415804)  6e-07  Click
4 complement(4085695..4086267)  PHAGE_Entero_P4: amber mutation-suppressing protein; EcSMS35_4004; phage(gi9627520)  9e-99  Click
5 complement(4086524..4087258)  PHAGE_Entero_P4: head size determination protein sid; EcSMS35_4005; phage(gi9627518)  5e-133  Click
6 4087811..4088077  PHAGE_Entero_P4: transcriptional regulator; EcSMS35_4006; phage(gi9627517)  1e-46  Click
7 4088260..4088664  PHAGE_Entero_P4: putative CI repressor; EcSMS35_4007; phage(gi9627516)  4e-56  Click
8 4088657..4088944  PHAGE_Entero_P4: helper derepression protein; EcSMS35_4008; phage(gi9627515)  4e-50  Click
9 4088937..4089392  PHAGE_Entero_P4: hypothetical protein P4p08; EcSMS35_4009; phage(gi9627514)  2e-87  Click
10 4089528..4089848  PHAGE_Entero_P4: hypothetical protein P4p07; EcSMS35_4010; phage(gi9627513)  6e-57  Click
11 4089863..4092196  PHAGE_Entero_P4: DNA primase; EcSMS35_4012; phage(gi9627512)  0.0  Click
12 4092673..4092685  attR    GACTCCTGTGATC  N/A  Click
Region 5, total : 55 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 4404112..4405101  PHAGE_Strept_Sfi11: putative minor tail protein; EcSMS35_4302; phage(gi9635024)  3e-06  Click
2 4405250..4405924  hypothetical protein; EcSMS35_4303  N/A  Click
3 complement(4406029..4407402)  PHAGE_Feldma_virus: putative hybrid sensor histdine kinase; EcSMS35_4304; phage(gi197322490)  1e-08  Click
4 complement(4407399..4408097)  PHAGE_Feldma_virus: putative sensor histidine kinase; EcSMS35_4305; phage(gi197322366)  4e-09  Click
5 4408244..4408747  periplasmic repressor CpxP; EcSMS35_4306  N/A  Click
6 4408771..4408817  attL    GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATC  N/A  Click
7 complement(4408933..4409913)  PHAGE_Yersin_413C: Int; EcSMS35_4307; phage(gi30065733)  0.0  Click
8 4410429..4410701  PHAGE_Yersin_413C: Cox; EcSMS35_4308; phage(gi30065735)  6e-39  Click
9 4410704..4410874  PHAGE_Yersin_413C: hypothetical protein L-413Cp32; EcSMS35_4309; phage(gi30065736)  3e-25  Click
10 4410880..4411371  PHAGE_Yersin_413C: gpB; EcSMS35_4310; phage(gi30065737)  3e-91  Click
11 4411435..4411659  PHAGE_Yersin_413C: hypothetical protein L-413Cp34; EcSMS35_4311; phage(gi30065738)  1e-33  Click
12 4411659..4411961  PHAGE_Yersin_413C: hypothetical protein L-413Cp35; EcSMS35_4312; phage(gi30065739)  4e-43  Click
13 4411961..4412185  PHAGE_Yersin_413C: hypothetical protein L-413Cp36; EcSMS35_4313; phage(gi30065740)  1e-35  Click
14 4412182..4412457  PHAGE_Yersin_413C: hypothetical protein L-413Cp37; EcSMS35_4314; phage(gi30065741)  6e-47  Click
15 4412447..4414732  PHAGE_Yersin_413C: gpA; EcSMS35_4315; phage(gi30065742)  0.0  Click
16 4414732..4415184  PHAGE_Yersin_413C: hypothetical protein L-413Cp39; EcSMS35_4316; phage(gi30065743)  2e-75  Click
17 complement(4415256..4415378)  hypothetical protein; EcSMS35_4317  N/A  Click
18 4415633..4416571  PHAGE_Thermu_26: C5 cytosine-specific DNA methylase; EcSMS35_4319; phage(gi157265426)  2e-32  Click
19 complement(4416568..4417593)  hypothetical protein; EcSMS35_4318  N/A  Click
20 complement(4417598..4418803)  PHAGE_Yersin_413C: hypothetical protein L-413Cp40; EcSMS35_4320; phage(gi30065744)  1e-46  Click
21 4418887..4419048  hypothetical protein; EcSMS35_4321  N/A  Click
22 complement(4419087..4420121)  PHAGE_Yersin_413C: gpQ; EcSMS35_4322; phage(gi30065705)  0.0  Click
