Definition Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome.
Accession NC_010125
Length 3,944,163
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 10 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(405194..405445)  prevent-host-death protein; GDI_0406  N/A  Click
2 405783..406679  PROPHAGE_Escher_CFT073: transposase; GDI_0407; phage(gi26248360)  1e-11  Click
3 406386..406397  attL    GCCGTGGACCGG  N/A  Click
4 complement(406716..407621)  PHAGE_Entero_4795: putative transposase OrfB protein of IS629; GDI_0408; phage(gi157166067)  4e-96  Click
5 complement(407621..407947)  PHAGE_Entero_4795: putative transposase OrfA protein of IS629; GDI_0409; phage(gi157166062)  4e-28  Click
6 408618..409397  PROPHAGE_Escher_CFT073: transposase/IS protein; GDI_0411; phage(gi26248359)  7e-35  Click
7 409579..410361  PROPHAGE_Xantho_33913: IS1480 transposase; GDI_0412; phage(gi21231089)  4e-20  Click
8 410569..411072  TetR family transcriptional regulator; GDI_0413  N/A  Click
9 411297..412337  peroxidase family protein; GDI_0414  N/A  Click
10 412339..413163  bacteriocin protein; GDI_0415  N/A  Click
11 complement(413206..414132)  PHAGE_Acanth_1: hypothetical protein ATCV1_Z295L; GDI_0416; phage(gi155371242)  2e-05  Click
12 419696..419707  attR    GCCGTGGACCGG  N/A  Click
Region 2, total : 16 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 988779..988790  attL    TCGCATGACATA  N/A  Click
2 992342..993574  PROPHAGE_Escher_CFT073: transposase; GDI_0975; phage(gi26248360)  2e-31  Click
3 993571..994374  PROPHAGE_Escher_CFT073: transposase/IS protein; GDI_0976; phage(gi26248359)  8e-50  Click
4 994371..995447  hypothetical protein; GDI_0977  N/A  Click
5 995491..995781  hypothetical protein; GDI_0978  N/A  Click
6 complement(995922..996980)  PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; GDI_0979; phage(gi160688404)  2e-10  Click
7 complement(997143..998021)  PHAGE_Entero_Sf6: putative transposase OrfB; GDI_0980; phage(gi41057343)  3e-29  Click
8 complement(998018..998329)  PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; GDI_0981; phage(gi17546153)  2e-05  Click
9 complement(998399..999172)  hypothetical protein; GDI_0982  N/A  Click
10 999258..999728  PROPHAGE_Brucel_1330: ISBm1, transposase orfA; GDI_0983; phage(gi23501424)  2e-10  Click
11 999725..1000087  PROPHAGE_Xantho_33913: IS1480 transposase; GDI_0984; phage(gi21231089)  5e-14  Click
12 1000289..1001542  hypothetical protein; GDI_0985  N/A  Click
13 complement(1001646..1002785)  PHAGE_Lactob_KC5a: putative minor tail protein; GDI_0986; phage(gi90592623)  6e-06  Click
14 complement(1002815..1003804)  PROPHAGE_Mesorh_MAFF303099: transposase; GDI_0987; phage(gi13474791)  2e-08  Click
15 1003901..1004224  ArsR family transcriptional regulator; GDI_0988  N/A  Click
16 1004278..1005174  2-dehydropantoate 2-reductase; GDI_0989  N/A  Click
17 1005431..1006963  PROPHAGE_Escher_CFT073: transposase; GDI_0990; phage(gi26248360)  5e-14  Click
18 1016949..1016960  attR    TCGCATGACATA  N/A  Click
Region 3, total : 29 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 1058080..1058092  attL    ATGGCTGATGGCG  N/A  Click
2 complement(1058482..1059387)  PROPHAGE_Xantho_306: transposase; GDI_1043; phage(gi21243165)  3e-106  Click
