Definition Escherichia coli HS, complete genome.
Accession NC_009800
Length 4,643,538
Summary Detailed summary Map Image Text file for download

Legend

Hits against Virus and prophage DB
Hits against Bacterial DB or GenBank file
Region 1, total : 58 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 291771..291819  attL    ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTT  N/A  Click
2 complement(291831..292991)  PHAGE_Entero_HK542: integrase; EcHS_A0272; phage(gi428783369)  0.0  Click
3 complement(293301..293645)  PHAGE_Entero_mEp213: hypothetical protein; EcHS_A0273; phage(gi428782615)  9e-61  Click
4 complement(293833..294474)  PHAGE_Entero_P22: EaA; EcHS_A0274; phage(gi9635497)  1e-53  Click
5 complement(294476..295159)  PHAGE_Entero_HK620: hypothetical protein HK620p07; EcHS_A0275; phage(gi13559830)  8e-60  Click
6 complement(295156..295782)  PHAGE_Pseudo_F116: hypothetical protein F116p06; EcHS_A0276; phage(gi56692933)  1e-09  Click
7 complement(295797..295964)  PHAGE_Entero_HK620: hypothetical protein HK620p09; EcHS_A0277; phage(gi13559832)  3e-24  Click
8 complement(295981..296295)  PHAGE_Entero_mEpX1: hypothetical protein; EcHS_A0278; phage(gi428781904)  5e-53  Click
9 complement(296307..296666)  PHAGE_Entero_HK140: hypothetical protein; EcHS_A0279; phage(gi428781979)  4e-54  Click
10 296704..296982  PROPHAGE_Xantho_33913: ISxac3 transposase; EcHS_A0280; phage(gi21231087)  1e-27  Click
11 297039..297851  PROPHAGE_Escher_CFT073: transposase insF; EcHS_A0281; phage(gi26250329)  1e-159  Click
12 complement(297848..298021)  PHAGE_Entero_HK140: hypothetical protein; EcHS_A0282; phage(gi428781979)  4e-23  Click
13 complement(298005..298907)  PHAGE_Entero_mEpX1: RecT family recombination protein; EcHS_A0283; phage(gi428781906)  7e-151  Click
14 complement(299193..299330)  hypothetical protein; EcHS_A0284  N/A  Click
15 complement(299543..299911)  PHAGE_Entero_lambda: Putative single-stranded DNA binding protein; EcHS_A0285; phage(gi9626285)  1e-67  Click
16 complement(300094..300345)  PHAGE_Entero_mEp234: hypothetical protein; EcHS_A0286; phage(gi428782288)  4e-43  Click
17 complement(300479..300823)  PHAGE_Entero_mEp235: transcription termination factor Nun; EcHS_A0287; phage(gi428781848)  1e-62  Click
18 complement(300820..301125)  PHAGE_Entero_mEpX1: antitermination protein N; EcHS_A0288; phage(gi428781912)  8e-52  Click
19 complement(301440..302090)  PHAGE_Entero_mEp235: prophage repressor; EcHS_A0289; phage(gi428781850)  4e-124  Click
20 302171..302356  PHAGE_Entero_mEp235: prophage antirepressor; EcHS_A0290; phage(gi428781851)  1e-28  Click
21 302472..302768  PHAGE_Entero_mEp235: CII protein; EcHS_A0291; phage(gi428781852)  1e-50  Click
22 302940..303839  PHAGE_Entero_HK620: replication protein O; EcHS_A0292; phage(gi13559847)  8e-176  Click
23 303829..305265  PHAGE_Entero_HK620: replication protein P; EcHS_A0293; phage(gi13559848)  0.0  Click