23 complement(4420121..4421893)  PHAGE_Yersin_413C: gpP; EcSMS35_4323; phage(gi30065706)  0.0  Click
24 4422067..4422921  PHAGE_Yersin_413C: gpO; EcSMS35_4324; phage(gi30065707)  8e-160  Click
25 4422980..4424053  PHAGE_Yersin_413C: gpN; EcSMS35_4325; phage(gi30065708)  0.0  Click
26 4424057..4424800  PHAGE_Yersin_413C: gpM; EcSMS35_4326; phage(gi30065709)  2e-134  Click
27 4424900..4425409  PHAGE_Yersin_413C: gpL; EcSMS35_4327; phage(gi30065710)  3e-92  Click
28 4425409..4425612  PHAGE_Yersin_413C: gpX; EcSMS35_4328; phage(gi30065711)  3e-32  Click
29 4425616..4425897  PHAGE_Yersin_413C: gpY; EcSMS35_4329; phage(gi30065712)  8e-46  Click
30 4425897..4426394  PHAGE_Yersin_413C: gpK; EcSMS35_4330; phage(gi30065713)  2e-92  Click
31 4426409..4426834  PHAGE_Yersin_413C: LysA; EcSMS35_4331; phage(gi30065714)  3e-66  Click
32 4426822..4427247  PHAGE_Yersin_413C: LysB; EcSMS35_4332; phage(gi30065715)  2e-73  Click
33 4427102..4427392  PHAGE_Erwini_ENT90: putative host lysis-related protein; EcSMS35_4333; phage(gi431810968)  1e-24  Click
34 4427355..4427822  PHAGE_Yersin_413C: gpR; EcSMS35_4334; phage(gi30065716)  3e-83  Click
35 4427815..4428267  PHAGE_Yersin_413C: gpS; EcSMS35_4335; phage(gi30065717)  1e-79  Click
36 complement(4428339..4429124)  PHAGE_Entero_P2: hypothetical protein P2p15; EcSMS35_4336; phage(gi9630341)  2e-125  Click
37 4429208..4429843  PHAGE_Yersin_413C: gpV; EcSMS35_4337; phage(gi30065718)  3e-118  Click
38 4429840..4430187  PHAGE_Yersin_413C: gpW; EcSMS35_4338; phage(gi30065719)  1e-60  Click
39 4430192..4431100  PHAGE_Yersin_413C: gpJ; EcSMS35_4339; phage(gi30065720)  3e-164  Click
40 4431093..4431623  PHAGE_Yersin_413C: gpI; EcSMS35_4340; phage(gi30065721)  6e-96  Click
41 4431634..4433655  PHAGE_Entero_Mu: tail fiber; EcSMS35_4341; phage(gi9633540)  2e-172  Click
42 4433657..4434184  PHAGE_Yersin_413C: gpG; EcSMS35_4342; phage(gi30065723)  2e-86  Click
43 4434400..4435299  hypothetical protein; EcSMS35_4343  N/A  Click
44 complement(4435462..4435599)  hypothetical protein; EcSMS35_4344  N/A  Click
45 4435619..4436809  PHAGE_Yersin_413C: gpFI; EcSMS35_4345; phage(gi30065725)  0.0  Click
46 4436822..4437340  PHAGE_Yersin_413C: FII; EcSMS35_4346; phage(gi30065726)  6e-93  Click
47 4437397..4437672  PHAGE_Yersin_413C: gpE; EcSMS35_4347; phage(gi30065727)  3e-44  Click
48 4437705..4437824  PHAGE_Yersin_413C: gpE+E'; EcSMS35_4348; phage(gi30065728)  8e-17  Click
49 4437817..4440264  PHAGE_Yersin_413C: gpT; EcSMS35_4349; phage(gi30065729)  0.0  Click
50 4440279..4440758  PHAGE_Yersin_413C: gpU; EcSMS35_4350; phage(gi30065730)  2e-85  Click
51 4440758..4441921  PHAGE_Yersin_413C: gpD; EcSMS35_4351; phage(gi30065731)  0.0  Click
52 4442003..4442221  PHAGE_Yersin_413C: Ogr; EcSMS35_4352; phage(gi30065732)  3e-39  Click
53 complement(4442260..4443588)  PROPHAGE_Escher_MG1655: IS4 transposase; EcSMS35_4353; phage(gi16132099)  0.0  Click
54 4443760..4443882  hypothetical protein; EcSMS35_4354  N/A  Click
55 4443772..4443818  attR    GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTTATC  N/A  Click
56 4443897..4444799  ferrous iron efflux protein F; EcSMS35_4355  N/A  Click
57 4444980..4445942  PHAGE_Ostreo_OlV5: 6-phosphofructokinase; EcSMS35_4356; phage(gi472341206)  4e-16  Click