3 complement(1059387..1059701)  PROPHAGE_Escher_Sakai: putative transposase; GDI_1044; phage(gi15832212)  6e-28  Click
4 1059743..1059760  attL    GAAACCCGGGACGCTTCA  N/A  Click
5 1059776..1060225  hypothetical protein; GDI_1045  N/A  Click
6 1060239..1060811  hypothetical protein; GDI_1046  N/A  Click
7 complement(1060846..1062321)  allantoin permease; GDI_1047  N/A  Click
8 1062475..1062762  PHAGE_Staphy_phiPV83: transposase; GDI_1048; phage(gi9635722)  2e-08  Click
9 1063083..1063138  attL    AGCATCCACGCCGGCCACTTCAAGCCGTCCGTCAGATTAAGTGCAAACTTCTACAC  N/A  Click
10 complement(1063339..1063650)  transposase; GDI_1051  N/A  Click
11 1064362..1065072  PHAGE_Staphy_3: tail length tape measure protein; GDI_1053; phage(gi156604065)  2e-05  Click
12 complement(1065116..1065265)  hypothetical protein; GDI_1054  N/A  Click
13 1065277..1065789  PHAGE_Ralsto_RSM3: hypothetical protein RSM3_gp14; GDI_1055; phage(gi209901327)  5e-18  Click
14 complement(1065817..1066038)  hypothetical protein; GDI_1056  N/A  Click
15 1066586..1066852  PROPHAGE_Xantho_306: ISxac2 transposase; GDI_1057; phage(gi21244663)  5e-25  Click
16 1066876..1067598  PROPHAGE_Xantho_33913: IS1477 transposase; GDI_1058; phage(gi77747809)  1e-57  Click
17 1067690..1068151  transposase; GDI_1059  N/A  Click
18 1068528..1068583  attR    AGCATCCACGCCGGCCACTTCAAGCCGTCCGTCAGATTAAGTGCAAACTTCTACAC  N/A  Click
19 1069166..1069723  hypothetical protein; GDI_1062  N/A  Click
20 complement(1069773..1069937)  hypothetical protein; GDI_1063  N/A  Click
21 1070114..1070428  PROPHAGE_Escher_Sakai: putative transposase; GDI_1064; phage(gi15832212)  6e-28  Click
22 1070425..1070697  PROPHAGE_Xantho_306: transposase; GDI_1065; phage(gi21243165)  4e-13  Click
23 1070697..1071332  PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; GDI_1066; phage(gi17975200)  3e-76  Click
24 1071354..1071371  attR    GAAACCCGGGACGCTTCA  N/A  Click
25 complement(1071510..1071992)  PHAGE_Prochl_SSM4: heat shock protein; GDI_1067; phage(gi61806343)  1e-18  Click
26 complement(1072239..1072721)  hypothetical protein; GDI_1068  N/A  Click
27 1072824..1073144  hypothetical protein; GDI_1069  N/A  Click
28 1073179..1073340  hypothetical protein; GDI_1070  N/A  Click
29 1073449..1073712  bifunctional antitoxin/transcriptional repressor RelB; GDI_1071  N/A  Click
30 1073705..1074049  relE protein (antitoxin); GDI_1072  N/A  Click
31 1074848..1074860  attR    ATGGCTGATGGCG  N/A  Click
32 1074879..1074890  attL    ATGTAATACCAA  N/A  Click
33 1074987..1075190  transposase; GDI_1074  N/A  Click
34 complement(1075686..1076156)  PROPHAGE_Shewan_MR-1: ISSod10, transposase OrfA; GDI_1076; phage(gi24371809)  1e-05  Click
35 1076208..1076474  PROPHAGE_Xantho_306: ISxac2 transposase; GDI_1077; phage(gi21244663)  1e-24  Click
36 1076510..1077325  PROPHAGE_Xantho_33913: IS1477 transposase; GDI_1078; phage(gi77747809)  8e-63  Click
37 1080061..1080072  attR    ATGTAATACCAA  N/A  Click
Region 4, total : 13 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2139155..2140420  PHAGE_Acanth_mimivirus: putative zinc protease; GDI_2089; phage(gi311977609)  3e-31  Click
2 2140417..2141757  PROPHAGE_Escher_Sakai: protease TldD; GDI_2090; phage(gi15833371)  8e-16  Click