24 305342..305782  PHAGE_Entero_HK446: NinB protein; EcHS_A0294; phage(gi428782241)  3e-82  Click
25 305919..306095  PHAGE_Salmon_vB_SosS_Oslo: NinE protein; EcHS_A0295; phage(gi399528825)  2e-28  Click
26 306098..306457  PHAGE_Entero_IME10: ninX; EcHS_A0296; phage(gi422934274)  3e-64  Click
27 306457..306633  PHAGE_Entero_HK629: NinF protein; EcHS_A0297; phage(gi428782067)  2e-28  Click
28 306626..306895  PHAGE_Entero_mEp235: hypothetical protein; EcHS_A0298; phage(gi428781861)  8e-46  Click
29 306895..307185  PHAGE_Escher_HK75: hypothetical protein; EcHS_A0299; phage(gi356870725)  1e-53  Click
30 307182..307544  PHAGE_Entero_HK620: holiday-junction resolvase; EcHS_A0300; phage(gi13559855)  7e-64  Click
31 307541..307729  PHAGE_Entero_mEpX2: NinH protein; EcHS_A0301; phage(gi428765670)  1e-29  Click
32 307726..308349  PHAGE_Entero_mEpX1: late gene regulator Q; EcHS_A0302; phage(gi428781929)  7e-118  Click
33 309172..309495  PHAGE_Entero_mEp213: holin protein; EcHS_A0303; phage(gi428782657)  1e-55  Click
34 309479..309955  PHAGE_Escher_HK75: lysozyme; EcHS_A0304; phage(gi356870730)  7e-89  Click
35 309952..310389  PHAGE_Salmon_vB_SemP_Emek: Rz lysis protein; EcHS_A0305; phage(gi399498858)  2e-75  Click
36 310553..311107  PHAGE_Escher_P13374: regulatory protein; EcHS_A0306; phage(gi410491650)  3e-41  Click
37 311462..311704  PHAGE_Salmon_vB_SemP_Emek: hypothetical protein; EcHS_A0307; phage(gi399498861)  6e-39  Click
38 311707..312147  PHAGE_Riemer_RAP44: hypothetical protein; EcHS_A0308; phage(gi418489899)  6e-30  Click
39 312144..313559  PHAGE_Entero_HK620: terminase large subunit; EcHS_A0309; phage(gi13559866)  0.0  Click
40 313576..315759  PHAGE_Entero_HK620: portal protein; EcHS_A0310; phage(gi13559867)  0.0  Click
41 315850..316743  PHAGE_Entero_HK620: scaffold protein; EcHS_A0311; phage(gi13559868)  2e-28  Click
42 316762..318015  PHAGE_Entero_P22: coat protein; EcHS_A0312; phage(gi9635538)  2e-35  Click
43 318021..318245  hypothetical protein; EcHS_A0313  N/A  Click
44 318226..318687  PHAGE_Entero_HK620: DNA stabilization protein; EcHS_A0314; phage(gi13559871)  3e-27  Click
45 318697..320115  PHAGE_Entero_HK620: DNA stabilization protein; EcHS_A0315; phage(gi13559872)  0.0  Click
46 320115..321068  PHAGE_Salmon_epsilon34: Tail accessory protein; EcHS_A0316; phage(gi221328627)  7e-40  Click
47 321068..321523  PHAGE_Entero_HK620: head assembly protein; EcHS_A0317; phage(gi13559874)  3e-86  Click
48 321526..322218  PHAGE_Entero_HK620: DNA transfer protein; EcHS_A0318; phage(gi13559875)  1e-117  Click
49 322229..323614  PHAGE_Salmon_vB_SemP_Emek: injection protein; EcHS_A0319; phage(gi399498803)  0.0  Click
50 323614..325440  PHAGE_Entero_P22: injection protein; EcHS_A0320; phage(gi51236731)  0.0  Click
51 complement(325462..326133)  PHAGE_Entero_P22: SieA; EcHS_A0321; phage(gi9635547)  1e-16  Click
52 complement(326165..326806)  PHAGE_Entero_IME10: repressor protein; EcHS_A0322; phage(gi422934295)  9e-13  Click
53 327153..327779  PHAGE_Salmon_SPN3UB: hypothetical protein; EcHS_A0323; phage(gi423262398)  1e-88  Click
54 327868..328461  PHAGE_Entero_P1: Ant2; EcHS_A0324; phage(gi46401670)  4e-31  Click
55 328522..328800  PROPHAGE_Xantho_33913: ISxac3 transposase; EcHS_A0325; phage(gi21231087)  1e-27  Click
56 328857..329669  PROPHAGE_Escher_CFT073: transposase insF; EcHS_A0326; phage(gi26250329)  1e-159  Click
57 330240..332150  PHAGE_Entero_HK620: tail spike protein; EcHS_A0327; phage(gi13559880)  2e-38  Click
58 332857..333174  PHAGE_Entero_mEp390: hypothetical protein; EcHS_A0328; phage(gi428782690)  6e-25  Click
59 333628..333676  attR    ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTT  N/A  Click
60 333837..335045  PROPHAGE_Escher_CFT073: putative prophage integrase; EcHS_A0329; phage(gi26250313)  3e-145  Click
Region 2, total : 41 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 916890..916901  attL    GTGGTGGTTATT  N/A  Click
2 complement(917273..918304)  PHAGE_Entero_2: P2 Int-like protein; EcHS_A0909; phage(gi169936064)  1e-100  Click
3 918417..918509  hypothetical protein; EcHS_A0910  N/A  Click
4 complement(918700..919269)  PHAGE_Entero_2: P2 CI-like protein; EcHS_A0911; phage(gi169936063)  3e-35  Click
5 919395..919616  PHAGE_Pasteu_F108: Cox; EcHS_A0912; phage(gi109302900)  2e-05  Click
6 919649..920158  PHAGE_Entero_2: bacteriophage regulatory protein CII; EcHS_A0913; phage(gi169936061)  2e-83  Click
7 920330..920671  PHAGE_Entero_2: hypothetical protein STM2733.Fels2; EcHS_A0914; phage(gi169936058)  1e-50  Click
8 920739..920972  PHAGE_Entero_2: hypothetical protein STM2732.Fels2; EcHS_A0915; phage(gi169936057)  1e-26  Click
9 920972..921199  PHAGE_Entero_2: P2 gpOrf82-like protein; EcHS_A0916; phage(gi169936056)  1e-34  Click
10 921196..922053  PHAGE_Entero_2: DNA adenine methylase-like protein; EcHS_A0917; phage(gi169936055)  3e-118  Click
11 922050..924464  PHAGE_Entero_2: P2 gpA-like protein; EcHS_A0918; phage(gi169936054)  0.0  Click
12 924619..924807  PHAGE_Entero_2: hypothetical protein STM2728.Fels2; EcHS_A0919; phage(gi169936053)  2e-28  Click
13 924818..925051  PHAGE_Entero_2: TumB protein; EcHS_A0920; phage(gi169936052)  2e-38  Click
14 925111..925842  PHAGE_Entero_2: hypothetical protein STM2726.Fels2; EcHS_A0921; phage(gi169936051)  6e-133  Click
15 926128..927519  hypothetical protein; EcHS_A0922  N/A  Click
16 complement(927547..928572)  PHAGE_Entero_2: P2 gpQ-like protein; EcHS_A0923; phage(gi169936049)  9e-169  Click
17 complement(928572..930338)  PHAGE_Entero_2: P2 gpP-like protein; EcHS_A0924; phage(gi169936048)  0.0  Click
18 930481..931314  PHAGE_Entero_2: P2 gpO-like protein; EcHS_A0925; phage(gi169936047)  4e-131  Click
19 931331..932389  PHAGE_Entero_2: P2 gpN-like major capsid protein; EcHS_A0926; phage(gi169936046)  3e-178  Click