3 2141772..2142746  hypothetical protein; GDI_2091  N/A  Click
4 complement(2143072..2143635)  PROPHAGE_Shewan_MR-1: putative transposase; GDI_2092; phage(gi28275189)  3e-17  Click
5 complement(2143632..2144141)  PROPHAGE_Shewan_MR-1: ISSod10, transposase OrfA; GDI_2093; phage(gi24371809)  9e-14  Click
6 2144325..2144846  PHAGE_Synech_S_SKS1: sulfotransferase; GDI_2094; phage(gi472341123)  4e-15  Click
7 complement(2145039..2145695)  PHAGE_Strept_7201: ORF5; GDI_2095; phage(gi9634631)  3e-07  Click
8 complement(2145685..2147217)  PROPHAGE_Escher_CFT073: transposase; GDI_2096; phage(gi26248360)  6e-13  Click
9 2147274..2147528  hypothetical protein; GDI_2097  N/A  Click
10 2147601..2148278  invasion associated locus B (IalB) protein; GDI_2098  N/A  Click
11 complement(2148337..2148474)  hypothetical protein; GDI_2099  N/A  Click
12 complement(2148484..2149431)  protoheme IX farnesyltransferase; GDI_2100  N/A  Click
13 complement(2149428..2150840)  PHAGE_Lactob_KC5a: putative minor tail protein; GDI_2101; phage(gi90592623)  1e-05  Click
Region 5, total : 13 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2691650..2691662  attL    GCGGCGGGGGCGG  N/A  Click
2 2691711..2692769  PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; GDI_2599; phage(gi160688404)  2e-10  Click
3 2693440..2693751  PHAGE_Escher_D108: Ner; GDI_2600; phage(gi281199646)  7e-05  Click
4 2693748..2694587  PHAGE_Rhodob_RcapMu: ParB-like nuclease; GDI_2601; phage(gi356870851)  1e-17  Click
5 2694584..2694844  hypothetical protein; GDI_2602  N/A  Click
6 2694841..2695308  hypothetical protein; GDI_2603  N/A  Click
7 2695365..2695763  PHAGE_Rhodob_RcapMu: conserved transposable prophage protein; GDI_2604; phage(gi356870852)  1e-10  Click
8 2696288..2697808  PROPHAGE_Escher_CFT073: transposase; GDI_2605; phage(gi26248360)  3e-12  Click
9 2697798..2698577  PROPHAGE_Escher_CFT073: transposase/IS protein; GDI_2606; phage(gi26248359)  3e-35  Click
10 2698737..2699435  PHAGE_Entero_SfV: tail protein; GDI_2607; phage(gi19549009)  2e-23  Click
11 2699432..2700121  PHAGE_Entero_SfV: tail protein; GDI_2608; phage(gi19548988)  7e-08  Click
12 2700147..2701139  PHAGE_Klebsi_JD001: putative tail-fiber protein; GDI_2609; phage(gi448245166)  1e-44  Click
13 2701136..2703082  hypothetical protein; GDI_2610  N/A  Click
14 2703164..2703427  PHAGE_Acinet_Bphi_B1251: hypothetical protein; GDI_2611; phage(gi423262015)  1e-05  Click
15 2705360..2705372  attR    GCGGCGGGGGCGG  N/A  Click
Region 6, total : 25 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3649996..3650019  attL    GGAGAATTGGTGGAGGGGGTTTCC  N/A  Click
2 complement(3651760..3652326)  PHAGE_Pectob_My1: YadA domain-containing protein; GDI_3555; phage(gi410491156)  3e-05  Click
3 complement(3652406..3652948)  hypothetical protein; GDI_3556  N/A  Click
4 complement(3653003..3653296)  hypothetical protein; GDI_3557  N/A  Click
5 complement(3653375..3653746)  hypothetical protein; GDI_3558  N/A  Click
6 complement(3653743..3654234)  PHAGE_Burkho_AH2: lysozyme; GDI_3559; phage(gi399529080)  3e-06  Click
7 complement(3654231..3654512)  hypothetical protein; GDI_3560  N/A  Click
8 complement(3654558..3656489)  PHAGE_Burkho_BcepNY3: tail spike protein; GDI_3561; phage(gi149882951)  9e-06  Click