20 932393..933043  PHAGE_Entero_2: P2 gpM-like protein; EcHS_A0927; phage(gi169936045)  8e-113  Click
21 933076..933603  PHAGE_Entero_2: P2 gpL-like protein; EcHS_A0928; phage(gi169936044)  2e-77  Click
22 933603..933806  PHAGE_Entero_2: P2 gpX-like tail protein; EcHS_A0929; phage(gi169936043)  1e-32  Click
23 933810..934025  PHAGE_Entero_2: lysis protein; EcHS_A0930; phage(gi169936042)  6e-29  Click
24 934006..934518  PHAGE_Entero_2: endolysin; EcHS_A0931; phage(gi169936041)  1e-81  Click
25 934520..934897  hypothetical protein; EcHS_A0932  N/A  Click
26 934894..935322  PHAGE_Entero_2: P2 LysB-like protein; EcHS_A0933; phage(gi169936038)  5e-56  Click
27 935418..935849  PHAGE_Entero_2: P2 gpR-like tail completion protein; EcHS_A0934; phage(gi169936036)  2e-71  Click
28 935842..936288  PHAGE_Entero_2: P2 gpS-like tail completion protein; EcHS_A0935; phage(gi169936035)  6e-73  Click
29 936357..936935  PHAGE_Entero_2: P2 gpV-like protein; EcHS_A0936; phage(gi169936034)  7e-96  Click
30 936932..937291  PHAGE_Entero_2: P2 gpW-like baseplate protein; EcHS_A0937; phage(gi169936033)  5e-52  Click
31 937278..938186  PHAGE_Entero_2: P2 gpJ-like baseplate assembly protein; EcHS_A0938; phage(gi169936032)  2e-147  Click
32 938179..938784  PHAGE_Entero_2: P2 gpI-like baseplate assembly protein; EcHS_A0939; phage(gi169936031)  1e-110  Click
33 938781..940532  PHAGE_Entero_2: P2 gpH-like protein; EcHS_A0940; phage(gi169936030)  1e-78  Click
34 940532..940945  PHAGE_Entero_HK106: tail fiber assembly protein; EcHS_A0941; phage(gi428783304)  1e-23  Click
35 941052..942224  PHAGE_Entero_2: P2 gpFI-like protein; EcHS_A0942; phage(gi169936025)  0.0  Click
36 942234..942749  PHAGE_Entero_2: P2 gpFII-like protein; EcHS_A0943; phage(gi169936024)  4e-91  Click
37 942804..943106  PHAGE_Entero_2: P2 gpE-like tail protein; EcHS_A0944; phage(gi169936023)  1e-45  Click
38 943121..943240  PHAGE_Entero_2: P2 gpE-like protein; EcHS_A0945; phage(gi169936022)  1e-14  Click
39 943233..946310  PHAGE_Entero_2: P2 gpT-like tail protein; EcHS_A0946; phage(gi169936021)  0.0  Click
40 946310..946792  PHAGE_Entero_2: P2 gpU-like tail protein; EcHS_A0947; phage(gi169936020)  2e-74  Click
41 946789..947889  PHAGE_Entero_2: P2 gpD-like tail protein; EcHS_A0948; phage(gi169936019)  0.0  Click
42 947980..948198  PHAGE_Entero_2: P2 gpOgr-like protein (acttivation of late gene expression); EcHS_A0949; phage(gi169936018)  2e-22  Click
43 951393..951404  attR    GTGGTGGTTATT  N/A  Click
Region 3, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1374824..1375414)  PHAGE_Cyanop_PSS2: BtuR/CobO ATP:corrinoid adenosyltransferase; EcHS_A1379; phage(gi254729498)  1e-15  Click
2 complement(1375411..1376169)  PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; EcHS_A1380; phage(gi116326757)  5e-11  Click
3 1376389..1377438  PHAGE_Entero_WV8: putative head maturation protease; EcHS_A1381; phage(gi238801794)  2e-13  Click
4 complement(1377474..1377725)  hypothetical protein; EcHS_A1382  N/A  Click