9 complement(3656486..3657502)  PHAGE_Klebsi_JD001: putative tail-fiber protein; GDI_3562; phage(gi448245166)  2e-46  Click
10 complement(3657513..3658160)  PHAGE_Entero_SfV: tail protein; GDI_3563; phage(gi19548988)  6e-20  Click
11 complement(3658164..3659636)  PHAGE_RD114_retrovirus: gag-pol precursor polyprotein; GDI_3564; phage(gi157939613)  1e-04  Click
12 complement(3659637..3660365)  PHAGE_Entero_SfV: tail protein; GDI_3565; phage(gi19549009)  2e-24  Click
13 complement(3660366..3660866)  PHAGE_Entero_SfV: tail protein; GDI_3566; phage(gi19549008)  6e-09  Click
14 complement(3660878..3661390)  PHAGE_Entero_Mu: putative baseplate assembly protein; GDI_3567; phage(gi9633536)  5e-12  Click
15 complement(3661387..3662589)  PHAGE_Entero_phiP27: putative tail protein; GDI_3568; phage(gi18249913)  6e-29  Click
16 complement(3662652..3663959)  PHAGE_Entero_SfV: tail/DNA circulation protein; GDI_3569; phage(gi19549005)  1e-23  Click
17 3664121..3664297  hypothetical protein; GDI_3570  N/A  Click
18 3664329..3664580  PHAGE_Burkho_phiE202: gp7, pANL12; GDI_3571; phage(gi134288781)  4e-07  Click
19 complement(3664600..3665010)  hypothetical protein; GDI_3572  N/A  Click
20 3666724..3667362  PROPHAGE_Escher_CFT073: transposase/IS protein; GDI_3574; phage(gi26248359)  8e-33  Click
21 3667452..3668516  PHAGE_Pectob_ZF40: putative methylase; GDI_3575; phage(gi422936661)  6e-40  Click
22 3668513..3668989  hypothetical protein; GDI_3576  N/A  Click
23 3668980..3669648  hypothetical protein; GDI_3577  N/A  Click
24 3669656..3669883  hypothetical protein; GDI_3578  N/A  Click
25 complement(3671285..3672640)  PROPHAGE_Escher_CFT073: putative prophage integrase; GDI_3580; phage(gi26250313)  2e-72  Click
26 3672690..3672713  attR    GGAGAATTGGTGGAGGGGGTTTCC  N/A  Click
27 3672861..3674090  PROPHAGE_Escher_CFT073: P4 family integrase; GDI_3581; phage(gi26248244)  1e-79  Click
Region 7, total : 13 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 3859994..3861301  PHAGE_Natria_PhiCh1: M.PhiCh1-II; GDI_3776; phage(gi22091184)  7e-23  Click
2 complement(3861185..3862126)  hypothetical protein; GDI_3777  N/A  Click
3 complement(3862123..3864438)  PHAGE_Ectoca_1: EsV-1-186; GDI_3778; phage(gi13242656)  1e-05  Click
4 3864624..3865085  PHAGE_Burkho_KL3: gp46; GDI_3779; phage(gi327198091)  2e-32  Click
5 3865082..3865294  hypothetical protein; GDI_3780  N/A  Click
6 3865512..3865910  PHAGE_Staphy_phiPV83: transposase; GDI_3781; phage(gi9635722)  3e-12  Click
7 3866051..3866599  PHAGE_Staphy_phiPV83: transposase; GDI_3782; phage(gi9635722)  8e-08  Click
8 3866969..3867739  PROPHAGE_Xantho_33913: IS1480 transposase; GDI_3783; phage(gi21231089)  4e-26  Click
9 complement(3867904..3868332)  hypothetical protein; GDI_3784  N/A  Click
10 complement(3868402..3869304)  PHAGE_Burkho_phi1026b: gp58; GDI_3785; phage(gi38707948)  7e-07  Click
11 3869487..3870260  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; GDI_3786; phage(gi116326757)  6e-15  Click
12 3870328..3871737  PHAGE_Lactob_KC5a: putative minor tail protein; GDI_3787; phage(gi90592623)  6e-06  Click
13 complement(3871714..3872544)  PHAGE_Ostreo_2: putative 3-methyl-2-oxobutanoate hydroxymethyltransferase; GDI_3788; phage(gi314055124)  4e-41  Click