5 1378105..1380702  PHAGE_Cafete_BV_PW1: putative DNA topoisomerase IA; EcHS_A1383; phage(gi310831073)  1e-89  Click
6 1380912..1381886  transcriptional regulator CysB; EcHS_A1384  N/A  Click
7 1382175..1382450  PHAGE_Entero_P1: InsA; EcHS_A1385; phage(gi46401643)  6e-49  Click
8 1382369..1382872  PHAGE_Entero_P1: InsB; EcHS_A1386; phage(gi46401642)  1e-93  Click
Region 4, total : 7 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 complement(1654071..1655354)  PHAGE_Burkho_phi1026b: gp59; EcHS_A1633; phage(gi38707949)  1e-33  Click
2 1656105..1656371  hypothetical protein; EcHS_A1634  N/A  Click
3 1656386..1656398  attL    TTTTTTATCATTT  N/A  Click
4 1656688..1657278  PHAGE_Escher_D108: G region invertase; EcHS_A1635; phage(gi281199698)  8e-26  Click
5 complement(1657376..1657468)  PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; EcHS_A1636; phage(gi16129505)  5e-11  Click
6 complement(1657550..1661326)  PHAGE_Entero_T5: L-shaped tail fiber protein; EcHS_A1637; phage(gi46401894)  0.0  Click
7 complement(1661391..1661990)  PHAGE_Entero_cdtI: putative Lom-like outer membrane protein; EcHS_A1638; phage(gi148609401)  2e-107  Click
8 complement(1662058..1664703)  PHAGE_Entero_cdtI: putative tail tip assembly protein; EcHS_A1639; phage(gi148609400)  0.0  Click
9 1672470..1672482  attR    TTTTTTATCATTT  N/A  Click
Region 5, total : 9 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2049346..2050266  PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; EcHS_A2061; phage(gi163932195)  9e-05  Click
2 complement(2050255..2050725)  PHAGE_Burkho_KL3: gp46; EcHS_A2062; phage(gi327198091)  3e-35  Click
3 complement(2050706..2052124)  PHAGE_Burkho_KL3: gp47; EcHS_A2063; phage(gi327198092)  2e-101  Click
4 complement(2052191..2052871)  PHAGE_Lausan: metal-dependent phosphohydrolase; EcHS_A2064; phage(gi327409624)  4e-06  Click
5 2052898..2053176  PROPHAGE_Xantho_33913: ISxac3 transposase; EcHS_A2065; phage(gi21231087)  8e-28  Click
6 2053233..2054045  PROPHAGE_Escher_CFT073: transposase insF; EcHS_A2066; phage(gi26250329)  1e-159  Click
7 2054141..2054344  outer membrane protein, truncation; EcHS_A2067  N/A  Click
8 2054935..2055786  chaperone protein HchA; EcHS_A2068  N/A  Click
9 complement(2055894..2057252)  PHAGE_Ectoca_1: EsV-1-65; EcHS_A2069; phage(gi13242537)  6e-07  Click
Region 6, total : 22 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2057328..2057341  attL    ACTTTTGCGCGGAG  N/A  Click
2 complement(2062900..2063292)  PHAGE_Entero_mEp390: hypothetical protein; EcHS_A2076; phage(gi428782690)  6e-28  Click
3 complement(2063302..2063505)  PHAGE_Cronob_phiES15: hypothetical protein; EcHS_A2077; phage(gi401817614)  2e-11  Click
4 2064503..2064604  hypothetical protein; EcHS_A2078  N/A  Click
5 complement(2064812..2065612)  hypothetical protein; EcHS_A2079  N/A  Click
6 complement(2065622..2067616)  PHAGE_Vibrio_VvAW1: hypothetical protein; EcHS_A2080; phage(gi460042928)  3e-13  Click
7 2067981..2069072  PHAGE_Salmon_c341: O-polysaccharide acetyltransferase protein; EcHS_A2081; phage(gi255252697)  3e-07  Click
8 complement(2069051..2069836)  PHAGE_Klebsi_JD001: putative tail-fiber protein; EcHS_A2082; phage(gi448245166)  6e-28  Click
9 complement(2069863..2070537)  PHAGE_Entero_phiP27: hypothetical protein P27p53; EcHS_A2083; phage(gi18249917)  4e-20  Click
10 complement(2070534..2071682)  PHAGE_Entero_phiP27: hypothetical protein P27p52; EcHS_A2084; phage(gi18249916)  3e-33  Click
11 complement(2071672..2072121)  PHAGE_Entero_phiP27: hypothetical protein P27p51; EcHS_A2085; phage(gi18249915)  4e-16  Click
12 complement(2072118..2072699)  PHAGE_Entero_phiP27: putative baseplate assembly protein; EcHS_A2086; phage(gi18249914)  9e-14  Click
13 complement(2072696..2073781)  PHAGE_Entero_phiP27: putative tail protein; EcHS_A2087; phage(gi18249913)  5e-37  Click
14 complement(2073778..2074164)  PHAGE_Entero_phiP27: hypothetical protein P27p48; EcHS_A2088; phage(gi18249912)  9e-05  Click
15 complement(2074088..2074597)  hypothetical protein; EcHS_A2089  N/A  Click
16 complement(2074597..2075187)  PHAGE_Atelin_3: orf 48; EcHS_A2090; phage(gi9631239)  1e-10  Click
17 complement(2075189..2076055)  PHAGE_Entero_HK630: head maturation protease C; EcHS_A2091; phage(gi428782792)  4e-48  Click
18 complement(2076052..2077626)  PHAGE_Provid_Redjac: phage portal protein; EcHS_A2092; phage(gi410490794)  1e-60  Click
19 complement(2077686..2077949)  hypothetical protein; EcHS_A2093  N/A  Click
20 complement(2077958..2080084)  PHAGE_Vibrio_VHML: ORF22; EcHS_A2094; phage(gi27311189)  3e-73  Click
21 complement(2080026..2080589)  hypothetical protein; EcHS_A2095  N/A  Click
22 complement(2080837..2081361)  hypothetical protein; EcHS_A2097  N/A  Click
23 2081267..2081280  attR    ACTTTTGCGCGGAG  N/A  Click
24 2081355..2081957  PHAGE_Salmon_ST64B: Integrase protein; EcHS_A2096; phage(gi23505472)  6e-99  Click
Region 7, total : 8 CDS
# CDS_POSITION BLAST_HIT E-VALUE SEQUENCE
1 2797594..2797788  PHAGE_Entero_cdtI: hypothetical protein PcdtI_gp30; EcHS_A2781; phage(gi148609412)  6e-26  Click
2 2798026..2798973  hypothetical protein; EcHS_A2783  N/A  Click
3 complement(2799086..2799670)  PHAGE_Salmon_RE_2010: tail fiber assembly protein; EcHS_A2784; phage(gi418489714)  9e-70  Click
4 complement(2799816..2800319)  PROPHAGE_Escher_MG1655: IS1 transposase B; EcHS_A2785; phage(gi16131317)  4e-96  Click
5 complement(2800238..2800513)  PHAGE_Entero_P1: InsA; EcHS_A2786; phage(gi46401643)  6e-49  Click
6 complement(2800743..2801225)  hypothetical protein; EcHS_A2787  N/A  Click
7 complement(2801287..2802099)  PROPHAGE_Escher_CFT073: transposase insF; EcHS_A2788; phage(gi26250329)  1e-159  Click
8 complement(2802156..2802434)  PROPHAGE_Xantho_33913: ISxac3 transposase; EcHS_A2789; phage(gi21231087)  1e-27  Click